transcript:BL95581_evm0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95581_evm0
Unique Nametranscript:BL95581_evm0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95581_evm0

>transcript:BL95581_evm0-protein ID=transcript:BL95581_evm0-protein|Name=transcript:BL95581_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=196bp
MSGAVVLFVIAVLGTASGERCRGYTDAFGDYHAGFSCPTSSDFSSERYCC
GTSSYPYCCSSCLLSQFTFSCDADDIGDIVYLGTGAIVGIALGSLAFIGI
IITVCCCCCCACCAGCRSNPPPTTTVITNQPAAGVTVAQTSYQPYPQYPP
SGEMAQYPPPGPQYPPPGAQYPPQGQQGGMVYPPPYPGQGGQPMKH
Run BLAST on NCBI

mRNA from alignment at Sc0000063:1459468..1461797+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95581_evm0 ID=transcript:BL95581_evm0|Name=transcript:BL95581_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=2330bp|location=Sequence derived from alignment at Sc0000063:1459468..1461797+ (Branchiostoma lanceolatum)
ATGTCTGGCGCTGTGGTGCTGTTTGTGATCGCTGTTCTTGGGACAGGTAA
GAAATGTGTTCCCTCTCTGTGTTACTCATTCGTCTACAACAGAAAAGTCT
TCCTCGTGGCGTCCGCGTATACAAGGTTACAGCAAGGAGGTTAAATCTTG
GTTACAGCGTACACGTAGTCTCTGTTGGTCTTCTTTTACAATAAAAATAC
CATATTTTCATGATACTGTGTGCTAATTGATATGTTTTTTTCGAACTGAT
CCTTTTGGGTGATTTAATCTACTAACCTGTAAACGGACTAGTCCAAATCC
AAAGACAAGAGTTTTAGTTCGTGGGAGAACTTGACGTGGTACAAAATGGC
GGCCAGTGATTAATGGCAAAGTTTATATGATAAGCCAACAACCAGCCACT
TTGTCGTCGTAAAGGGTCATAAAATGGGCTTGTCTGCTCTTTTGATTTTT
AAGGATAATCTTATATCCTTACTTTATGACATAAAGTTAATAGAATTTCT
ATGGGGATATCGAAAATGGCATGGGATCTGGTGTGTACATTGTGACAAAG
TGTATATTTGAACAATTTGTGTCGTAGAGTAGAGCTTGCACTGGGTGAGG
TACTCGTAAACATCCACGCCCTTGGTCCGGCCAAAGTTCCAAAGTGTTGA
TGGCAGACGTATTTGCCCTACGATACGTCATCGGTCCGCTACCTTTGTAT
GTGCGTTTTATTATACATACAAACGAAACGATCATTCATGTTCATGAAGT
GATGAACCTAAGTAGTCTGGTTAAACCAAGGAGGTTAAAATCTTATTTTA
ACCTCCTTGGTTCAACTCTAATGTTGACAACACCCTGGCAGAACTGATCA
TCAGATAAAAACGAATATGATACAAAAGCCATGAGAGAGCTTCATGCCAT
GCTGACTTTCCTGTGTCATACGTAGCTTCGGGAGAGCGCTGTCGCGGCTA
CACCGACGCCTTCGGAGACTATCATGCTGGCTTCAGCTGCCCAACCTCGA
GTGACTTCTCCTCGGAGAGGTACTGCTGTGGCACCTCCTCATACCCGTAC
TGCTGCAGTTCCTGTCTGCTGTCTCAGGTGGCGTAACTTTAAAGACTTTG
ACAAAGCAAGTCTTAACTTTTGGTTTAGGCAGCTGCATTGACACTGACAG
TGGAAGTATGGTTGGTCTACCTTTAGTTTAGCTTTATTCAATGCTACTAG
ATGCATTAGGCAATGTTATCAAGAAGACCTGTGCTCTATTGGTGCTACAA
GTTAAAAAAAAACATAAACAGCTTCAACTTGTCGTAAAAGCCTTTCTCGC
GCAAACTCACATCTTGCCCTTAATAGATACATTTATGCTACCACAGTTCA
TTTCATCTGTTTCTCCATCTATCTACAGTTCACCTTTTCTTGTGACGCCG
ACGACATAGGCGACATCGTCTACCTCGGGTCAGTATGTGTGTGAATACGT
ATACGTGGCCTATAACGTGCCAATGCAATATTGAAGTTTTACCGGGGAAG
TTCAAGTGTCGCATATAGCGGGAAACAAACCAAATGTGGAGCATGAACTT
TAGAATACAGTCTCGTGGCCGTCTCTGAGCCATCGTCACAGTTATCGATA
TCTTTCAAGGTCACGGAGATGAAACAAGTAACATGACATGCACTGCTACC
CACAGCACCGGAGCCATTGTAGGCATTGCCCTGGGCAGTCTCGCCTTCAT
CGGCATCATCATCACGGTGTGCTGCTGCTGCTGCTGCGCCTGCTGTGCCG
GCTGCCGCTCGAACCCCCCGCGTAAGTACAACTTGTGGGAAAGGAGTGTG
GTGGTAGCCTGGGTGCCATTCCCAATACTACCGAGGCTCCTACACTCGCT
TTTTTCAGGGTAGCGAGTGTAGGAGCCCCGGTAGTAATCGGACGGCACCC
AGGCTAGTGTAGTGGCAGGAACAACGAAACTTATGGTAAGTTACAAACAC
TAGTACTAAGAGAAGAGAAACATAGAACGGGACAAAGGGAAGGTAACTTT
CTTTTTCATGGAAGAGATGTTACTGCCACTTAATAAGATTTAAGGAGGTA
GACGTTGTTTTAGTCTACCGGAGGTAACACTGTTGTGCTTTACTTCTCAA
CAGCCACGACGACCGTGATCACTAACCAACCGGCGGCTGGCGTCACCGTG
GCGCAGACCTCGTACCAGCCGTACCCGCAGTACCCTCCCAGCGGCGAGAT
GGCGCAGTACCCCCCTCCAGGGCCACAATACCCCCCTCCAGGGGCACAGT
ACCCCCCTCAGGGCCAACAGGGTGGAATGGTCTACCCCCCTCCCTACCCT
GGACAGGGTGGCCAACCCATGAAGCACTAA

Coding sequence (CDS) from alignment at Sc0000063:1459468..1461797+

>transcript:BL95581_evm0 ID=transcript:BL95581_evm0|Name=transcript:BL95581_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=2955bp|location=Sequence derived from alignment at Sc0000063:1459468..1461797+ (Branchiostoma lanceolatum)
ATGTCTGGCGCTGTGGTGCTGTTTGTGATCGCTGTTCTTGGGACAGCTTC
GGGAGAGCGCTGTCGCGGCTACACCGACGCCTTCGGAGACTATCATGCTG
GCTTCAGCTGCCCAACCTCGAGTGACTTCTCCTCGGAGAGGTACTGCTGT
GGCACCTCCTCATACCCGTACTGCTGCAGTTCCTGTCTGCTGTCTCAGTT
CACCTTTTCTTGTGACGCCGACGACATAGGCGACATCGTCTACCTCGGCA
CCGGAGCCATTGTAGGCATTGCCCTGGGCAGTCTCGCCTTCATCGGCATC
ATCATCACGGTGTGCTGCTGCTGCTGCTGCGCCTGCTGTGCCGGCTGCCG
CTCGAACCCCCCGCCCACGACGACCGTGATCACTAACCAACCGGCGGCTG
GCGTCACCGTGGCGCAGACCTCGTACCAGCCGTACCCGCAGTACCCTCCC
AGCGGCGAGATGGCGCAGTACCCCCCTCCAGGGCCACAATACCCCCCTCC
AGGGGCACAGTACCCCCCTCAGGGCCAACAGGGTGGAATGGTCTACCCCC
CTCCCTACCCTGGACAGGGTGGCCAACCCATGAAGCACTAAATGTCTGGC
GCTGTGGTGCTGTTTGTGATCGCTGTTCTTGGGACAGCTTCGGGAGAGCG
CTGTCGCGGCTACACCGACGCCTTCGGAGACTATCATGCTGGCTTCAGCT
GCCCAACCTCGAGTGACTTCTCCTCGGAGAGGTACTGCTGTGGCACCTCC
TCATACCCGTACTGCTGCAGTTCCTGTCTGCTGTCTCAGTTCACCTTTTC
TTGTGACGCCGACGACATAGGCGACATCGTCTACCTCGGCACCGGAGCCA
TTGTAGGCATTGCCCTGGGCAGTCTCGCCTTCATCGGCATCATCATCACG
GTGTGCTGCTGCTGCTGCTGCGCCTGCTGTGCCGGCTGCCGCTCGAACCC
CCCGCCCACGACGACCGTGATCACTAACCAACCGGCGGCTGGCGTCACCG
TGGCGCAGACCTCGTACCAGCCGTACCCGCAGTACCCTCCCAGCGGCGAG
ATGGCGCAGTACCCCCCTCCAGGGCCACAATACCCCCCTCCAGGGGCACA
GTACCCCCCTCAGGGCCAACAGGGTGGAATGGTCTACCCCCCTCCCTACC
CTGGACAGGGTGGCCAACCCATGAAGCACTAAATGTCTGGCGCTGTGGTG
CTGTTTGTGATCGCTGTTCTTGGGACAGCTTCGGGAGAGCGCTGTCGCGG
CTACACCGACGCCTTCGGAGACTATCATGCTGGCTTCAGCTGCCCAACCT
CGAGTGACTTCTCCTCGGAGAGGTACTGCTGTGGCACCTCCTCATACCCG
TACTGCTGCAGTTCCTGTCTGCTGTCTCAGTTCACCTTTTCTTGTGACGC
CGACGACATAGGCGACATCGTCTACCTCGGCACCGGAGCCATTGTAGGCA
TTGCCCTGGGCAGTCTCGCCTTCATCGGCATCATCATCACGGTGTGCTGC
TGCTGCTGCTGCGCCTGCTGTGCCGGCTGCCGCTCGAACCCCCCGCCCAC
GACGACCGTGATCACTAACCAACCGGCGGCTGGCGTCACCGTGGCGCAGA
CCTCGTACCAGCCGTACCCGCAGTACCCTCCCAGCGGCGAGATGGCGCAG
TACCCCCCTCCAGGGCCACAATACCCCCCTCCAGGGGCACAGTACCCCCC
TCAGGGCCAACAGGGTGGAATGGTCTACCCCCCTCCCTACCCTGGACAGG
GTGGCCAACCCATGAAGCACTAAATGTCTGGCGCTGTGGTGCTGTTTGTG
ATCGCTGTTCTTGGGACAGCTTCGGGAGAGCGCTGTCGCGGCTACACCGA
CGCCTTCGGAGACTATCATGCTGGCTTCAGCTGCCCAACCTCGAGTGACT
TCTCCTCGGAGAGGTACTGCTGTGGCACCTCCTCATACCCGTACTGCTGC
AGTTCCTGTCTGCTGTCTCAGTTCACCTTTTCTTGTGACGCCGACGACAT
AGGCGACATCGTCTACCTCGGCACCGGAGCCATTGTAGGCATTGCCCTGG
GCAGTCTCGCCTTCATCGGCATCATCATCACGGTGTGCTGCTGCTGCTGC
TGCGCCTGCTGTGCCGGCTGCCGCTCGAACCCCCCGCCCACGACGACCGT
GATCACTAACCAACCGGCGGCTGGCGTCACCGTGGCGCAGACCTCGTACC
AGCCGTACCCGCAGTACCCTCCCAGCGGCGAGATGGCGCAGTACCCCCCT
CCAGGGCCACAATACCCCCCTCCAGGGGCACAGTACCCCCCTCAGGGCCA
ACAGGGTGGAATGGTCTACCCCCCTCCCTACCCTGGACAGGGTGGCCAAC
CCATGAAGCACTAAATGTCTGGCGCTGTGGTGCTGTTTGTGATCGCTGTT
CTTGGGACAGCTTCGGGAGAGCGCTGTCGCGGCTACACCGACGCCTTCGG
AGACTATCATGCTGGCTTCAGCTGCCCAACCTCGAGTGACTTCTCCTCGG
AGAGGTACTGCTGTGGCACCTCCTCATACCCGTACTGCTGCAGTTCCTGT
CTGCTGTCTCAGTTCACCTTTTCTTGTGACGCCGACGACATAGGCGACAT
CGTCTACCTCGGCACCGGAGCCATTGTAGGCATTGCCCTGGGCAGTCTCG
CCTTCATCGGCATCATCATCACGGTGTGCTGCTGCTGCTGCTGCGCCTGC
TGTGCCGGCTGCCGCTCGAACCCCCCGCCCACGACGACCGTGATCACTAA
CCAACCGGCGGCTGGCGTCACCGTGGCGCAGACCTCGTACCAGCCGTACC
CGCAGTACCCTCCCAGCGGCGAGATGGCGCAGTACCCCCCTCCAGGGCCA
CAATACCCCCCTCCAGGGGCACAGTACCCCCCTCAGGGCCAACAGGGTGG
AATGGTCTACCCCCCTCCCTACCCTGGACAGGGTGGCCAACCCATGAAGC
ACTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95581gene:BL95581Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95581_evm0transcript:BL95581_evm0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95581_evm0-E1BL95581_evm0-E1-1564476830-252469Branchiostoma lanceolatumexon
BL95581_evm0-E2BL95581_evm0-E2-1564476830-252471Branchiostoma lanceolatumexon
BL95581_evm0-E3BL95581_evm0-E3-1564476830-252473Branchiostoma lanceolatumexon
BL95581_evm0-E4BL95581_evm0-E4-1564476830-252475Branchiostoma lanceolatumexon
BL95581_evm0-E5BL95581_evm0-E5-1564476830-252477Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000063genomeSc0000063:1459468..1461797 +
Properties
Property NameValue
Transcript idBL95581_evm0
Biotypeprotein_coding