transcript:BL95573_evm1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95573_evm1
Unique Nametranscript:BL95573_evm1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95573_evm1

>transcript:BL95573_evm1-protein ID=transcript:BL95573_evm1-protein|Name=transcript:BL95573_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=222bp
MIFGFLQDCVPAYECPTIPDDCVDLQYLADYVCNEGKKCVERGCKVPRTG
EIIRKGQKSGDCTCEEGGKLQCGQRVSPPVFPRPPSPAPACAPFGSCLPC
TTDAQCARHEYCGFTSSFSSGQCVGQDCYSDLDCEGGRCNGGAVRPRMRG
WCSLPPGMALGAAPVAYAAPVAYPAPGQVQGPVPPPGQYYGRWRKQGASE
NSDTNSDTPEPVDNTDNTEVAK
Run BLAST on NCBI

mRNA from alignment at Sc0000061:756518..758484-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95573_evm1 ID=transcript:BL95573_evm1|Name=transcript:BL95573_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=1967bp|location=Sequence derived from alignment at Sc0000061:756518..758484- (Branchiostoma lanceolatum)
ATGATATTTGGTAGGTGGGTAGGGGTCGGGAAAACGAAGGTCAAATTCAA
TAATGGGCCTCCTGGCGGCTTTCTACGGTACTGCGGCGGAACTTCCGGTT
TGATTGTAATCTCTTTGCAATGAATAAATAAATAAATCAAAAATTATATC
GTTGTTTTATACGGTATCGATCCCAATAAAAGAATAAGCTCGCGTGTTCA
AAAAAAAAACTTGATAGACTATTGTTTAATACTGATACGAATTAACCTGT
TTTGCAGGATTTTTGCAGGACTGTGTTCCTGCCTATGAGTGTCCCACCAT
ACCAGACGACTGCGTTGATCTGCAGTATCTTGCTGACTACGTCTGTAACG
AAGGAAAGAAGTGTGTTGAACGGGGGTGTAAAGTGCCCAGAACCGGGGAG
ATCATACGAAAAGGTGTGTTCTCGGGACTCTCATTCTCAAAGAAAGACTT
CTTTCCCTTAAAAAACGCATAATGTTTCACCACTTCGCTTTATGTACATA
TGTCTGCAGACAGAGGCCACGACCTATTTCTTCTTCAAGTTCGCGGCTTC
AGTCTTTTGTCATAGCCTGGGTACCATCCTAGTTAGTTAATCCTCCCACT
GGCTCTCCCCTACGTATGGGAGCCCCGAATTACTAGCAGGGCTACTTGTG
TCATTCTAAATTAAGGTGAATCATGGCGCTTTTCAAGTAGCTAGTAGAAC
AATACAGCTTTGTTTCTGTCTATCTATTCAGCGTTCGTATCACTGTTTGT
CTTTCCATGTTCAGGCCAGAAATCTGGAGATTGCACGTGCGAAGAGGGCG
GTAAGCTGCAGTGCGGCCAGCGGGTCAGTCCACCGGTGTTCCCGAGGCCC
CCTTCTCCAGCACCGGTACATGTACAACCTTTATCTTTTAGAATATTAGT
CAAACAATGCACATAGGCAGTACGTCTTAGCCCTGTGTTTTTTTCTCATT
AGATATCCGTATAGGACATATACAGTTTTTTATAATGTAAATTGCAATCA
AAGCATTCACCGTCACCTTCTAATTCATAGACACAAACAACTCATGATGT
ATGTCAAAATATGGCCAAACAGCCTGCCGTAATACATTCTTGTGTTGCAC
GCAAACTCCAGATTAGAAACTGTACGTCTTTTACCGACTGCATACCAACC
TCCGTCCGTCTGTTAACTTTGCAGGCGTGCGCCCCTTTCGGAAGCTGTCT
GCCCTGCACTACAGACGCCCAATGCGCTCGACATGAGTATTGCGGCTTCA
CCTCCAGCTTTTCCTCGGGCCAGTGTGTGGTGAGTGTGGTGTTGGTCCCA
TTAACATTGGGTAGGGTGGGGAAGGGTGTAAGAATTAATCTCGCATTCCC
TGGTTTGTTTGTATTGCATACCCGGTAAACCACCTACTATATATCCGAAC
AGATTTATTTGATCCACTCACGGGAAGGCCCCCTATTCGTTTCGATAAGT
GTGGTGGGTTCTTTTTTTCGCGTGCTCAATGTGTGGCTCTCCACGAATTC
TGGACCTTCATTTAACATCCTATCCGAGGGATGTCCCTAACCGAAGCTAG
GTGCTCATTGTCAGCTGGTTGAAGTGAGGAAATTCGTGTTAAGTGCTTTG
CCCTTTCCATTCACTGTTTCTTCTGGATTCGTAGTGTGTTAAATATCTAG
CTATGTTTCTTGTCCTTCAGGGCCAGGACTGTTACAGTGACCTTGACTGT
GAGGGCGGACGTTGTAACGGCGGTGCGGTGAGACCCCGGATGCGCGGGTG
GTGCTCCCTTCCTCCCGGGATGGCTCTTGGAGCGGCACCAGTCGCCTACG
CCGCGCCAGTCGCCTATCCGGCACCCGGGCAGGTTCAAGGACCAGTTCCG
CCACCAGGACAGTATTATGGCCGCTGGCGGAAGCAAGGCGCGTCCGAAAA
TAGTGACACCAACTCTGACACACCGGAACCTGTCGACAATACTGATAACA
CCGAAGTAGCGAAATAG

Coding sequence (CDS) from alignment at Sc0000061:756518..758484-

>transcript:BL95573_evm1 ID=transcript:BL95573_evm1|Name=transcript:BL95573_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=3345bp|location=Sequence derived from alignment at Sc0000061:756518..758484- (Branchiostoma lanceolatum)
ATGATATTTGGATTTTTGCAGGACTGTGTTCCTGCCTATGAGTGTCCCAC
CATACCAGACGACTGCGTTGATCTGCAGTATCTTGCTGACTACGTCTGTA
ACGAAGGAAAGAAGTGTGTTGAACGGGGGTGTAAAGTGCCCAGAACCGGG
GAGATCATACGAAAAGGCCAGAAATCTGGAGATTGCACGTGCGAAGAGGG
CGGTAAGCTGCAGTGCGGCCAGCGGGTCAGTCCACCGGTGTTCCCGAGGC
CCCCTTCTCCAGCACCGGCGTGCGCCCCTTTCGGAAGCTGTCTGCCCTGC
ACTACAGACGCCCAATGCGCTCGACATGAGTATTGCGGCTTCACCTCCAG
CTTTTCCTCGGGCCAGTGTGTGGGCCAGGACTGTTACAGTGACCTTGACT
GTGAGGGCGGACGTTGTAACGGCGGTGCGGTGAGACCCCGGATGCGCGGG
TGGTGCTCCCTTCCTCCCGGGATGGCTCTTGGAGCGGCACCAGTCGCCTA
CGCCGCGCCAGTCGCCTATCCGGCACCCGGGCAGGTTCAAGGACCAGTTC
CGCCACCAGGACAGTATTATGGCCGCTGGCGGAAGCAAGGCGCGTCCGAA
AATAGTGACACCAACTCTGACACACCGGAACCTGTCGACAATACTGATAA
CACCGAAGTAGCGAAATAGATGATATTTGGATTTTTGCAGGACTGTGTTC
CTGCCTATGAGTGTCCCACCATACCAGACGACTGCGTTGATCTGCAGTAT
CTTGCTGACTACGTCTGTAACGAAGGAAAGAAGTGTGTTGAACGGGGGTG
TAAAGTGCCCAGAACCGGGGAGATCATACGAAAAGGCCAGAAATCTGGAG
ATTGCACGTGCGAAGAGGGCGGTAAGCTGCAGTGCGGCCAGCGGGTCAGT
CCACCGGTGTTCCCGAGGCCCCCTTCTCCAGCACCGGCGTGCGCCCCTTT
CGGAAGCTGTCTGCCCTGCACTACAGACGCCCAATGCGCTCGACATGAGT
ATTGCGGCTTCACCTCCAGCTTTTCCTCGGGCCAGTGTGTGGGCCAGGAC
TGTTACAGTGACCTTGACTGTGAGGGCGGACGTTGTAACGGCGGTGCGGT
GAGACCCCGGATGCGCGGGTGGTGCTCCCTTCCTCCCGGGATGGCTCTTG
GAGCGGCACCAGTCGCCTACGCCGCGCCAGTCGCCTATCCGGCACCCGGG
CAGGTTCAAGGACCAGTTCCGCCACCAGGACAGTATTATGGCCGCTGGCG
GAAGCAAGGCGCGTCCGAAAATAGTGACACCAACTCTGACACACCGGAAC
CTGTCGACAATACTGATAACACCGAAGTAGCGAAATAGATGATATTTGGA
TTTTTGCAGGACTGTGTTCCTGCCTATGAGTGTCCCACCATACCAGACGA
CTGCGTTGATCTGCAGTATCTTGCTGACTACGTCTGTAACGAAGGAAAGA
AGTGTGTTGAACGGGGGTGTAAAGTGCCCAGAACCGGGGAGATCATACGA
AAAGGCCAGAAATCTGGAGATTGCACGTGCGAAGAGGGCGGTAAGCTGCA
GTGCGGCCAGCGGGTCAGTCCACCGGTGTTCCCGAGGCCCCCTTCTCCAG
CACCGGCGTGCGCCCCTTTCGGAAGCTGTCTGCCCTGCACTACAGACGCC
CAATGCGCTCGACATGAGTATTGCGGCTTCACCTCCAGCTTTTCCTCGGG
CCAGTGTGTGGGCCAGGACTGTTACAGTGACCTTGACTGTGAGGGCGGAC
GTTGTAACGGCGGTGCGGTGAGACCCCGGATGCGCGGGTGGTGCTCCCTT
CCTCCCGGGATGGCTCTTGGAGCGGCACCAGTCGCCTACGCCGCGCCAGT
CGCCTATCCGGCACCCGGGCAGGTTCAAGGACCAGTTCCGCCACCAGGAC
AGTATTATGGCCGCTGGCGGAAGCAAGGCGCGTCCGAAAATAGTGACACC
AACTCTGACACACCGGAACCTGTCGACAATACTGATAACACCGAAGTAGC
GAAATAGATGATATTTGGATTTTTGCAGGACTGTGTTCCTGCCTATGAGT
GTCCCACCATACCAGACGACTGCGTTGATCTGCAGTATCTTGCTGACTAC
GTCTGTAACGAAGGAAAGAAGTGTGTTGAACGGGGGTGTAAAGTGCCCAG
AACCGGGGAGATCATACGAAAAGGCCAGAAATCTGGAGATTGCACGTGCG
AAGAGGGCGGTAAGCTGCAGTGCGGCCAGCGGGTCAGTCCACCGGTGTTC
CCGAGGCCCCCTTCTCCAGCACCGGCGTGCGCCCCTTTCGGAAGCTGTCT
GCCCTGCACTACAGACGCCCAATGCGCTCGACATGAGTATTGCGGCTTCA
CCTCCAGCTTTTCCTCGGGCCAGTGTGTGGGCCAGGACTGTTACAGTGAC
CTTGACTGTGAGGGCGGACGTTGTAACGGCGGTGCGGTGAGACCCCGGAT
GCGCGGGTGGTGCTCCCTTCCTCCCGGGATGGCTCTTGGAGCGGCACCAG
TCGCCTACGCCGCGCCAGTCGCCTATCCGGCACCCGGGCAGGTTCAAGGA
CCAGTTCCGCCACCAGGACAGTATTATGGCCGCTGGCGGAAGCAAGGCGC
GTCCGAAAATAGTGACACCAACTCTGACACACCGGAACCTGTCGACAATA
CTGATAACACCGAAGTAGCGAAATAGATGATATTTGGATTTTTGCAGGAC
TGTGTTCCTGCCTATGAGTGTCCCACCATACCAGACGACTGCGTTGATCT
GCAGTATCTTGCTGACTACGTCTGTAACGAAGGAAAGAAGTGTGTTGAAC
GGGGGTGTAAAGTGCCCAGAACCGGGGAGATCATACGAAAAGGCCAGAAA
TCTGGAGATTGCACGTGCGAAGAGGGCGGTAAGCTGCAGTGCGGCCAGCG
GGTCAGTCCACCGGTGTTCCCGAGGCCCCCTTCTCCAGCACCGGCGTGCG
CCCCTTTCGGAAGCTGTCTGCCCTGCACTACAGACGCCCAATGCGCTCGA
CATGAGTATTGCGGCTTCACCTCCAGCTTTTCCTCGGGCCAGTGTGTGGG
CCAGGACTGTTACAGTGACCTTGACTGTGAGGGCGGACGTTGTAACGGCG
GTGCGGTGAGACCCCGGATGCGCGGGTGGTGCTCCCTTCCTCCCGGGATG
GCTCTTGGAGCGGCACCAGTCGCCTACGCCGCGCCAGTCGCCTATCCGGC
ACCCGGGCAGGTTCAAGGACCAGTTCCGCCACCAGGACAGTATTATGGCC
GCTGGCGGAAGCAAGGCGCGTCCGAAAATAGTGACACCAACTCTGACACA
CCGGAACCTGTCGACAATACTGATAACACCGAAGTAGCGAAATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95573gene:BL95573Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95573_evm1transcript:BL95573_evm1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95573_evm1-E1BL95573_evm1-E1-1564476830-247295Branchiostoma lanceolatumexon
BL95573_evm1-E2BL95573_evm1-E2-1564476830-247293Branchiostoma lanceolatumexon
BL95573_evm1-E3BL95573_evm1-E3-1564476830-247291Branchiostoma lanceolatumexon
BL95573_evm1-E4BL95573_evm1-E4-1564476830-247289Branchiostoma lanceolatumexon
BL95573_evm1-E5BL95573_evm1-E5-1564476830-247287Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000061genomeSc0000061:756518..758484 -
Properties
Property NameValue
Transcript idBL95573_evm1
Biotypeprotein_coding