transcript:BL90229_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL90229_cuf0
Unique Nametranscript:BL90229_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL90229_cuf0

>transcript:BL90229_cuf0-protein ID=transcript:BL90229_cuf0-protein|Name=transcript:BL90229_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=208bp
KADKERSQHKVPADTPEIAWAKEVQRLQSQKSYTKDRPTNYIPVYDSPYI
KQAEEATKLQSYLKYSDRDAGTLHSEYRGQRYTPLETLEKKHTDDIRNIV
SDVVYKDEAKEIMQKGHSQYPFTPEMSRVEEAEKLKSDHLYQENYKKYLT
NFTIRADYPEFVFAKETSDLQSENKYRELYNKEKGQGLILPLDTMDNLHA
KEAVALAS
Run BLAST on NCBI

mRNA from alignment at Sc0000000:7645969..7648062-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL90229_cuf0 ID=transcript:BL90229_cuf0|Name=transcript:BL90229_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2094bp|location=Sequence derived from alignment at Sc0000000:7645969..7648062- (Branchiostoma lanceolatum)
AGAAGGCTGACAAGGAGAGGTCTCAGCACAAGGTGCCTGCAGACACACCT
GAGATTGCCTGGGCTAAGGAGGTGCAGCGTCTTCAGAGCCAGGTGTGTTT
GAGGAGTCCCAAACTTCTTACTAGTCCTACAGATAGTCTCTAATAATCAA
TGTTTTGTTTGAAAGTTCTTGCCCGAGGGCTAATTGCAACATGAAACAAT
GCATAGGAATGGTATATTGTACCGATAGTGTGAGTTAACAATGTTGACAA
GTGGAATAAATGGCTATTCTAAGAACTACTACGGGATACAATCTANAATT
GCAGCATGAAACAATGCATAGGAATGGTATATTGCACCGATAGTGTGAGT
TAACAATGTTGACAAGTGGAATAAATGGCTATTCTAAGAACTACTACGGG
ATACAATCTACGCTTTTTGGGTCTGACTAAAAATGTTGCTCATGACCACG
ATTGTCTTTTACAGAAAAGCTACACCAAGGACAGGCCAACCAACTACATC
CCTGTGTACGACTCTCCCTACATCAAACAGGCAGAGGAGGCCACCAAACT
GCAGAGCTATGTACGTAGCATCTTTAATCATTATTCGTAAGAAATAAATT
TTATAAAGTTTTAGCAAATCTGACAAATATTGTTTTTTTGGTAAAAATTT
GAGTGACACAAATAAAAAGAATAGTTTGAAGCAAAAATAGATTATGATAA
GATCTTTAAAAGCATTGCCTGAATGTGTATGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGATTACATCATG
GCCTCTACCATACGTGAAGGAGGTGAAGTCTGCCATCTCTGATTGTCTTG
TTCTTTGATTGTTTAAAAAACAGCTCAAGTACAGCGACCGTGATGCCGGC
ACTCTACACTCAGAGTACCGCGGTCAGCGCTACACGCCTCTGGAAACTCT
GGAGAAAAAGCACACGGACGACATCAGGAACATCGTCAGCGATGTGGTGT
ACAAGGATGAGGCTAAGGAGATCATGCAGAAGGGACACAGTCAGTACCCC
TTCACTCCTGAGATGTCTCGAGTGGAGGAAGCTGAGAAACTTAAATCAGA
TGTAAGTACTTGACCTTTCTTTTCAGCGAAGAATTGAACGCATGTTGTTT
AGATTGCTTGCATAATTTTTTGGCAATACCTTGGTTCTCATAAAGTTATG
ATATTATAAATGTATCTTAGTTTAAATTGCACATTTTTTCACTTTTTGGG
TGGGCAGGAGCAAAAATGTGGAACAGTGTTGGATGTTTCCAAGTTAGGGT
CAATATGTTATGATCTGTTTTTGTTTTATGAAACCTGATTTAAAGTATGG
AATGTCTTCTTCACAGCATCTGTACCAGGAGAACTACAAGAAGTACCTGA
CAAACTTCACCATCCGTGCTGACTACCCGGAATTTGTGTTTGCCAAGGAA
ACTTCAGATCTGCAGAGTGAGGTAAGAACTTATAATAAGAACATCTTTTA
AAACATTAGAATATTTAGAGCAATTTGGACAGAACATTTAGAACTTTGTA
TGTATGCTATATGTTCTCTCAAAGCAACTGGCCATGCTCTGGTGATTAAA
AAAAAGCCTGATGAGAATATGTTATGTTCTGGAGCTGTTTGGGCCATGTG
AAACAAGAAAGATCTGATTCAATTTTTCTTGCTTTATTTATGACCTTTGA
CATTCTATCTTTCATCTATTCTTACATTCAGTGTAGAAAAGAAGATTATA
TTTCCCTATAAATACCTTGTATGTCAGATATCAAAACTTGGGGTTAGGCA
GACATTTTGGGGGTCCTCACCCCAAATGATATGGGAAAAGGGGTGAAAGG
TCACTCCTTATAACCCCTTGTCACTCCTTGGGTCCAGGTAAAATGGGATG
AGGACCCCATATGTTTAACCCCAAATCCAGTTGGTAGTAGGGAGTTACCT
GCTGATTATAGTGTTTTTTTGTTTGCTTTTGCTTTCAGAACAAGTATCGT
GAGCTGTACAACAAGGAAAAGGGACAAGGTCTTATACTGCCCCTGGATAC
CATGGACAACCTCCATGCTAAGGAGGCTGTAGCACTGGCCAGCG

Coding sequence (CDS) from alignment at Sc0000000:7645969..7648062-

>transcript:BL90229_cuf0 ID=transcript:BL90229_cuf0|Name=transcript:BL90229_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=3120bp|location=Sequence derived from alignment at Sc0000000:7645969..7648062- (Branchiostoma lanceolatum)
AAGGCTGACAAGGAGAGGTCTCAGCACAAGGTGCCTGCAGACACACCTGA
GATTGCCTGGGCTAAGGAGGTGCAGCGTCTTCAGAGCCAGAAAAGCTACA
CCAAGGACAGGCCAACCAACTACATCCCTGTGTACGACTCTCCCTACATC
AAACAGGCAGAGGAGGCCACCAAACTGCAGAGCTATCTCAAGTACAGCGA
CCGTGATGCCGGCACTCTACACTCAGAGTACCGCGGTCAGCGCTACACGC
CTCTGGAAACTCTGGAGAAAAAGCACACGGACGACATCAGGAACATCGTC
AGCGATGTGGTGTACAAGGATGAGGCTAAGGAGATCATGCAGAAGGGACA
CAGTCAGTACCCCTTCACTCCTGAGATGTCTCGAGTGGAGGAAGCTGAGA
AACTTAAATCAGATCATCTGTACCAGGAGAACTACAAGAAGTACCTGACA
AACTTCACCATCCGTGCTGACTACCCGGAATTTGTGTTTGCCAAGGAAAC
TTCAGATCTGCAGAGTGAGAACAAGTATCGTGAGCTGTACAACAAGGAAA
AGGGACAAGGTCTTATACTGCCCCTGGATACCATGGACAACCTCCATGCT
AAGGAGGCTGTAGCACTGGCCAGCAAGGCTGACAAGGAGAGGTCTCAGCA
CAAGGTGCCTGCAGACACACCTGAGATTGCCTGGGCTAAGGAGGTGCAGC
GTCTTCAGAGCCAGAAAAGCTACACCAAGGACAGGCCAACCAACTACATC
CCTGTGTACGACTCTCCCTACATCAAACAGGCAGAGGAGGCCACCAAACT
GCAGAGCTATCTCAAGTACAGCGACCGTGATGCCGGCACTCTACACTCAG
AGTACCGCGGTCAGCGCTACACGCCTCTGGAAACTCTGGAGAAAAAGCAC
ACGGACGACATCAGGAACATCGTCAGCGATGTGGTGTACAAGGATGAGGC
TAAGGAGATCATGCAGAAGGGACACAGTCAGTACCCCTTCACTCCTGAGA
TGTCTCGAGTGGAGGAAGCTGAGAAACTTAAATCAGATCATCTGTACCAG
GAGAACTACAAGAAGTACCTGACAAACTTCACCATCCGTGCTGACTACCC
GGAATTTGTGTTTGCCAAGGAAACTTCAGATCTGCAGAGTGAGAACAAGT
ATCGTGAGCTGTACAACAAGGAAAAGGGACAAGGTCTTATACTGCCCCTG
GATACCATGGACAACCTCCATGCTAAGGAGGCTGTAGCACTGGCCAGCAA
GGCTGACAAGGAGAGGTCTCAGCACAAGGTGCCTGCAGACACACCTGAGA
TTGCCTGGGCTAAGGAGGTGCAGCGTCTTCAGAGCCAGAAAAGCTACACC
AAGGACAGGCCAACCAACTACATCCCTGTGTACGACTCTCCCTACATCAA
ACAGGCAGAGGAGGCCACCAAACTGCAGAGCTATCTCAAGTACAGCGACC
GTGATGCCGGCACTCTACACTCAGAGTACCGCGGTCAGCGCTACACGCCT
CTGGAAACTCTGGAGAAAAAGCACACGGACGACATCAGGAACATCGTCAG
CGATGTGGTGTACAAGGATGAGGCTAAGGAGATCATGCAGAAGGGACACA
GTCAGTACCCCTTCACTCCTGAGATGTCTCGAGTGGAGGAAGCTGAGAAA
CTTAAATCAGATCATCTGTACCAGGAGAACTACAAGAAGTACCTGACAAA
CTTCACCATCCGTGCTGACTACCCGGAATTTGTGTTTGCCAAGGAAACTT
CAGATCTGCAGAGTGAGAACAAGTATCGTGAGCTGTACAACAAGGAAAAG
GGACAAGGTCTTATACTGCCCCTGGATACCATGGACAACCTCCATGCTAA
GGAGGCTGTAGCACTGGCCAGCAAGGCTGACAAGGAGAGGTCTCAGCACA
AGGTGCCTGCAGACACACCTGAGATTGCCTGGGCTAAGGAGGTGCAGCGT
CTTCAGAGCCAGAAAAGCTACACCAAGGACAGGCCAACCAACTACATCCC
TGTGTACGACTCTCCCTACATCAAACAGGCAGAGGAGGCCACCAAACTGC
AGAGCTATCTCAAGTACAGCGACCGTGATGCCGGCACTCTACACTCAGAG
TACCGCGGTCAGCGCTACACGCCTCTGGAAACTCTGGAGAAAAAGCACAC
GGACGACATCAGGAACATCGTCAGCGATGTGGTGTACAAGGATGAGGCTA
AGGAGATCATGCAGAAGGGACACAGTCAGTACCCCTTCACTCCTGAGATG
TCTCGAGTGGAGGAAGCTGAGAAACTTAAATCAGATCATCTGTACCAGGA
GAACTACAAGAAGTACCTGACAAACTTCACCATCCGTGCTGACTACCCGG
AATTTGTGTTTGCCAAGGAAACTTCAGATCTGCAGAGTGAGAACAAGTAT
CGTGAGCTGTACAACAAGGAAAAGGGACAAGGTCTTATACTGCCCCTGGA
TACCATGGACAACCTCCATGCTAAGGAGGCTGTAGCACTGGCCAGCAAGG
CTGACAAGGAGAGGTCTCAGCACAAGGTGCCTGCAGACACACCTGAGATT
GCCTGGGCTAAGGAGGTGCAGCGTCTTCAGAGCCAGAAAAGCTACACCAA
GGACAGGCCAACCAACTACATCCCTGTGTACGACTCTCCCTACATCAAAC
AGGCAGAGGAGGCCACCAAACTGCAGAGCTATCTCAAGTACAGCGACCGT
GATGCCGGCACTCTACACTCAGAGTACCGCGGTCAGCGCTACACGCCTCT
GGAAACTCTGGAGAAAAAGCACACGGACGACATCAGGAACATCGTCAGCG
ATGTGGTGTACAAGGATGAGGCTAAGGAGATCATGCAGAAGGGACACAGT
CAGTACCCCTTCACTCCTGAGATGTCTCGAGTGGAGGAAGCTGAGAAACT
TAAATCAGATCATCTGTACCAGGAGAACTACAAGAAGTACCTGACAAACT
TCACCATCCGTGCTGACTACCCGGAATTTGTGTTTGCCAAGGAAACTTCA
GATCTGCAGAGTGAGAACAAGTATCGTGAGCTGTACAACAAGGAAAAGGG
ACAAGGTCTTATACTGCCCCTGGATACCATGGACAACCTCCATGCTAAGG
AGGCTGTAGCACTGGCCAGC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL90229gene:BL90229Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL90229_cuf0transcript:BL90229_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL90229_cuf0-E1BL90229_cuf0-E1-1564476830-17019Branchiostoma lanceolatumexon
BL90229_cuf0-E2BL90229_cuf0-E2-1564476830-17016Branchiostoma lanceolatumexon
BL90229_cuf0-E3BL90229_cuf0-E3-1564476830-17014Branchiostoma lanceolatumexon
BL90229_cuf0-E4BL90229_cuf0-E4-1564476830-17012Branchiostoma lanceolatumexon
BL90229_cuf0-E5BL90229_cuf0-E5-1564476830-17010Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000000genomeSc0000000:7645969..7648062 -
Properties
Property NameValue
Transcript idBL90229_cuf0
Biotypeprotein_coding