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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL90206_cuf0 >transcript:BL90206_cuf0-protein ID=transcript:BL90206_cuf0-protein|Name=transcript:BL90206_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=1169bp
RPRIHRITNNLLRMQDKTTTLWPNDYLELQLPDGLDTYPDVALEPRQDSL
SCEHLKAFRQGTYRNIAGYIRVPNVSCAPVNVTKNMHLFNATPVVPVEDI
LPDNELPTQDTLPAHIPEPQPFSDSVQLDPDNILNSTQRYRMSSMLQDFD
NVFNTDFPGYNGAVGPIHAVVNMGPAQPPQRKGRLPLYGRNRLVELQQKL
DELETHGVISTPESADTVVEYLNPSFLVNKPKGGHRLVTAFTDVAKYCKP
QPSLLPNVNQVMRQIACWKYLIVSDLTSAYHQIPLHPSSRKYCGIVTPFK
GIRVYCRSAMGMPGSETALEELMSRTLGDLLMRGMVAKIADDLYCGGNTY
EELLTNWSAVLTALQNCDLRLSPSKTIICPAKTTILGWHWDQGKISASHH
TLCTLSTTPPPPSVTALRSFIGSYKALSRVIPGTSVLLGPLDDMVAGRSS
SDMIQWTDDQLSVFRKAQQGLKSHQAVVLPRPDDELWLVTDAAVRPTGIG
ATLFIRRDNNTRVAGFFSCKLKKYQRQWLPCELEALAITSALKHFKPYLI
QTTMPAFILTDSKPCVEAVEKLRRGEFSYSPRVSTFLAAVSQFPITVKHI
SGKYNLSTDFASRHPLDCADSHCQICSFVHALSEEPVVNTATVSPDTDLN
NPIYTSRSAWSTIQSSCPSLRRVFAHLKQGTRPSKKETHIRDIKSYLAKA
TITTDGLLVVPNRDMFGMTRDRIIVPRNVVHGLTTAIHLKLGHPSQHQLK
AVMSRYFYALGMDTVIQKVTAACDQCAALKCHIPVPPTFTTQPPPQTILA
TFAADVMKRARQNILVVRECSTSYTSTQIVPDETSTALRDGLITLCAPLC
PLDGPPAVIRCDPAPGFQALTQDTWLAENHLQIEIGEFKNINKNPVAERA
IEEMREELCKVDPLGQPVSPAQLAVITARVNAKVRSNGLSSREYLFQRDQ
FNGEQIPLSDKSLLAKQNQRRLDNHTPSSKSKASTRQVRPAPLITVGDLV
YLHADRDKSQARNRYIVTAVNRDFVHISKFIGRQLRSRTYKVRPAECYLV
PSQVSPQHRHPTYSETDSDEDDAVSDEHENFVVPPDIPATPPAVPEQNHH
QNIPAPTGIPVTPPAVPEQNLQQNFPAPSEFPATPPAVPERTLSDPPSSP
RRSGRLTQQPSYLKDFELS Run BLAST on NCBI mRNA from alignment at Sc0000012:3907376..3911661+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL90206_cuf0 ID=transcript:BL90206_cuf0|Name=transcript:BL90206_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4286bp|location=Sequence derived from alignment at Sc0000012:3907376..3911661+ (Branchiostoma lanceolatum)
CCGGCCACGTATACACCGCATCACCAACAATTTGCTCCGCATGCAAGATA
AAACGACTACGCTATGGCCTAATGACTACTTGGAGCTCCAACTACCAGAT
GGGCTAGATACTTACCCAGATGTTGCTCTGGAACCACGACAGGACTCTCT
GTCTTGTGAACACTTGAAGGCATTCCGGCAGGGAACTTACCGGAACATAG
CTGGCTACATTAGAGTACCCAACGTTTCCTGTGCACCAGTTAACGTGACC
AAGAACATGCACCTGTTTAATGCAACCCCAGTAGTCCCGGTTGAAGACAT
TCTACCAGACAATGAGTTACCCACACAAGACACACTGCCTGCTCACATCC
CAGAGCCCCAGCCCTTTTCTGACTCAGTCCAGTTAGACCCGGACAATATC
CTGAATTCCACACAACGATACCGTATGTCGTCCATGCTTCAAGACTTTGA
CAACGTTTTCAATACAGACTTTCCAGGCTACAATGGAGCAGTCGGCCCCA
TCCATGCAGTCGTTAACATGGGTCCCGCACAACCCCCACAGCGAAAAGGA
CGTCTCCCACTCTATGGAAGAAACCGCTTGGTAGAACTACAGCAGAAGCT
GGATGAGCTTGAGACACATGGGGTGATTTCTACGCCGGAGTCTGCTGACA
CAGTGGTAGAATACCTCAACCCCTCATTCTTGGTCAATAAACCAAAAGGT
GGTCACCGATTGGTCACTGCATTCACTGATGTCGCCAAATACTGTAAGCC
CCAGCCGTCGTTACTCCCAAATGTCAATCAGGTCATGCGCCAAATTGCAT
GCTGGAAGTACCTTATAGTATCTGACTTGACCTCCGCTTATCACCAGATT
CCCTTACACCCATCCTCACGCAAGTATTGCGGTATTGTCACTCCATTCAA
AGGAATCAGAGTTTACTGTCGCAGTGCCATGGGCATGCCTGGTAGTGAAA
CAGCATTGGAGGAACTCATGTCACGCACTTTGGGGGATTTATTGATGCGT
GGAATGGTTGCAAAGATAGCAGATGACCTGTACTGCGGTGGAAACACCTA
TGAAGAGCTGCTTACCAACTGGAGTGCTGTCCTGACAGCATTACAGAACT
GTGACCTGCGACTGTCTCCATCCAAGACAATCATCTGCCCAGCCAAAACA
ACAATACTTGGTTGGCACTGGGACCAGGGCAAGATATCAGCCTCACACCA
CACCTTGTGTACTTTGTCTACAACCCCTCCACCTCCATCTGTGACTGCCC
TGAGATCGTTCATTGGATCCTACAAAGCCCTGTCCCGTGTCATCCCAGGC
ACGTCAGTCTTGCTAGGTCCATTGGATGATATGGTAGCAGGCCGTTCCTC
CAGCGACATGATCCAGTGGACAGATGACCAGCTCTCAGTGTTCCGCAAGG
CTCAGCAGGGCCTTAAGTCACATCAAGCTGTTGTCCTTCCCAGACCAGAT
GATGAACTTTGGCTTGTCACCGACGCAGCAGTGAGACCCACAGGGATAGG
GGCTACGCTGTTTATTCGCAGAGACAACAACACTAGGGTAGCTGGATTCT
TCAGTTGCAAACTCAAAAAGTACCAACGTCAGTGGTTACCCTGTGAACTG
GAAGCCCTTGCAATAACCTCCGCCCTGAAACATTTCAAGCCTTACCTCAT
TCAAACCACTATGCCTGCATTCATCCTTACTGATTCCAAACCATGCGTCG
AGGCAGTTGAGAAGCTACGACGTGGTGAATTCTCGTACAGCCCAAGAGTA
TCTACCTTCTTGGCAGCAGTCAGCCAGTTTCCCATCACCGTCAAACACAT
CAGTGGTAAATACAACCTTTCCACTGATTTTGCAAGCAGACACCCCTTGG
ATTGTGCTGACAGCCATTGCCAAATATGTTCCTTTGTACATGCTCTGAGC
GAAGAACCGGTAGTTAACACAGCTACTGTCAGCCCTGACACAGACCTCAA
TAACCCAATCTACACCAGCCGCAGTGCCTGGAGTACTATCCAGAGCTCTT
GTCCCTCCCTACGTCGTGTCTTCGCCCACCTTAAGCAAGGCACACGTCCA
TCTAAAAAAGAAACGCACATCCGGGACATCAAATCGTACCTGGCAAAGGC
CACCATTACCACTGACGGCCTCTTGGTTGTTCCCAATAGAGACATGTTTG
GTATGACAAGAGACAGGATTATAGTCCCCCGTAACGTAGTGCACGGCCTT
ACCACAGCTATACATCTCAAGCTAGGACATCCTTCTCAACACCAGCTCAA
GGCGGTTATGTCTCGATACTTCTATGCCCTGGGCATGGATACTGTTATCC
AGAAGGTCACAGCAGCTTGCGATCAATGTGCTGCTCTCAAATGCCACATC
CCTGTTCCTCCTACCTTCACGACTCAGCCTCCTCCCCAGACCATCCTAGC
TACCTTCGCAGCAGATGTCATGAAACGAGCGCGGCAGAATATCCTTGTCG
TCAGAGAGTGCAGTACCTCTTATACGTCCACCCAGATCGTCCCTGACGAA
ACTTCAACCGCTCTCCGTGATGGACTCATTACCTTATGTGCACCCCTCTG
CCCTCTGGACGGTCCTCCTGCAGTCATCCGCTGCGATCCAGCACCTGGAT
TCCAGGCCCTGACCCAGGATACCTGGCTAGCCGAAAACCACCTTCAAATC
GAAATAGGGGAGTTCAAAAACATCAACAAAAACCCAGTTGCAGAACGGGC
GATCGAGGAGATGAGAGAAGAACTCTGCAAAGTAGACCCCCTTGGCCAAC
CAGTATCTCCTGCTCAACTTGCTGTAATAACAGCACGTGTTAATGCTAAA
GTTCGTTCAAATGGCCTATCGTCTCGTGAATACCTTTTCCAAAGAGATCA
GTTCAATGGAGAACAAATCCCATTATCTGACAAATCTCTCCTAGCCAAAC
AGAACCAACGTCGATTGGACAATCACACGCCTAGTTCCAAATCGAAAGCA
TCCACGAGACAGGTCAGGCCCGCCCCCCTTATCACTGTTGGTGACTTGGT
CTACCTCCATGCCGACAGAGATAAGTCCCAGGCCCGCAACAGATACATAG
TTACCGCTGTGAATAGAGACTTTGTGCACATTTCCAAATTCATCGGCCGC
CAACTGAGATCTCGGACCTACAAAGTTCGCCCTGCAGAATGTTACTTAGT
CCCCAGCCAGGTCTCACCCCAACACCGCCATCCAACATACAGTGAGACTG
ATTCCGATGAAGATGACGCAGTCAGCGATGAACATGAGAACTTTGTGGTA
CCTCCAGACATTCCTGCCACTCCACCTGCAGTACCAGAACAAAACCATCA
CCAGAACATCCCGGCACCAACAGGCATTCCTGTCACTCCACCCGCAGTAC
CAGAGCAGAACCTGCAGCAGAACTTCCCGGCACCATCAGAGTTTCCAGCC
ACCCCTCCTGCCGTACCAGAACGAACTCTGTCAGACCCCCCCTCATCACC
GCGGCGGTCAGGCCGGCTTACTCAACAACCATCTTACCTCAAAGACTTTG
AACTTTCATAACCCCAACATCGAACATTTACAGAACTCTGATAGTTATTT
CACATAGCCATATAACATTGTATTCGAATACAGGGAGATTTTCTGCAAGT
AGTAAATTTATTCTGTGCCTTTATGACCCAATATGAAACACTTACAGAAC
TCTGATATTTATTTTACATGATCATATGATGTTGATTTAATATGCAGTAA
GTATTCTGTCAAGTAGTAGATTTAAATTACTCAGTTAAATTAGAAGACAT
GACAACTCCAGGTAGTAGATCACTCCGTTAAATTACAAGGCATGACAAGT
AATTCCAAGTACTAAGTAGTAAACCTAAGTCACTCTGTTAAAATGGAAGA
CAGGACAAGTAACTCCAAGTAGTAGACTTAGTCACTTTGTTAAATTAGAA
GGCAGGACAAGTTACATTTGTGGTTAGAAACATTATTTCCATTCTTCTAT
AAGGTCACACATGTGTTAGATTTAGAACGTTTCCAGTTGACAGTTATTCG
TTCAAAGAGAAACATAGAAAAAGTAGACGGCAGAAAAACATTTCTCTGTA
TAACTATAACACTAGTTACTTTCTCGCAGTCACAGAAACGTTCTCGTTAC
AAAAGAAGTAAGCTTTCTCTTTACAGTTGAAGAAGAAAGTAGATCACGCC
AATATATAGATATTGTTATTAGGTTGACCTAGGTCATGACCCCTGATGCT
ATAGGTCACCTCGTGTTGCGTGGCGGCCATCTTGTCGGCCATATTGTATT
CCTTGATTTTGGTCACCATTAAAGTGTGCTCGGTTC Coding sequence (CDS) from alignment at Sc0000012:3907376..3911661+ >transcript:BL90206_cuf0 ID=transcript:BL90206_cuf0|Name=transcript:BL90206_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=3510bp|location=Sequence derived from alignment at Sc0000012:3907376..3911661+ (Branchiostoma lanceolatum)
CGGCCACGTATACACCGCATCACCAACAATTTGCTCCGCATGCAAGATAA
AACGACTACGCTATGGCCTAATGACTACTTGGAGCTCCAACTACCAGATG
GGCTAGATACTTACCCAGATGTTGCTCTGGAACCACGACAGGACTCTCTG
TCTTGTGAACACTTGAAGGCATTCCGGCAGGGAACTTACCGGAACATAGC
TGGCTACATTAGAGTACCCAACGTTTCCTGTGCACCAGTTAACGTGACCA
AGAACATGCACCTGTTTAATGCAACCCCAGTAGTCCCGGTTGAAGACATT
CTACCAGACAATGAGTTACCCACACAAGACACACTGCCTGCTCACATCCC
AGAGCCCCAGCCCTTTTCTGACTCAGTCCAGTTAGACCCGGACAATATCC
TGAATTCCACACAACGATACCGTATGTCGTCCATGCTTCAAGACTTTGAC
AACGTTTTCAATACAGACTTTCCAGGCTACAATGGAGCAGTCGGCCCCAT
CCATGCAGTCGTTAACATGGGTCCCGCACAACCCCCACAGCGAAAAGGAC
GTCTCCCACTCTATGGAAGAAACCGCTTGGTAGAACTACAGCAGAAGCTG
GATGAGCTTGAGACACATGGGGTGATTTCTACGCCGGAGTCTGCTGACAC
AGTGGTAGAATACCTCAACCCCTCATTCTTGGTCAATAAACCAAAAGGTG
GTCACCGATTGGTCACTGCATTCACTGATGTCGCCAAATACTGTAAGCCC
CAGCCGTCGTTACTCCCAAATGTCAATCAGGTCATGCGCCAAATTGCATG
CTGGAAGTACCTTATAGTATCTGACTTGACCTCCGCTTATCACCAGATTC
CCTTACACCCATCCTCACGCAAGTATTGCGGTATTGTCACTCCATTCAAA
GGAATCAGAGTTTACTGTCGCAGTGCCATGGGCATGCCTGGTAGTGAAAC
AGCATTGGAGGAACTCATGTCACGCACTTTGGGGGATTTATTGATGCGTG
GAATGGTTGCAAAGATAGCAGATGACCTGTACTGCGGTGGAAACACCTAT
GAAGAGCTGCTTACCAACTGGAGTGCTGTCCTGACAGCATTACAGAACTG
TGACCTGCGACTGTCTCCATCCAAGACAATCATCTGCCCAGCCAAAACAA
CAATACTTGGTTGGCACTGGGACCAGGGCAAGATATCAGCCTCACACCAC
ACCTTGTGTACTTTGTCTACAACCCCTCCACCTCCATCTGTGACTGCCCT
GAGATCGTTCATTGGATCCTACAAAGCCCTGTCCCGTGTCATCCCAGGCA
CGTCAGTCTTGCTAGGTCCATTGGATGATATGGTAGCAGGCCGTTCCTCC
AGCGACATGATCCAGTGGACAGATGACCAGCTCTCAGTGTTCCGCAAGGC
TCAGCAGGGCCTTAAGTCACATCAAGCTGTTGTCCTTCCCAGACCAGATG
ATGAACTTTGGCTTGTCACCGACGCAGCAGTGAGACCCACAGGGATAGGG
GCTACGCTGTTTATTCGCAGAGACAACAACACTAGGGTAGCTGGATTCTT
CAGTTGCAAACTCAAAAAGTACCAACGTCAGTGGTTACCCTGTGAACTGG
AAGCCCTTGCAATAACCTCCGCCCTGAAACATTTCAAGCCTTACCTCATT
CAAACCACTATGCCTGCATTCATCCTTACTGATTCCAAACCATGCGTCGA
GGCAGTTGAGAAGCTACGACGTGGTGAATTCTCGTACAGCCCAAGAGTAT
CTACCTTCTTGGCAGCAGTCAGCCAGTTTCCCATCACCGTCAAACACATC
AGTGGTAAATACAACCTTTCCACTGATTTTGCAAGCAGACACCCCTTGGA
TTGTGCTGACAGCCATTGCCAAATATGTTCCTTTGTACATGCTCTGAGCG
AAGAACCGGTAGTTAACACAGCTACTGTCAGCCCTGACACAGACCTCAAT
AACCCAATCTACACCAGCCGCAGTGCCTGGAGTACTATCCAGAGCTCTTG
TCCCTCCCTACGTCGTGTCTTCGCCCACCTTAAGCAAGGCACACGTCCAT
CTAAAAAAGAAACGCACATCCGGGACATCAAATCGTACCTGGCAAAGGCC
ACCATTACCACTGACGGCCTCTTGGTTGTTCCCAATAGAGACATGTTTGG
TATGACAAGAGACAGGATTATAGTCCCCCGTAACGTAGTGCACGGCCTTA
CCACAGCTATACATCTCAAGCTAGGACATCCTTCTCAACACCAGCTCAAG
GCGGTTATGTCTCGATACTTCTATGCCCTGGGCATGGATACTGTTATCCA
GAAGGTCACAGCAGCTTGCGATCAATGTGCTGCTCTCAAATGCCACATCC
CTGTTCCTCCTACCTTCACGACTCAGCCTCCTCCCCAGACCATCCTAGCT
ACCTTCGCAGCAGATGTCATGAAACGAGCGCGGCAGAATATCCTTGTCGT
CAGAGAGTGCAGTACCTCTTATACGTCCACCCAGATCGTCCCTGACGAAA
CTTCAACCGCTCTCCGTGATGGACTCATTACCTTATGTGCACCCCTCTGC
CCTCTGGACGGTCCTCCTGCAGTCATCCGCTGCGATCCAGCACCTGGATT
CCAGGCCCTGACCCAGGATACCTGGCTAGCCGAAAACCACCTTCAAATCG
AAATAGGGGAGTTCAAAAACATCAACAAAAACCCAGTTGCAGAACGGGCG
ATCGAGGAGATGAGAGAAGAACTCTGCAAAGTAGACCCCCTTGGCCAACC
AGTATCTCCTGCTCAACTTGCTGTAATAACAGCACGTGTTAATGCTAAAG
TTCGTTCAAATGGCCTATCGTCTCGTGAATACCTTTTCCAAAGAGATCAG
TTCAATGGAGAACAAATCCCATTATCTGACAAATCTCTCCTAGCCAAACA
GAACCAACGTCGATTGGACAATCACACGCCTAGTTCCAAATCGAAAGCAT
CCACGAGACAGGTCAGGCCCGCCCCCCTTATCACTGTTGGTGACTTGGTC
TACCTCCATGCCGACAGAGATAAGTCCCAGGCCCGCAACAGATACATAGT
TACCGCTGTGAATAGAGACTTTGTGCACATTTCCAAATTCATCGGCCGCC
AACTGAGATCTCGGACCTACAAAGTTCGCCCTGCAGAATGTTACTTAGTC
CCCAGCCAGGTCTCACCCCAACACCGCCATCCAACATACAGTGAGACTGA
TTCCGATGAAGATGACGCAGTCAGCGATGAACATGAGAACTTTGTGGTAC
CTCCAGACATTCCTGCCACTCCACCTGCAGTACCAGAACAAAACCATCAC
CAGAACATCCCGGCACCAACAGGCATTCCTGTCACTCCACCCGCAGTACC
AGAGCAGAACCTGCAGCAGAACTTCCCGGCACCATCAGAGTTTCCAGCCA
CCCCTCCTGCCGTACCAGAACGAACTCTGTCAGACCCCCCCTCATCACCG
CGGCGGTCAGGCCGGCTTACTCAACAACCATCTTACCTCAAAGACTTTGA
ACTTTCATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000012 | genome | Sc0000012:3907376..3911661 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL90206_cuf0 |
| Biotype | protein_coding |
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