transcript:BL87552_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL87552_cuf0
Unique Nametranscript:BL87552_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL87552_cuf0

>transcript:BL87552_cuf0-protein ID=transcript:BL87552_cuf0-protein|Name=transcript:BL87552_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=168bp
RITLPYIKTVSEPLRRIFASHGISTSFKPTNTLRQLLVAPKDKTPREEKC
GVVYHIPCQGTTRQGTCEEFYIGETERSLRTRFLEHKRPSSHSSEVSQHI
HIESPGHTVSLDKVRILDTEQDYFMRGIKEAIYIRALQPSLNRDSGRYKL
PGTFDQLLTSRIRSDTCQ
Run BLAST on NCBI

mRNA from alignment at Sc0000002:7885829..7886507+

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL87552_cuf0 ID=transcript:BL87552_cuf0|Name=transcript:BL87552_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=679bp|location=Sequence derived from alignment at Sc0000002:7885829..7886507+ (Branchiostoma lanceolatum)
CGCATCACCCTTCCGTACATCAAGACCGTCTCAGAACCCCTGCGCAGAAT
ATTTGCTTCACACGGGATCTCCACCAGCTTCAAACCTACGAACACACTGC
GACAGCTTCTCGTGGCGCCGAAGGACAAAACCCCAAGAGAAGAGAAGTGC
GGCGTAGTGTACCACATTCCGTGTCAGGGAACCACTAGACAAGGGACTTG
TGAAGAATTCTACATTGGTGAGACAGAACGCTCATTGAGAACTAGATTCC
TTGAACACAAACGCCCCAGCTCGCATTCGTCTGAAGTCTCTCAACACATC
CACATTGAATCTCCGGGCCATACCGTTTCGCTGGACAAAGTCAGAATTCT
GGACACTGAACAGGACTACTTTATGAGAGGTATAAAGGAGGCCATATATA
TCAGGGCACTCCAGCCGTCACTCAACAGAGACAGTGGGCGTTATAAACTT
CCTGGCACGTTTGACCAATTGCTGACGTCACGTATCCGCAGTGACACGTG
TCAATAGAGTCACGTGTCCGTAACTCTCGCGAGTTTACGTTCGGCAGTGA
TTGGTCATTATTGATCCTGAAGAAGGCGACAGTGGTCGTCGAAAATTCGA
TCCGTGAATACCTTAGTGTTGGAAGAAAGTTTAGCATTGTATTATGATTA
CTACCAACACAGATGAGCTTTCATTATAA

Coding sequence (CDS) from alignment at Sc0000002:7885829..7886507+

>transcript:BL87552_cuf0 ID=transcript:BL87552_cuf0|Name=transcript:BL87552_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=507bp|location=Sequence derived from alignment at Sc0000002:7885829..7886507+ (Branchiostoma lanceolatum)
CGCATCACCCTTCCGTACATCAAGACCGTCTCAGAACCCCTGCGCAGAAT
ATTTGCTTCACACGGGATCTCCACCAGCTTCAAACCTACGAACACACTGC
GACAGCTTCTCGTGGCGCCGAAGGACAAAACCCCAAGAGAAGAGAAGTGC
GGCGTAGTGTACCACATTCCGTGTCAGGGAACCACTAGACAAGGGACTTG
TGAAGAATTCTACATTGGTGAGACAGAACGCTCATTGAGAACTAGATTCC
TTGAACACAAACGCCCCAGCTCGCATTCGTCTGAAGTCTCTCAACACATC
CACATTGAATCTCCGGGCCATACCGTTTCGCTGGACAAAGTCAGAATTCT
GGACACTGAACAGGACTACTTTATGAGAGGTATAAAGGAGGCCATATATA
TCAGGGCACTCCAGCCGTCACTCAACAGAGACAGTGGGCGTTATAAACTT
CCTGGCACGTTTGACCAATTGCTGACGTCACGTATCCGCAGTGACACGTG
TCAATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL87552gene:BL87552Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL87552_cuf0-E1BL87552_cuf0-E1-1564476830-39075Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL87552_cuf0transcript:BL87552_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000002genomeSc0000002:7885829..7886507 +
Properties
Property NameValue
Transcript idBL87552_cuf0
Biotypeprotein_coding