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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL87314_cuf3 >transcript:BL87314_cuf3-protein ID=transcript:BL87314_cuf3-protein|Name=transcript:BL87314_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=113bp
SRGRATGEIFVDDGHSFKYRDNNRFLHKNYLFENNKLISRTLDMNGKFET
KSWVERIVIIGLPKAPTTITIDGIRDIMIDKKNLEFRYTPDTQTLVIRKP
AVNVAQNWSITLQ Run BLAST on NCBI mRNA from alignment at Sc0000047:1755453..1759624+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL87314_cuf3 ID=transcript:BL87314_cuf3|Name=transcript:BL87314_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=4172bp|location=Sequence derived from alignment at Sc0000047:1755453..1759624+ (Branchiostoma lanceolatum)
AGCAGGTATGTTAACCTGTCATTTGTATTTCTTTCTGTTCTGGGTCAAAA
TGTCTAGAAATGCTAGTCTATGCAATTTACTTTGCTGGCATTTGCGTCTT
GTTTGTTGATCCTCATGATCACTCTTGTAGATAGGAGTGGCTCGGCCAAA
ACAAAAGCATTTGCAGATTTGAGCTTTTTCAAATTAAAGCTTTTACATGT
TATGTGTTTGGGCCCAGGTTAGCAATCCAAAGTTATGATCATAAATCCTA
AAATCTTGGCAAAAAAACAGCAAGGGAACTTGCCTCTTGGCACAAAAAGG
GGACATTTACTTTTATTAACCTTTTATGATGTTCTGCCTGGTATCTTCCT
CTGCAGGGAAGAGCAACTGGTGAAATATTTGTGGATGACGGCCACAGCTT
CAAGTACCGGGACAACAACAGGTTCCTGCACAAGAACTATCTTTTTGAAA
ACAACAAACTTATATCAAGGTGAGACATCCATTGAAAATTCAAGCCATAT
GGGAAATCAAGACGTGCCATATATTTCCTGGTGCTTTCAGGACTTTCTTG
CTTTCCGTTTCTAGCTTTTTTTGCATATTTATGATGTGACCTCTTCCAAT
GCAGGACTTTGGACATGAATGGCAAGTTTGAGACCAAGTCCTGGGTAGAA
AGGATCGTTATTATAGGCCTGCCAAAGGCTCCAACTACAATCACTATAGA
TGGGATCAGAGACATCAGTAAGTGGGCTAAATTTTCTATCTTTATTTAAT
TAGTTAATGGCTNTCTATCTTTAGTTGATGGCTGTGCTAATATCTGTAAG
AGGAAACTAGGAAACCTTTGCTGGAATAGGCTTACAACTGTCCAAGATGA
CCAACATGTATTTGACTGAGGAGTATTATCGTACACTGTTTTTCCTATGA
TAAAGGTGTAGTCCTTCGGATATCCTGAAAATTGCTTGTTGAAATAAACC
AAAGTGATTTGTGTAGAAATGATTCATACATATTTTACACAGACCAAGCT
GGCCATGGATACATTAGCCTGGGTGTCATGCTACTTAGTTTACCAGGGCT
CCCATACTTGCTCCCTCACAAAATAATTTGGAGGGGGAGCAAGTTTGGTA
ACCAGTCCTGATTATATCACACTTTGCACATCCGCCGGTGGGGAGGGGCA
GTTACAGCCTCGGACAGTGGAGTTTGCTACAAGTATGGGAGCCCCAGTAA
ACTGAATAAGACACCCAGCCTAGGATACATAAGACATAATATGTAACATG
TACCTGGTTTCCTCTGTGCAGTGATAGACAAGAAGAACCTGGAGTTCCGC
TACACTCCAGACACGCAGACTCTGGTTATCAGGAAACCAGCTGTCAACGT
GGCCCAGAACTGGAGCATCACCCTGCAATAACCTGCCATGCTGCTACATG
TACATGGGTGAGACAAGGGAGGGGGGTTAGGACCTTATGTATGTGGCAAT
AGATGATGGCAAGTCCATGGAGAGCTCAGTTCTTGTCAAGCTAGTGATAA
TGTACCGGTGGGATGAGATACCTTGTGTACTGAAAAGATAAACCTCTTGA
CTTAACACATGATGTAAGGGGTCTTTAAACTTGCTTGTTGTTCCTAGTTT
GATCAGTGGTTAGATTATATATACACTTGCTGTCTATAAGAGGTTGGTAC
CATAGCTACATGTAAATCTGATGATTCGATTAAGAAAAGTTTGAAACAGC
AAAAGATCAGGCCTTGTCCTGTAAGTTTCCATATTCAAGGCTACTCTTAC
CATACTTAAGGTGTATAAATGATGAGTATACATAGCAAACTTGAATGTAA
TGACAGAGGTGTTAGGTCCGTTGTTACTGCCCAATGATGTTGGGTTTTAA
GGATTATTCATTCCAGAACAAGCCTGTGCCAAGTTATTTGCATTCAAATG
TCAGTATTCAGCTGAATTAATTAGCATAAGCACGTCGACTGATGATGATG
ATGATTCAGCTGAACAAAGTCTTTTTATTGGATTGCAAACCTCATTTTTC
AGTTAGTTGAATTTTTGCCATATGATGAAGGACCATCACACCAGTTATGA
GACAGTGTTTTTTGTGTACTTTGTAAGGAATTGCTATCAAAGACTTCGTT
GATGTCCCAGGCGTTTCTAGAAAAAGTCAGCACGAAGAGATCTTTGTTGA
CTTAGCAAAAAAATTACTTAAAACTTCTTGGCACACAATGACATTGTAAC
TAGCTGATTATATGCACAAATTTGAAAAGCATTCATCTAATGAAAAGACT
ACAAATTGTCGTTGGAAAATAACTGTAAAGATGTATTAATTTTGCACATT
CTTGACAAATCAATTTATTAGTATAATCAATGAATTATGTCATGAAGATA
TAATGTTAGCTTATCAATGGGTGTACAAAGTCGTATATTGTTATTACTGG
TGAATGGTTTTGAAAATAGGTAGGAACAAGATAGGACTTACGTTTGTGTC
TCTCGATCTTCATTTATCAGGATCTGCCTTACTCTGCATTCACAGATGTG
TGTTACTCCATTTTATAAGGAGGGAATGATGTATAGTGTTAGGGCAGGTC
CTCTTTCATCAAAGTTAAGTTTTTTCACTTAGATATGAAAGCACAAAACT
CTGAATAGATAACATAACAGTATAATGTATGTATCATGTGTCATGGTATA
TCAACCAGAATGTAGCATTTCTCTATTCATTTGTGGCTTCCATGCAGCAA
TTCTCAATGCGCAAAGCATGCAGTATCTCTGAAACGATTAATGCTAGACT
TGGATAGATAATTGTCAACCTTTTTCCAATCAGCTTGTTATTATGATGTA
CCACTCATTTCACAGGATAGGGTGATAGTAAAGCTTTCCTGCTTTGCCTC
TTTTACAACATACATTGCATTTTACACAACGCTGTCAATACACAAAGTAC
TGTGTTAATACATTTAGTACAGTGCTTTTTGTGCAAGCAAAACGGTTGTA
CGGGCAGTCTTCCTGTGTTCATATCATTTTGCACTTTGACCTTTGTTATC
AGCAATGATGTGTTACTTCTCTCTTGCGTATAAAAGGCAAATACATTTAT
CTCTGTTGTCGATAGTTGGAATTCCTTTGTCGCACTGAGTCTTTATTGCA
TTGTAGCGGCTAGAAATATCATTAAGGTTATGATGAGTGCAAAATTTTAC
GGAGGAAATGCATCTTTTCTATATGACAATAGGAAACATTTAGTAGGTGG
TACATTGTAATTTAGTGGAATAAAAGTGACAAATTTGTGTCCCACTAGAG
TGGTGCTAGTTATACGTCATATCAGCAGTTGATAGAACCACTAACTGGTG
TGTTTGCCCTGATGGTAAAAAGTAACAAAAAGTCCCTCAGCACATTGAAT
GCTTCCCACCACTGATAAGAACAAACTAACACACCATTTGCAAAGGTGTA
GCTAAAGATGTGTTTCTTACACTGTGTAGAGAACCTAAAAACACATATTT
TATCAATGAATTCAAATTACAGGGCAGCTGGACATGTGTTTTTACAACTG
GGTCAAATGTTTGATATGAAAAACAGTCCAGTGCCCTTTTGTTTGTTGAG
TAAACAAACTGGACAATAACTATTGCTTACTGACGTACAGTAAGTCACAA
CGTCAACATGTAGTTGAAGAGCCACATGTTTGCAAACATGTTTGAGTTCA
AATCTCTAACACCAACCTAGCACAGTGTCTTATGGTAATGGTGTGGTGCG
TATTTGGCAATGGGACTAACGTTACATGTATGATTCGTGTTTATATCAAA
CTAAGCTTTATAAGATCAGTTTCTCATTGCCTGCATACACTGCAGATCAT
GGCTCTGCTTTTCTTAGTGATTGCTATAATGAGGAGGTACTGTGGACATA
GTCCAATGTAACCAAGCTTGTACATTGGTTCATTTAGGAATGTCCAAGAA
AGCTGATTCAAAAGGATAGTGTTTTTGTAGCTTTGAGGCATATATTTGGA
CAACTGTTCTGGATGTTATCCAGGCTAAAAGTTGGCAATCTTCATATAGA
GAGTGACGGATGAAGTGTAAAGCAGAAGTTCTTTGTTCAGCAGTGTACGA
AGCTGGTTTCACAAAAGATTGGAGTCAATGTTATGTGAAGCATGCATCAG
TTCCTGTTCATTAGTTCTGTTTAGAGCTTTTGTGACTAGAGAAGTCAAAA
CATAGTTCTGCATCAGTAAAAG Coding sequence (CDS) from alignment at Sc0000047:1755453..1759624+ >transcript:BL87314_cuf3 ID=transcript:BL87314_cuf3|Name=transcript:BL87314_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=1368bp|location=Sequence derived from alignment at Sc0000047:1755453..1759624+ (Branchiostoma lanceolatum)
AGCAGGGGAAGAGCAACTGGTGAAATATTTGTGGATGACGGCCACAGCTT
CAAGTACCGGGACAACAACAGGTTCCTGCACAAGAACTATCTTTTTGAAA
ACAACAAACTTATATCAAGGACTTTGGACATGAATGGCAAGTTTGAGACC
AAGTCCTGGGTAGAAAGGATCGTTATTATAGGCCTGCCAAAGGCTCCAAC
TACAATCACTATAGATGGGATCAGAGACATCATGATAGACAAGAAGAACC
TGGAGTTCCGCTACACTCCAGACACGCAGACTCTGGTTATCAGGAAACCA
GCTGTCAACGTGGCCCAGAACTGGAGCATCACCCTGCAATAAAGCAGGGG
AAGAGCAACTGGTGAAATATTTGTGGATGACGGCCACAGCTTCAAGTACC
GGGACAACAACAGGTTCCTGCACAAGAACTATCTTTTTGAAAACAACAAA
CTTATATCAAGGACTTTGGACATGAATGGCAAGTTTGAGACCAAGTCCTG
GGTAGAAAGGATCGTTATTATAGGCCTGCCAAAGGCTCCAACTACAATCA
CTATAGATGGGATCAGAGACATCATGATAGACAAGAAGAACCTGGAGTTC
CGCTACACTCCAGACACGCAGACTCTGGTTATCAGGAAACCAGCTGTCAA
CGTGGCCCAGAACTGGAGCATCACCCTGCAATAAAGCAGGGGAAGAGCAA
CTGGTGAAATATTTGTGGATGACGGCCACAGCTTCAAGTACCGGGACAAC
AACAGGTTCCTGCACAAGAACTATCTTTTTGAAAACAACAAACTTATATC
AAGGACTTTGGACATGAATGGCAAGTTTGAGACCAAGTCCTGGGTAGAAA
GGATCGTTATTATAGGCCTGCCAAAGGCTCCAACTACAATCACTATAGAT
GGGATCAGAGACATCATGATAGACAAGAAGAACCTGGAGTTCCGCTACAC
TCCAGACACGCAGACTCTGGTTATCAGGAAACCAGCTGTCAACGTGGCCC
AGAACTGGAGCATCACCCTGCAATAAAGCAGGGGAAGAGCAACTGGTGAA
ATATTTGTGGATGACGGCCACAGCTTCAAGTACCGGGACAACAACAGGTT
CCTGCACAAGAACTATCTTTTTGAAAACAACAAACTTATATCAAGGACTT
TGGACATGAATGGCAAGTTTGAGACCAAGTCCTGGGTAGAAAGGATCGTT
ATTATAGGCCTGCCAAAGGCTCCAACTACAATCACTATAGATGGGATCAG
AGACATCATGATAGACAAGAAGAACCTGGAGTTCCGCTACACTCCAGACA
CGCAGACTCTGGTTATCAGGAAACCAGCTGTCAACGTGGCCCAGAACTGG
AGCATCACCCTGCAATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000047 | genome | Sc0000047:1755453..1759624 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL87314_cuf3 |
| Biotype | protein_coding |
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