transcript:BL86525_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL86525_cuf0
Unique Nametranscript:BL86525_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL86525_cuf0

>transcript:BL86525_cuf0-protein ID=transcript:BL86525_cuf0-protein|Name=transcript:BL86525_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=141bp
AFKFTDEPLPYVYLHCDVMMCLENNPDSRCIQGCLGARRRRRAADDGVQE
RATLVQGPIVLVPDESRDGVSDSWVPAVAGAPAAAAVIIIAIATAALLYR
AKRKNRITDVEGHDNMAFAQAATGPAETASSAPYRNGESSC
Run BLAST on NCBI

mRNA from alignment at Sc0000263:101770..105383+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL86525_cuf0 ID=transcript:BL86525_cuf0|Name=transcript:BL86525_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3614bp|location=Sequence derived from alignment at Sc0000263:101770..105383+ (Branchiostoma lanceolatum)
TGCCTTCAAGTTCACCGACGAACCACTGGTAAATATGTTTGTTGGATTCA
GTTTTAGTCCCGCTCGGCCGAACCGATTGACCACATGCTGGTGTGCTCAC
ACATTGTCATAGAAAAGTATGCCAGATATACGTCCCAGCCCACTCTAGCC
AACAAAAGTTGATCTAAACGATGAAAAGTTGCCGGAGAACTTGGCAATCC
AAATGGAAGCACTGTCGACAGGTACGATCCGTCGGGAGTGACGAAGGCTG
TTTTGCACCAGTCAGACGGATGTATTTGGCAGTGCGCTCTCTAATACATA
TCTGGAATTGAAAAGTAGGACGCTCCAGCTAGTGCGTCGCCAGCACGTGG
TGAGGGATGAGTGAAAGAGTTTAGTTTTCGATATGCGAATTGAGGGTGCC
ATCCTCCTTGGAAACACCAGGCAAAAAAAACAAGGACTTGAGCTGGGTCA
TTTTCGAGCATGTCGGTGGTTGTTCGCGGGGGCCTGTGCCTTCACTGTGA
CGTCATGATGTGTTTGTTTCCCTAGCCGTACGTGTACCTGAACTGTGACG
TCATGATGTGTTTTTCCCCAGCCATACATGTACCTGCCATGTGACGTCAT
GATGTGTTTGTTTTCCCCGCCGTACGCGCACCTGCACTGTGATGTCATGA
TGTGTCTCTTTTCCCAGCCGTAGGCGCACCTGCCCTGTGACGTCATGATG
TGTTTGTTTTCTCCAGCCGCACGTGTACCTGCACTGTGACGTCATGATGT
GTTTGTTTTCCCCAGCCGTACGTGTACTTGCACTGTGACGTCATGATGTG
TCTGGAGAACAACCCTGATTCTCGATGCATCCAGGGCTGCCTCGGCGCGC
GCAGGCGCAGACGGGCCGCAGACGACGGCGTGCAGGAACGCGCTACCCTG
GTGCAGGGGCCAATCGTTCTGGTCCCGGATGAAAGTCGAGACGGTAAGGA
AACATCTCATATATTGCTTCTCTAACTCCGGAGCTCCCCGTTGGAACCAG
CGGGATTCATGATCTAGGATGTCTGTGGATTCGAGATTGAATGAGTGTCC
CTGGTTGTGTTTTAGATCGTGGAAAATGGCAGAGGAGTAGTGGTTTAGCG
CCCTTTCTGCAATGTTTGTTGTACCTTTCTTTTAGTGGTCGACTAGTCTC
CCCAATTCACATGTTATTGCAGTTCGGTTCCTCACATTTCAGTTTGTACA
ATCCCGCCCTCAACAGGAAAGAACGCGTTGAACTCTCAGGCACCTGGGAT
AGTGCACTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNTTGTACCTT
TCTTTTAGTGGTCGACTAGTCTCCCCAATTCACATGTTATTGCAGTTCGG
TTCCTCACATTTCAGTTTGTACAATCCCGCCCTCAACAGGAAAGAACGCG
TTGAACTCTCAGGCACCTGGGATAGTGCACTGCCCCCCCCCCCCATCCCC
ACCCCCGGACGAACAACTTTTAGTTACTATACTCAAACAACAGTAGCTAA
TTGAAACATTAGCATAAACCTTGTCTTGAATTAATCTTCTTTTGAAGACT
ATGATCTTCTTTTGAAGACTATGTCAAGAAATCCTAAATTGTCTTAACCT
CATTAACATAACTATTCAGTTCTGGTATAAAATCTGGTTTTCCAGTCCTA
TCGTTAGTCACTGACGAAAGACAGCGGATATGCTGTCTGAAACGTCTGAC
TGTTTCAAAATTGTATCCAGTTCCTTGAGTAATTATTCTTGGCATAACCA
CATGCTGTTCGTTTCCGCGCCGCAGGTGTCTCGGACAGCTGGGTCCCGGC
AGTGGCAGGTGCGCCAGCTGCAGCAGCTGTCATCATCATCGCCATAGCAA
CCGCCGCGCTCCTGTATCGCGCCAAACGCAAGAACCGGATCACAGATGTG
GAAGGTCAGAGTTAATCTGTTGGAATTACTACGGCAATGGGACTAGGACT
GCAGATGTAGAAATTCATTTAGAGTCATTCTTTTGAAGAAGCAATCCAGA
CATAGTCATTATGTCGTTTTGTTTTACAGTTTTTGATTGGAGACATGTTA
TTGTTTAGATTTGCTTGTTTTTAACCACCAAAAAAGAAGCAACGAAGCCA
TAGACCATGCAGCAGTCGTTTTTTTGTTTGTTGTGCAGCGTTTTGTTTTA
TCCATGTTAATTATTTCTGTTTGCTTCAGGGCACGACAACATGGCCTTTG
CTCAGGCAGCAACCGGACCGGCGGAAACTGCAAGCAGCGCCCCCTATCGG
AATGGCGAAAGCAGCTGCTGAGCCGTTTAGTGTGTTTAAGGACATCTATA
ATGTACTTGGCGTGCTTTTTTGAATAAAAAGACAAGAATGTAAGAATGTA
GAAGGATCCGTACAGAAATGAGTAAGGTTGGCATATGTATGTGTGTTGGA
TGATGCTTGATATACGATGAAAATGCTAAAGCATGTTTGTTTGCTGTTTG
TTTGTTTGTTTGTTAATTCATAGAAGAGCTTAAATCGGCCTGCTGGCTGC
TTTTTATTGAGGTCATGAGGGAAGGATAAGAGGCAAAATGTACCAAAGAT
TTGTATTGTTGAAGTCCGGTGAGTTGTCAAAGGTAATGCAACGATAAATG
TTGTCAACATTGCTGATCCTAACTTCGACACTGAGTGACAGAACTTTGAA
TTCTGTAGTGAATTGTTTGATTTTTAATGTTCATTTAACTTTGGGTATCG
TTTGTGTGTCTGATTTTTATACTAAGGAGTTATCATGAAAAGTATTTGAA
CTCTTTCAACCTCTTTAGTGTTATAAGTTAACTTTAAGATTTGTTTGAAA
ATGACTTCTGCCAACACAGACGAATTTGCATGCGACCCGAAGAGGCATGT
TGTCGGAAAAAAATCTTTAACTTGATTGTATCTCGCATTCTAAAATGCAC
CAAGATGTTTGTGTAAGAAGTGCTGTTTCACTTTGTTTGTCATTTGCAGT
GTAGTCCAGGGCATTCACTTTAAACATCTCAGCTGCATTAAAGAACAATT
TCAGGAACGTTTTGAAAACCCTCTCTTCCACTTTTTGGTCTGAAATTACA
CTGTTATCAGGCAGGTAACAAGTCAGATCTTCTACAAGGTTTTACATGCG
ATGCGGTTATTTTAGTGGATATACATGTTGGATTTCTTAGCGCTGATGAA
TTAACGTTTTAAAATGATGGATCCATCCAAATTGAATTGTTAATTACATT
AGACCAGCCATTGTTAGGACAGTTTAGATCACCTGCCAGCACTACCTGGT
GTTATTCCTTTGAAACACCGCTAAGACTGTAATTCACAATAAGTACGATT
TTTGAATGATTGTCAGGTTGAATGTCATACTTTGCTTAACGAAGCCCGGT
CTTGAGTGTTTTGTGGAAACAGGTTAGCAGACGAAGATTCGTCAACACCG
ACATATCCATCGCCATGGAGATTGCTTTGCAAACTTGGCGGACTGAACGT
TGGACACGAGTCATACACCGCGACTCGCTAAAAAAGCACGTTCTTGCGAG
TTTGCACGTTTGAGAAGCAGAAAGGCAAACATTAGTTTCTAAAAGGAACG
TGTTTTTTGGGCGAGTCGCGGCGCCACGTTCGGAATCCCCTGTAGTGTTT
ACTGTGACGTCACG

Coding sequence (CDS) from alignment at Sc0000263:101770..105383+

>transcript:BL86525_cuf0 ID=transcript:BL86525_cuf0|Name=transcript:BL86525_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1704bp|location=Sequence derived from alignment at Sc0000263:101770..105383+ (Branchiostoma lanceolatum)
GCCTTCAAGTTCACCGACGAACCACTGCCGTACGTGTACTTGCACTGTGA
CGTCATGATGTGTCTGGAGAACAACCCTGATTCTCGATGCATCCAGGGCT
GCCTCGGCGCGCGCAGGCGCAGACGGGCCGCAGACGACGGCGTGCAGGAA
CGCGCTACCCTGGTGCAGGGGCCAATCGTTCTGGTCCCGGATGAAAGTCG
AGACGGTGTCTCGGACAGCTGGGTCCCGGCAGTGGCAGGTGCGCCAGCTG
CAGCAGCTGTCATCATCATCGCCATAGCAACCGCCGCGCTCCTGTATCGC
GCCAAACGCAAGAACCGGATCACAGATGTGGAAGGGCACGACAACATGGC
CTTTGCTCAGGCAGCAACCGGACCGGCGGAAACTGCAAGCAGCGCCCCCT
ATCGGAATGGCGAAAGCAGCTGCTGAGCCTTCAAGTTCACCGACGAACCA
CTGCCGTACGTGTACTTGCACTGTGACGTCATGATGTGTCTGGAGAACAA
CCCTGATTCTCGATGCATCCAGGGCTGCCTCGGCGCGCGCAGGCGCAGAC
GGGCCGCAGACGACGGCGTGCAGGAACGCGCTACCCTGGTGCAGGGGCCA
ATCGTTCTGGTCCCGGATGAAAGTCGAGACGGTGTCTCGGACAGCTGGGT
CCCGGCAGTGGCAGGTGCGCCAGCTGCAGCAGCTGTCATCATCATCGCCA
TAGCAACCGCCGCGCTCCTGTATCGCGCCAAACGCAAGAACCGGATCACA
GATGTGGAAGGGCACGACAACATGGCCTTTGCTCAGGCAGCAACCGGACC
GGCGGAAACTGCAAGCAGCGCCCCCTATCGGAATGGCGAAAGCAGCTGCT
GAGCCTTCAAGTTCACCGACGAACCACTGCCGTACGTGTACTTGCACTGT
GACGTCATGATGTGTCTGGAGAACAACCCTGATTCTCGATGCATCCAGGG
CTGCCTCGGCGCGCGCAGGCGCAGACGGGCCGCAGACGACGGCGTGCAGG
AACGCGCTACCCTGGTGCAGGGGCCAATCGTTCTGGTCCCGGATGAAAGT
CGAGACGGTGTCTCGGACAGCTGGGTCCCGGCAGTGGCAGGTGCGCCAGC
TGCAGCAGCTGTCATCATCATCGCCATAGCAACCGCCGCGCTCCTGTATC
GCGCCAAACGCAAGAACCGGATCACAGATGTGGAAGGGCACGACAACATG
GCCTTTGCTCAGGCAGCAACCGGACCGGCGGAAACTGCAAGCAGCGCCCC
CTATCGGAATGGCGAAAGCAGCTGCTGAGCCTTCAAGTTCACCGACGAAC
CACTGCCGTACGTGTACTTGCACTGTGACGTCATGATGTGTCTGGAGAAC
AACCCTGATTCTCGATGCATCCAGGGCTGCCTCGGCGCGCGCAGGCGCAG
ACGGGCCGCAGACGACGGCGTGCAGGAACGCGCTACCCTGGTGCAGGGGC
CAATCGTTCTGGTCCCGGATGAAAGTCGAGACGGTGTCTCGGACAGCTGG
GTCCCGGCAGTGGCAGGTGCGCCAGCTGCAGCAGCTGTCATCATCATCGC
CATAGCAACCGCCGCGCTCCTGTATCGCGCCAAACGCAAGAACCGGATCA
CAGATGTGGAAGGGCACGACAACATGGCCTTTGCTCAGGCAGCAACCGGA
CCGGCGGAAACTGCAAGCAGCGCCCCCTATCGGAATGGCGAAAGCAGCTG
CTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL86525gene:BL86525Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL86525_cuf0transcript:BL86525_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL86525_cuf0-E1BL86525_cuf0-E1-1564476830-414054Branchiostoma lanceolatumexon
BL86525_cuf0-E2BL86525_cuf0-E2-1564476830-414056Branchiostoma lanceolatumexon
BL86525_cuf0-E3BL86525_cuf0-E3-1564476830-414058Branchiostoma lanceolatumexon
BL86525_cuf0-E4BL86525_cuf0-E4-1564476830-414061Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000263genomeSc0000263:101770..105383 +
Properties
Property NameValue
Transcript idBL86525_cuf0
Biotypeprotein_coding