transcript:BL86330_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL86330_cuf0
Unique Nametranscript:BL86330_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL86330_cuf0

>transcript:BL86330_cuf0-protein ID=transcript:BL86330_cuf0-protein|Name=transcript:BL86330_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=182bp
QICFNRSVPVPPEIILGGQQVPWVEQAKGLGFILDRYLTFNNQVTSMVTK
ASRRLHYLRLLTKQGTSVVDLVQVYVTLIRPVLEYGHVLLVGCSKEQERQ
IERVQRRALRIVSLGGRREVPPLPTLKERREVAAVKLLRDMLDEGHPLHD
LVPPARSTVTGRTLRNGTALTVPAARTQRLRR
Run BLAST on NCBI

mRNA from alignment at Sc0000352:118079..118625-

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL86330_cuf0 ID=transcript:BL86330_cuf0|Name=transcript:BL86330_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=547bp|location=Sequence derived from alignment at Sc0000352:118079..118625- (Branchiostoma lanceolatum)
CAAATATGTTTTAACAGATCAGTTCCTGTCCCACCAGAGATTATCTTAGG
GGGACAACAGGTGCCATGGGTTGAACAAGCCAAGGGTTTGGGATTTATAC
TGGATAGGTACTTGACGTTTAATAACCAAGTGACATCCATGGTCACGAAG
GCCTCTCGTAGGCTTCATTATCTTAGGCTCCTTACTAAACAGGGCACTAG
TGTCGTGGATTTGGTCCAGGTGTACGTCACACTTATCAGACCTGTGCTCG
AATATGGGCACGTACTACTAGTAGGGTGTAGTAAGGAGCAGGAGAGACAA
ATCGAAAGAGTACAACGGAGAGCACTCCGTATCGTCTCACTGGGGGGAAG
ACGAGAGGTGCCTCCTCTGCCGACGCTGAAGGAACGGCGAGAGGTTGCGG
CAGTGAAGCTACTGAGGGACATGCTGGACGAGGGTCACCCCCTCCATGAC
CTGGTGCCGCCGGCCAGGTCTACGGTCACTGGGAGGACTCTTAGAAACGG
CACTGCACTTACTGTGCCAGCTGCCAGGACACAGAGACTGAGAAGGT

Coding sequence (CDS) from alignment at Sc0000352:118079..118625-

>transcript:BL86330_cuf0 ID=transcript:BL86330_cuf0|Name=transcript:BL86330_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=546bp|location=Sequence derived from alignment at Sc0000352:118079..118625- (Branchiostoma lanceolatum)
CAAATATGTTTTAACAGATCAGTTCCTGTCCCACCAGAGATTATCTTAGG
GGGACAACAGGTGCCATGGGTTGAACAAGCCAAGGGTTTGGGATTTATAC
TGGATAGGTACTTGACGTTTAATAACCAAGTGACATCCATGGTCACGAAG
GCCTCTCGTAGGCTTCATTATCTTAGGCTCCTTACTAAACAGGGCACTAG
TGTCGTGGATTTGGTCCAGGTGTACGTCACACTTATCAGACCTGTGCTCG
AATATGGGCACGTACTACTAGTAGGGTGTAGTAAGGAGCAGGAGAGACAA
ATCGAAAGAGTACAACGGAGAGCACTCCGTATCGTCTCACTGGGGGGAAG
ACGAGAGGTGCCTCCTCTGCCGACGCTGAAGGAACGGCGAGAGGTTGCGG
CAGTGAAGCTACTGAGGGACATGCTGGACGAGGGTCACCCCCTCCATGAC
CTGGTGCCGCCGGCCAGGTCTACGGTCACTGGGAGGACTCTTAGAAACGG
CACTGCACTTACTGTGCCAGCTGCCAGGACACAGAGACTGAGAAGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL86330gene:BL86330Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL86330_cuf0-E1BL86330_cuf0-E1-1564476830-445426Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL86330_cuf0transcript:BL86330_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000352genomeSc0000352:118079..118625 -
Properties
Property NameValue
Transcript idBL86330_cuf0
Biotypeprotein_coding