transcript:BL85955_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL85955_cuf0
Unique Nametranscript:BL85955_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL85955_cuf0

>transcript:BL85955_cuf0-protein ID=transcript:BL85955_cuf0-protein|Name=transcript:BL85955_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=358bp
RGHNRTAITTASTDRMFKAEHNQLEGQISSSQLIIKKRIEVSSAFILGTR
RKGTFVNMRKRRLCGLILLQVICTIGLITYLHLVDTSRERETLQNVLRDD
NPYGNVRFGGKWSPSEENRCGCSEKVAILVPYRDREEHLDIFLRHMHPFL
QRHRLDYVIYVIEQHGEERNFCKGLLYNVGFTEALKDDPTYDCFIFHDVD
LLPEDNRNLYTCSKSPCHLSVAIDKFDYNLPYNDLFGGVSAMKTSHYKLV
NGYSNLFCGWGGEDDDIARRLKRHMLKISRPDKNVARYKMLSHNQTEKNP
QRFKLLGHWLSRAMKDGLKSLKTTGYNVTSTSQRELYTHILVNITKRGVI
DYHHKKAI
Run BLAST on NCBI

mRNA from alignment at Sc0000091:454178..457041-

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL85955_cuf0 ID=transcript:BL85955_cuf0|Name=transcript:BL85955_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2864bp|location=Sequence derived from alignment at Sc0000091:454178..457041- (Branchiostoma lanceolatum)
CGAGGACACAACCGTACAGCAATCACCACAGGTAAGAAACGACAGTTTAG
TCCTGACGTTTTAATGTCAGATTTTATACTTTTTTGGGAAAATGACGTGC
TATTCATCTTGTAAGTGGTCACGAATCAAGGAAACGGATATGAGGAACTG
TTAGCTAGCTGGTGATTATGGTAAGACACTCAAGGGTTTCGTTTCACACT
GTGGTGGTCACTTTGGGCATTAATGCATTACATCTTCAATCCTAATGTGT
TTTGAACGTGTAACTTAAATTTTGTCGTTTCGGTGTTACCCTTCTGACAT
GTGACATGTGAAAACCTTAGTGTCAGTGCGGTCACTGTTATATCAAACAT
TTTTCAAACTAGTAAGCGTTTCAGAGCTTGAGTCACGATGGAAAATTGAG
ATGATAAAGGAAGGCTGGGCGTTGACTACTACTAAAAAATACTAGCATTT
GTGGGATCTAAAAAAAAGGACGAAAATATATACGGTATCGAATTGCATAT
ACCATTAACATACGTGGCACGTGACATTTTCTGGTGGCTTGTCCCTATGG
CTTGCAGGATTTTACTCTGTTGTGTCGCTGAATGCCAACCTATTCCATTG
CTTTGCATAGAGAAGAAACGTGAAAATGAGACTTATTAATGTGTGCCTCA
CCCAAAGTGGAAGATAGCTGGTACCTCACGTTATGTGGTATCTCTACATT
ACATGCTACTTGGACATGTGTTGCGGTGTGTTAAGTGGCCATTGCGCATT
GTCCTGAATGTTTTGAATGTAGTAGGGTAAGCGTACATGTAACTTAATGG
TCGATAATACTTATCTCGTTCCAACAGCAAGCACCGATCGTATGTTCAAG
GCTGAACACAATCAACTAGAAGGACAAATAAGCTCCAGTCAGTTAATCAT
AAAGAAACGCATCGAGGTGTCATCAGCATTTATCCTGGGTACGAGACGAA
AAGGCACTTTTGTAAACATGAGAAAAAGGAGATTGTGCGGGCTTATTCTA
CTACAAGTTATCTGCACCATCGGATTGATAACGTACCTACATCTGGTGGA
TACGTCACGTGAAAGAGAAACGTTACAGAACGTACTTAGGGATGATAATC
CTTATGGTAATGTCAGGTTCGGTGGGAAATGGAGTCCCTCGGAGGAAAAT
CGGTGTGGCTGCTCGGAGAAAGTCGCCATCTTGGTGCCATACAGAGACAG
AGAGGAACACTTGGATATATTCCTCCGTCACATGCATCCGTTTCTCCAAC
GCCACCGGCTTGATTACGTAATCTACGTCATAGAACAACATGGCGAGGAA
CGCAACTTCTGCAAGGGCCTGCTTTACAACGTGGGCTTCACAGAAGCGTT
AAAAGACGACCCTACTTACGACTGCTTCATTTTCCACGATGTCGACCTCC
TTCCCGAAGACAACAGAAACCTGTATACCTGTAGTAAATCTCCCTGTCAC
TTGTCGGTGGCTATCGACAAATTCGATTACAACTTGCCCTACAATGATCT
GTTTGGCGGAGTTTCAGCCATGAAAACGTCTCACTACAAACTGGTGAACG
GTTATTCCAACTTGTTCTGTGGATGGGGAGGGGAGGATGATGACATAGCT
CGGCGACTGAAAAGACACATGTTGAAGATATCTCGTCCGGACAAAAATGT
CGCCAGATACAAGATGCTGTCTCACAACCAAACGGAAAAGAATCCGCAAA
GGTTCAAACTTTTAGGACATTGGTTATCCAGGGCTATGAAGGACGGACTG
AAAAGTTTAAAAACAACTGGGTATAATGTAACTTCAACATCACAAAGGGA
ACTATACACACACATCTTAGTAAACATTACAAAGAGAGGAGTCATAGATT
ATCATCACAAGAAGGCAATTTAGCAAACAGTAATTCCAGGTAGTTTTGTT
ACAACTTGCCTGCCCCAAATTGATTTTGTGGTTCACGGATTCACTAACTT
AAAATTCATTTGCTAATTTGAAATCTATAATCTGTGATGACAGGCATAGA
CTACTATAACTCTTGAATTTCATCGAATCGTTCTTTTGAACTTGCCTATT
TTGCTGATCTTACGAAAAATACATGTCAATGTTATGACAACGTACGTTCA
CGTCAGTTTTGTAACCGGATATATATTGCGTAATTGTAGCTCTCGCCAGA
TGGCGCTACTACACTAGTCTAGAATAAGCTTATGTTCAGAGCATGACAGA
TTGCCGATTTTCTTGTTCATTCTTTGACTTCTGGCTCAAAGTTTGAGTTT
TCGAAAGCGTTTAAATTTCAGTATGCATTTGTAAGGAGAAAACTGTTTTG
TCTTTCATAATTCATAAATTGTCTTCAAGTAGGCCAAACTTCGGTTCATT
CGAAAGTTATCTTTGTACATATTTGTAAATTGTAAACAGTTTTCAATTAT
TATGTTTTGTTTGGACGTTACGGAAGTTAATTTTCTTTAGAAATATTCAG
CTGCGTCATTCTGGTTGTCTCGGTCATTCCGTCTCAAATTCTATACAAAA
GAAAAAGTCCTTAGCCATGCTTTGAAAAACAGTTACTCAAGAACCATGAT
TCTTTTTTAGTTTTCACACGCAGTAAAAATTGACGAAAGACGTTACATAT
ACATGTAGTTTTACAGTTGTACTATATCCACACAGTTCCATATATCTAAT
ATTGCTTTCGGTTTGTATCTTCGTTTGTCTTGGTGTGTGTCCGTAGTTAA
TTTGAATATTGTAGAGTGACAGGATGTGAGGTGGAAGATGGTGTATCCGG
AGACTGGCAGGATGGGAAGGTTGGCCTGGCCCAGGTCCAAAGTTGGTCCC
GCAGGCTGCCACGAAAATGCATAAACATATTTAGCGAGAAATTAACTATG
ATGAATAAAACGAG

Coding sequence (CDS) from alignment at Sc0000091:454178..457041-

>transcript:BL85955_cuf0 ID=transcript:BL85955_cuf0|Name=transcript:BL85955_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2154bp|location=Sequence derived from alignment at Sc0000091:454178..457041- (Branchiostoma lanceolatum)
CGAGGACACAACCGTACAGCAATCACCACAGCAAGCACCGATCGTATGTT
CAAGGCTGAACACAATCAACTAGAAGGACAAATAAGCTCCAGTCAGTTAA
TCATAAAGAAACGCATCGAGGTGTCATCAGCATTTATCCTGGGTACGAGA
CGAAAAGGCACTTTTGTAAACATGAGAAAAAGGAGATTGTGCGGGCTTAT
TCTACTACAAGTTATCTGCACCATCGGATTGATAACGTACCTACATCTGG
TGGATACGTCACGTGAAAGAGAAACGTTACAGAACGTACTTAGGGATGAT
AATCCTTATGGTAATGTCAGGTTCGGTGGGAAATGGAGTCCCTCGGAGGA
AAATCGGTGTGGCTGCTCGGAGAAAGTCGCCATCTTGGTGCCATACAGAG
ACAGAGAGGAACACTTGGATATATTCCTCCGTCACATGCATCCGTTTCTC
CAACGCCACCGGCTTGATTACGTAATCTACGTCATAGAACAACATGGCGA
GGAACGCAACTTCTGCAAGGGCCTGCTTTACAACGTGGGCTTCACAGAAG
CGTTAAAAGACGACCCTACTTACGACTGCTTCATTTTCCACGATGTCGAC
CTCCTTCCCGAAGACAACAGAAACCTGTATACCTGTAGTAAATCTCCCTG
TCACTTGTCGGTGGCTATCGACAAATTCGATTACAACTTGCCCTACAATG
ATCTGTTTGGCGGAGTTTCAGCCATGAAAACGTCTCACTACAAACTGGTG
AACGGTTATTCCAACTTGTTCTGTGGATGGGGAGGGGAGGATGATGACAT
AGCTCGGCGACTGAAAAGACACATGTTGAAGATATCTCGTCCGGACAAAA
ATGTCGCCAGATACAAGATGCTGTCTCACAACCAAACGGAAAAGAATCCG
CAAAGGTTCAAACTTTTAGGACATTGGTTATCCAGGGCTATGAAGGACGG
ACTGAAAAGTTTAAAAACAACTGGGTATAATGTAACTTCAACATCACAAA
GGGAACTATACACACACATCTTAGTAAACATTACAAAGAGAGGAGTCATA
GATTATCATCACAAGAAGGCAATTTAGCGAGGACACAACCGTACAGCAAT
CACCACAGCAAGCACCGATCGTATGTTCAAGGCTGAACACAATCAACTAG
AAGGACAAATAAGCTCCAGTCAGTTAATCATAAAGAAACGCATCGAGGTG
TCATCAGCATTTATCCTGGGTACGAGACGAAAAGGCACTTTTGTAAACAT
GAGAAAAAGGAGATTGTGCGGGCTTATTCTACTACAAGTTATCTGCACCA
TCGGATTGATAACGTACCTACATCTGGTGGATACGTCACGTGAAAGAGAA
ACGTTACAGAACGTACTTAGGGATGATAATCCTTATGGTAATGTCAGGTT
CGGTGGGAAATGGAGTCCCTCGGAGGAAAATCGGTGTGGCTGCTCGGAGA
AAGTCGCCATCTTGGTGCCATACAGAGACAGAGAGGAACACTTGGATATA
TTCCTCCGTCACATGCATCCGTTTCTCCAACGCCACCGGCTTGATTACGT
AATCTACGTCATAGAACAACATGGCGAGGAACGCAACTTCTGCAAGGGCC
TGCTTTACAACGTGGGCTTCACAGAAGCGTTAAAAGACGACCCTACTTAC
GACTGCTTCATTTTCCACGATGTCGACCTCCTTCCCGAAGACAACAGAAA
CCTGTATACCTGTAGTAAATCTCCCTGTCACTTGTCGGTGGCTATCGACA
AATTCGATTACAACTTGCCCTACAATGATCTGTTTGGCGGAGTTTCAGCC
ATGAAAACGTCTCACTACAAACTGGTGAACGGTTATTCCAACTTGTTCTG
TGGATGGGGAGGGGAGGATGATGACATAGCTCGGCGACTGAAAAGACACA
TGTTGAAGATATCTCGTCCGGACAAAAATGTCGCCAGATACAAGATGCTG
TCTCACAACCAAACGGAAAAGAATCCGCAAAGGTTCAAACTTTTAGGACA
TTGGTTATCCAGGGCTATGAAGGACGGACTGAAAAGTTTAAAAACAACTG
GGTATAATGTAACTTCAACATCACAAAGGGAACTATACACACACATCTTA
GTAAACATTACAAAGAGAGGAGTCATAGATTATCATCACAAGAAGGCAAT
TTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL85955gene:BL85955Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL85955_cuf0-E1BL85955_cuf0-E1-1564476830-290631Branchiostoma lanceolatumexon
BL85955_cuf0-E2BL85955_cuf0-E2-1564476830-290629Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL85955_cuf0transcript:BL85955_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000091genomeSc0000091:454178..457041 -
Properties
Property NameValue
Transcript idBL85955_cuf0
Biotypeprotein_coding