transcript:BL85853_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL85853_cuf0
Unique Nametranscript:BL85853_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL85853_cuf0

>transcript:BL85853_cuf0-protein ID=transcript:BL85853_cuf0-protein|Name=transcript:BL85853_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=198bp
MKDPTPSPVMLLNGKAIQYTEDACILGVWISADMKWGKHVTTIIKKASSR
LFWLKKLKRSGVCTEDLCEIYLLYVRPVIEYAVPVWHAGLTTLQSHQLER
IQKRALRIILGNNYTSYADALSTFNLCTLKARRESLCLKFAKSLMNSPTF
RPWLPPTRNKVHNMDLKGGFQLSIPFIRSDRYRNSAIPYLSKLLNSVL
Run BLAST on NCBI

mRNA from alignment at Sc0000005:6795701..6796720+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL85853_cuf0 ID=transcript:BL85853_cuf0|Name=transcript:BL85853_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1020bp|location=Sequence derived from alignment at Sc0000005:6795701..6796720+ (Branchiostoma lanceolatum)
AACGTTTCGACCCTGGCTACCCCCCACCCGCAATAAAGTTCACAATATGG
ACTTAAAAGGGGGTTTCCAGCTTAGCATACCCTTTATAAGATCTGACAGG
TACAGGAACAGTGCCATTCCGTACTTGTCAAAACTCCTGAACAGCGTATT
GTAACTTATACCTATTGTGTAATCACCCTACTACCGTTTCTACATATCCT
TGTTGTTCAGTTTTGGTTNCTTTCATGAAGGATCCTACCCCTTCCCCTGT
AATGTTACTGAATGGCAAAGCCATTCAGTACACTGAGGATGCCTGTATTT
TGGGTGTTTGGATTTCTGCCGACATGAAATGGGGAAAACATGTCACAACA
ATCATAAAAAAAGCAAGCTCGCGCCTTTTCTGGCTTAAAAAGCTAAAACG
CTCTGGTGTCTGCACTGAAGATCTTTGCGAAATTTATTTACTATATGTCC
GACCAGTCATAGAATATGCAGTCCCAGTATGGCACGCAGGTCTAACCACT
CTACAATCCCACCAACTTGAACGCATTCAAAAACGTGCCCTCAGAATCAT
ACTTGGCAATAATTATACTTCCTATGCTGACGCACTTTCAACTTTTAACC
TCTGCACTTTAAAAGCAAGAAGGGAATCACTCTGTCTTAAGTTTGCAAAA
TCTCTGATGAATTCACCAACGTTTCGACCCTGGCTACCCCCCACCCGCAA
TAAAGTTCACAATATGGACTTAAAAGGGGGTTTCCAGCTTAGCATACCCT
TTATAAGATCTGACAGGTACAGGAACAGTGCCATTCCGTACTTGTCAAAA
CTCCTGAACAGCGTATTGTAACTTATACCTATTGTGTAATCACCCTACTA
CCGTTTCTACATATCCTTGTTGTTCAGTTTTGGTTAGGTTTGTAAATATT
GATGATATTTTGTACAGTTGTGTATTCCCTGAAACTGCGTAATTCAGCCT
TTTTACTTTGTATCATTAGGCTGCAATGTTGTTTTAGCTCTGTATGAATT
TGCGAATAAAACCATTTATA

Coding sequence (CDS) from alignment at Sc0000005:6795701..6796720+

>transcript:BL85853_cuf0 ID=transcript:BL85853_cuf0|Name=transcript:BL85853_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=597bp|location=Sequence derived from alignment at Sc0000005:6795701..6796720+ (Branchiostoma lanceolatum)
ATGAAGGATCCTACCCCTTCCCCTGTAATGTTACTGAATGGCAAAGCCAT
TCAGTACACTGAGGATGCCTGTATTTTGGGTGTTTGGATTTCTGCCGACA
TGAAATGGGGAAAACATGTCACAACAATCATAAAAAAAGCAAGCTCGCGC
CTTTTCTGGCTTAAAAAGCTAAAACGCTCTGGTGTCTGCACTGAAGATCT
TTGCGAAATTTATTTACTATATGTCCGACCAGTCATAGAATATGCAGTCC
CAGTATGGCACGCAGGTCTAACCACTCTACAATCCCACCAACTTGAACGC
ATTCAAAAACGTGCCCTCAGAATCATACTTGGCAATAATTATACTTCCTA
TGCTGACGCACTTTCAACTTTTAACCTCTGCACTTTAAAAGCAAGAAGGG
AATCACTCTGTCTTAAGTTTGCAAAATCTCTGATGAATTCACCAACGTTT
CGACCCTGGCTACCCCCCACCCGCAATAAAGTTCACAATATGGACTTAAA
AGGGGGTTTCCAGCTTAGCATACCCTTTATAAGATCTGACAGGTACAGGA
ACAGTGCCATTCCGTACTTGTCAAAACTCCTGAACAGCGTATTGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL85853gene:BL85853Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL85853_cuf0-E1BL85853_cuf0-E1-1564476830-63669Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL85853_cuf0transcript:BL85853_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000005genomeSc0000005:6795701..6796720 +
Properties
Property NameValue
Transcript idBL85853_cuf0
Biotypeprotein_coding