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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL85814_cuf2 >transcript:BL85814_cuf2-protein ID=transcript:BL85814_cuf2-protein|Name=transcript:BL85814_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=315bp
MPQCEFVKIRENTSNKKRRKIKTEDADAIAFRGIHDIPAVYNGNYFPKTR
PEHQIWIYFPYEPPAITRGWDFVSYGSVFNWTMSYRSDSDILAPWGHITP
LYKALAENPPPPNKNYAKQTDKLVIWYASYCYKYLDRFSYARELMKHIQV
DVFGACGNVSGSCKKDRQDLSCLRDHIRPYKFYLAFENFKCVEYITEKFW
HNSLDYDVVPVVLGAPKSDYERLVPPNSFIHVDDFKSAEALANYLKYLDQ
NDDDYNRYFAWKTNPPKNLPDYESRFCELCKKLLQVSTKERKVYTDIGRW
WRGENYEFCQPMMWV Run BLAST on NCBI mRNA from alignment at Sc0000015:1208108..1209893+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL85814_cuf2 ID=transcript:BL85814_cuf2|Name=transcript:BL85814_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=1786bp|location=Sequence derived from alignment at Sc0000015:1208108..1209893+ (Branchiostoma lanceolatum)
CAAGAACAGGATCCGATGGAACTTCTCATCTCAACAGCGAACTATGCTAC
AGGTGATCAAGTGTTCCCAGCCGCACTTATGAATTAAAAAAAAAAACTCA
GCAATATGGAGTTCCAAAATCAACAGTCCCGATTTAACAAATGCGAACGT
CTTCTGATATTATGTTTCTTTATGTATGTTTCTTTTATAGTGTACAGTTA
TGTATCAACAATACAGGTTAGCCTAAGTCATTTACAGCAGTTGGTCAGTC
CAGTTGGTTTCAAGAGGACTGAAGTTTCAAAAAATAGAGTTAAAAACGTG
TCTCGTATTCAGCGTTCAGCACTTCCCAGATACAACACAACTTCGTTTCT
TCTGAGTCTACAAATCCGTTGGCACGATTTTATTCAACCTGGAACGTAGA
AGCGTCGACCCTGTCAGCAAAGAAGAAACCAGACCACAAAAAAATCATAA
TTTGGGCCACGAATCATAAATGGCCGACTCCAAAAGCGATCCCATGTCGC
TCCATGCCTCAGTGTGAATTCGTCAAGATCCGCGAGAATACTTCTAACAA
GAAACGAAGAAAGATCAAGACCGAAGATGCGGACGCCATCGCTTTCCGAG
GAATTCATGATATACCCGCAGTCTACAACGGAAATTATTTTCCTAAGACA
AGGCCTGAACATCAGATCTGGATATATTTCCCGTATGAACCTCCTGCTAT
CACAAGAGGATGGGATTTCGTGTCTTATGGAAGCGTCTTTAATTGGACCA
TGTCGTACAGAAGTGATTCTGACATTCTCGCGCCATGGGGCCATATCACC
CCGCTTTACAAAGCACTGGCTGAAAACCCTCCTCCTCCTAACAAAAATTA
CGCAAAACAGACAGATAAGCTAGTCATATGGTATGCGAGTTATTGCTATA
AATATTTGGATAGGTTCAGCTATGCTAGAGAATTGATGAAGCACATCCAA
GTGGACGTTTTTGGAGCCTGTGGAAATGTTAGTGGCTCGTGTAAGAAAGA
TAGACAAGATTTGTCCTGCTTAAGGGACCATATACGCCCGTACAAATTCT
ACTTGGCATTTGAAAACTTCAAATGTGTTGAATATATAACAGAAAAGTTC
TGGCATAACTCCCTTGATTATGATGTCGTTCCGGTCGTACTCGGCGCTCC
AAAGAGTGACTATGAAAGACTGGTTCCACCGAACTCATTCATTCATGTCG
ATGACTTCAAATCCGCAGAGGCGTTGGCAAACTACTTGAAGTATCTGGAC
CAGAACGACGATGACTACAACAGATATTTTGCTTGGAAAACCAACCCACC
GAAAAACCTCCCCGACTATGAATCCAGATTTTGTGAACTTTGTAAGAAAC
TCCTCCAGGCGTCTCCGACAGAGAGAAAGGTGTACACGGACANGCATTTG
AAAACTTCAAATGTGTTGAATATATAACAGAAAAGTTCTGGCATAACTCC
CTTGATTATGATGTCGTTCCGGTCGTACTCGGCGCTCCAAAGAGTGACTA
TGAAAGACTGGTTCCACCGAACTCATTCATTCATGTCGATGACTTCAAAT
CCGCAGAGGCGTTGGCAAACTACTTGAAGTATCTGGACCAGAACGACGAT
GACTACAACAGATATTTTGCTTGGAAAACCAACCCACCGAAAAACCTCCC
CGACTATGAATCCAGATTTTGTGAACTTTGTAAGAAACTCCTCCAGGTGT
CTACGAAAGAGAGAAAGGTGTACACGGACATAGGCAGGTGGTGGAGGGGG
GAGAACTATGAGTTCTGTCAGCCTATGATGTGGGTT Coding sequence (CDS) from alignment at Sc0000015:1208108..1209893+ >transcript:BL85814_cuf2 ID=transcript:BL85814_cuf2|Name=transcript:BL85814_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1890bp|location=Sequence derived from alignment at Sc0000015:1208108..1209893+ (Branchiostoma lanceolatum)
ATGCCTCAGTGTGAATTCGTCAAGATCCGCGAGAATACTTCTAACAAGAA
ACGAAGAAAGATCAAGACCGAAGATGCGGACGCCATCGCTTTCCGAGGAA
TTCATGATATACCCGCAGTCTACAACGGAAATTATTTTCCTAAGACAAGG
CCTGAACATCAGATCTGGATATATTTCCCGTATGAACCTCCTGCTATCAC
AAGAGGATGGGATTTCGTGTCTTATGGAAGCGTCTTTAATTGGACCATGT
CGTACAGAAGTGATTCTGACATTCTCGCGCCATGGGGCCATATCACCCCG
CTTTACAAAGCACTGGCTGAAAACCCTCCTCCTCCTAACAAAAATTACGC
AAAACAGACAGATAAGCTAGTCATATGGTATGCGAGTTATTGCTATAAAT
ATTTGGATAGGTTCAGCTATGCTAGAGAATTGATGAAGCACATCCAAGTG
GACGTTTTTGGAGCCTGTGGAAATGTTAGTGGCTCGTGTAAGAAAGATAG
ACAAGATTTGTCCTGCTTAAGGGACCATATACGCCCGTACAAATTCTACT
TGGCATTTGAAAACTTCAAATGTGTTGAATATATAACAGAAAAGTTCTGG
CATAACTCCCTTGATTATGATGTCGTTCCGGTCGTACTCGGCGCTCCAAA
GAGTGACTATGAAAGACTGGTTCCACCGAACTCATTCATTCATGTCGATG
ACTTCAAATCCGCAGAGGCGTTGGCAAACTACTTGAAGTATCTGGACCAG
AACGACGATGACTACAACAGATATTTTGCTTGGAAAACCAACCCACCGAA
AAACCTCCCCGACTATGAATCCAGATTTTGTGAACTTTGTAAGAAACTCC
TCCAGGTGTCTACGAAAGAGAGAAAGGTGTACACGGACATAGGCAGGTGG
TGGAGGGGGGAGAACTATGAGTTCTGTCAGCCTATGATGTGGGTTATGCC
TCAGTGTGAATTCGTCAAGATCCGCGAGAATACTTCTAACAAGAAACGAA
GAAAGATCAAGACCGAAGATGCGGACGCCATCGCTTTCCGAGGAATTCAT
GATATACCCGCAGTCTACAACGGAAATTATTTTCCTAAGACAAGGCCTGA
ACATCAGATCTGGATATATTTCCCGTATGAACCTCCTGCTATCACAAGAG
GATGGGATTTCGTGTCTTATGGAAGCGTCTTTAATTGGACCATGTCGTAC
AGAAGTGATTCTGACATTCTCGCGCCATGGGGCCATATCACCCCGCTTTA
CAAAGCACTGGCTGAAAACCCTCCTCCTCCTAACAAAAATTACGCAAAAC
AGACAGATAAGCTAGTCATATGGTATGCGAGTTATTGCTATAAATATTTG
GATAGGTTCAGCTATGCTAGAGAATTGATGAAGCACATCCAAGTGGACGT
TTTTGGAGCCTGTGGAAATGTTAGTGGCTCGTGTAAGAAAGATAGACAAG
ATTTGTCCTGCTTAAGGGACCATATACGCCCGTACAAATTCTACTTGGCA
TTTGAAAACTTCAAATGTGTTGAATATATAACAGAAAAGTTCTGGCATAA
CTCCCTTGATTATGATGTCGTTCCGGTCGTACTCGGCGCTCCAAAGAGTG
ACTATGAAAGACTGGTTCCACCGAACTCATTCATTCATGTCGATGACTTC
AAATCCGCAGAGGCGTTGGCAAACTACTTGAAGTATCTGGACCAGAACGA
CGATGACTACAACAGATATTTTGCTTGGAAAACCAACCCACCGAAAAACC
TCCCCGACTATGAATCCAGATTTTGTGAACTTTGTAAGAAACTCCTCCAG
GTGTCTACGAAAGAGAGAAAGGTGTACACGGACATAGGCAGGTGGTGGAG
GGGGGAGAACTATGAGTTCTGTCAGCCTATGATGTGGGTT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000015 | genome | Sc0000015:1208108..1209893 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL85814_cuf2 |
| Biotype | protein_coding |
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