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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL85773_cuf1 >transcript:BL85773_cuf1-protein ID=transcript:BL85773_cuf1-protein|Name=transcript:BL85773_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=352bp
FPVRVNKAPLCARRERQHTCRHCGHDADSACALKRHVRTHTGERPFKCDQ
CRYSANEKHHLARHIATKHGHEKPFTCGECEYATADITCLKRHIAFHTGE
RPFKCTICEYTAGVKYDLKRHMWVHSGERPFKCSLCDYTSTRKASVQRHM
VKHTGERPYRCGHCDYSAVHKGTVEDHILAAHMGAAPLLCDVCGYTTPLK
GNMRKHMNKHKNGDRYQCELCDYKTTFKCNLRLHIARHAGHKPYVCDECG
YAAGDKYKLARHMAKHSPEKPFKCHLCNFSTVLNEYLQRHLLTHTGEKRF
KCEHCGYSSPFRDNLAKHIARHRSDKPYKCSQCEYASTVKEGLKRHMKSH
HC Run BLAST on NCBI mRNA from alignment at Sc0000148:377757..381772- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL85773_cuf1 ID=transcript:BL85773_cuf1|Name=transcript:BL85773_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4016bp|location=Sequence derived from alignment at Sc0000148:377757..381772- (Branchiostoma lanceolatum)
ATTTCCAGTCCGGGTGAACAAGGCTCCCCTGTGTGTACGTGGCCGCTAAC
ACATTTAACTATGATTTTTATTTGAAAATGTTTATAAACCATACAATACT
TAATCCATGCCTCCAGCAAAAGCCACAGCACAAGCTAGCAAGAACGCTAG
AAAGGTTGGTACTTCTAGCAGCTGTTACTATTTTACCTCATGTAAGGTAA
CGTAATGAGAACGCCTAGTCAATGAATAGAATTAAAGTTAGTTGAAATGA
ATATGAGAAACTCTTCGACTTAAACAATAGGATGATTAAGGCATACGAGA
AACATGTGTGAAAATAACAATGCCATGGCTGATAATTTATTGTTATGAAA
TGCAAGGAGGAAATGTCGTTAAAATTGTATATCTACATCTGTATCTACAT
TAAGTTACCCCCAAATAACCCTTCAGGGGCAAAGTAGAGGGGTGACGTCC
CGGGCTAAGGCGGGCAGTTCTCCAGCCTGGTACGGAACGACTCAACGGTG
GGAGCCGTCGCAACCGTGCCAGGCAGAGTATTCCACTGCCCCCTGGGCTG
GTTTCAGCAAACTGTGTCTATATTGATATGGTTTTTAACAAGTTTGTAGA
AGAAGGTGATGCGGGCGTTCCTCCACCTTTCAGAGAGAAGTGGTCGTTGA
GCATTTTTTGTCACGATTTATATCAAAGAAATGTCCACATAAAACTTTAA
CTCTCATTATTCCTCAAAGTACCATGAAACCGCTACATAAAAAAGGTTGC
TCATGCCTTCCTAGGAATGTTCTAAACACGTTGATACCTGACGTGTGCAT
TCATTGAGGATTATTGATGCTTTATTTTGGAGATCTCTTTGAATTTGTCA
TTCAATATGTGAAGTGGTACTGTGAGTAGGTATATGACAATAACCTGGGG
CGCTGTTATCATGACAATTCCATTGTAACTACGGCATCGTTGTGAACACA
GGGTGTTAAATAAACACAACCCACTACAGTCTGAGAATTTCCCAACCTGA
CGGGCAAACACGAGCTCGGTACAGGGTTGCTCGGGATGCTGGTATTGTAG
TTTGTTTGCGTATGTGACTGCTGCTGGCCGGAATGACGCCCTCATGAAGA
AAAAGGCATGGCTTATGTCTCTTCATGGACGAAGTAAGTAAGTAATAGCC
ATGACGTAGTGTAATAACTTACTTAAAACGTCAGCCACTTGAAACATTAA
TAAAACAAGAGTTGAATTTTAACCAGAAAGCAAATTTTAGCTGCAAACAC
GCACAAAGGTGGCCCTGTTTCCATTACAGGATTGCAGGCTTAAGTATCAT
CTTGTCGGAAATATTAGTTTTATGCTAACGGACTCGAATTGTAGAGGTCC
AGTGTGTGATAACTAAATCTATTATTTGTGTTTGAAGACTACATAGTTCC
TCAACTTCTGGCCTATTTGCATTAGAATTTCAGAAGAAATCGGAAAGCAA
CAAGAATACAGCGCGGTTGCTTTCGCATAGTCCTAGCTTGGGGCCAAAGA
TGAAGCGAAGCCCCTCGGGAAACACAAGTTTTTGGCGCGGAATGTGATGT
TAAGTAAATAAGGTATCTTTATACGAAAACTATTACCTTATTCATCGTAT
GCGGGACGAGCAACCTCTACCTCGAGTCTACCATCAGATGCATGACGTAT
CGTTAAGCTTTCAAAGAAGAAATCAAACCCCGAATTAGTACCGTAGATAT
AGAAACTTATTGTAGACTAGCAAAATAGTTTAATCTTGTATCACATGTTT
GCCTTATGTTTTACTTAATGATTGTACTTCGTCATTGTTGTCAACTTGCA
AATAGCCTACGGGCATGAATTTGCAATAAACAAATATATTTAAACGCAGT
AAATCTAGACACTGTTACGTTATCCTGAAGGTATTTCTTTTCTATCAAAT
TCAACAATACCTTACTAAGCTCAGGATCAAGATATACTCAACAAAGACTG
CAGGCTTGCTTCCGCCATATTAGCTATTATGTTAAGATAAATAGACGGAG
CAACAAAAAGACGTTGACAAAAATATGAACCTGAATCACAAGGAGAGCGT
AAAATTTTTCAATGCTTCTTAAAAAATGGATTTTATAAGCTATAATTGTG
TTATCTTCTTTCAGGCGAGGAGAGAACGTCAGCACACTTGTCGACATTGC
GGGCACGACGCAGACAGCGCCTGCGCATTAAAGCGCCACGTGCGAACACA
CACCGGTGAGAGACCCTTCAAATGCGACCAGTGCAGATATTCAGCAAACG
AAAAGCATCATTTGGCAAGGCACATCGCGACAAAACATGGGCACGAAAAA
CCGTTTACCTGCGGAGAGTGCGAATACGCCACGGCTGACATAACGTGCTT
GAAACGCCATATCGCTTTTCACACCGGCGAGAGACCATTCAAGTGTACAA
TATGTGAATATACAGCTGGAGTTAAGTACGACTTAAAACGACACATGTGG
GTACACAGCGGTGAGAGACCGTTCAAATGTTCTCTCTGTGATTACACATC
AACGAGGAAGGCTTCTGTCCAGCGTCACATGGTAAAGCACACCGGTGAGA
GACCCTACCGTTGTGGACATTGCGACTACTCCGCTGTACACAAGGGAACA
GTGGAAGATCACATCCTAGCGGCTCACATGGGAGCTGCACCTCTCTTATG
CGATGTCTGTGGCTACACCACGCCATTGAAAGGCAACATGAGAAAACACA
TGAACAAGCATAAAAACGGCGACCGTTACCAATGCGAATTGTGCGATTAC
AAAACCACTTTCAAATGTAACCTGCGACTTCACATTGCGAGGCATGCAGG
GCACAAACCTTACGTGTGTGACGAGTGTGGATACGCAGCAGGGGACAAGT
ACAAACTCGCCCGACACATGGCCAAACATTCGCCGGAAAAACCATTCAAG
TGTCACCTCTGCAACTTCTCCACCGTTCTAAACGAGTACTTACAACGTCA
CTTGCTGACTCACACAGGAGAGAAACGTTTCAAGTGTGAACACTGTGGTT
ATTCGAGCCCCTTCAGAGATAATCTGGCAAAACACATTGCCAGGCACAGA
AGTGATAAACCGTATAAATGCAGTCAGTGTGAGTACGCCTCTACTGTCAA
AGAAGGTCTCAAGCGCCATATGAAAAGTCACCACTGTTAACTTAAACAAG
ATGAATGCATTGTTTTTGTTTGAAGGCATCGTTAATTGAGAGTAGTTTTG
GTGCTTTTGAAAGTAGCTAGTAGTACAATACGGCTTCGCTTAAGCTCGCG
TTGCCACCATTGTTCTGTACAAGTGTGTTGGGTTTTTTAAACATGAAGAA
TTTTGACGCCTTTAGCAACGGGTAGCCAGGGTCCCGCCTGTATGACCTAA
ACGTGAAGAAATATAAGCATTTGTACGTTATATTCCCCGGCCAGCTAACT
CCTCTGGCATGTCATCTGTCTATTTGGCAAATTTCTACTATCTTCCCAGC
GACCTGTGGAGCCTGGTAGAGGCTACGTTAAACGCCAATCGGTCTACCAT
ACAGATATCGCATCAGATATTGTTATGAATATTCCCTATGAAATGAGAGT
TGGCTAAGATTTGAAGAGAGACAATATTGCGGTTGTCACAGCTGGGCATG
CCAAGTAATTTCGCGGCCTTATGTGGAAACAGACCGCACTTGAGTCGGGC
TTGTGCTGAGTTTTACTCCAAATATTCTTTGGAATGCATGTGTGAAATGG
GCCTTCAACATGGTCTCGAGGTTGATCAAGTCGAGTTTGGGAAAATGGTG
CTTGAGTACCCTAAATTTTACACGTGTTTTCAAGTACACTTGGAGCAAAC
TGAACGCACGAAATGGCTTCGGATACTGACGTATCCGGACGGAATCCGAC
ATTTAAGATCCAAAAGAATCCAAACGGATCCGGGCCGTGTATATAGTATT
TGCAAAACTCAAATTTACCTGTATTTACCTGCAAACATTGACGCGGATGT
CTCCAAACCTGCCCCAAAGGATTACTTAGCCACGTCACTTCCGTATTGTT
TAGTATTTGATGGGGG Coding sequence (CDS) from alignment at Sc0000148:377757..381772- >transcript:BL85773_cuf1 ID=transcript:BL85773_cuf1|Name=transcript:BL85773_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2118bp|location=Sequence derived from alignment at Sc0000148:377757..381772- (Branchiostoma lanceolatum)
TTTCCAGTCCGGGTGAACAAGGCTCCCCTGTGTGCGAGGAGAGAACGTCA
GCACACTTGTCGACATTGCGGGCACGACGCAGACAGCGCCTGCGCATTAA
AGCGCCACGTGCGAACACACACCGGTGAGAGACCCTTCAAATGCGACCAG
TGCAGATATTCAGCAAACGAAAAGCATCATTTGGCAAGGCACATCGCGAC
AAAACATGGGCACGAAAAACCGTTTACCTGCGGAGAGTGCGAATACGCCA
CGGCTGACATAACGTGCTTGAAACGCCATATCGCTTTTCACACCGGCGAG
AGACCATTCAAGTGTACAATATGTGAATATACAGCTGGAGTTAAGTACGA
CTTAAAACGACACATGTGGGTACACAGCGGTGAGAGACCGTTCAAATGTT
CTCTCTGTGATTACACATCAACGAGGAAGGCTTCTGTCCAGCGTCACATG
GTAAAGCACACCGGTGAGAGACCCTACCGTTGTGGACATTGCGACTACTC
CGCTGTACACAAGGGAACAGTGGAAGATCACATCCTAGCGGCTCACATGG
GAGCTGCACCTCTCTTATGCGATGTCTGTGGCTACACCACGCCATTGAAA
GGCAACATGAGAAAACACATGAACAAGCATAAAAACGGCGACCGTTACCA
ATGCGAATTGTGCGATTACAAAACCACTTTCAAATGTAACCTGCGACTTC
ACATTGCGAGGCATGCAGGGCACAAACCTTACGTGTGTGACGAGTGTGGA
TACGCAGCAGGGGACAAGTACAAACTCGCCCGACACATGGCCAAACATTC
GCCGGAAAAACCATTCAAGTGTCACCTCTGCAACTTCTCCACCGTTCTAA
ACGAGTACTTACAACGTCACTTGCTGACTCACACAGGAGAGAAACGTTTC
AAGTGTGAACACTGTGGTTATTCGAGCCCCTTCAGAGATAATCTGGCAAA
ACACATTGCCAGGCACAGAAGTGATAAACCGTATAAATGCAGTCAGTGTG
AGTACGCCTCTACTGTCAAAGAAGGTCTCAAGCGCCATATGAAAAGTCAC
CACTGTTAATTTCCAGTCCGGGTGAACAAGGCTCCCCTGTGTGCGAGGAG
AGAACGTCAGCACACTTGTCGACATTGCGGGCACGACGCAGACAGCGCCT
GCGCATTAAAGCGCCACGTGCGAACACACACCGGTGAGAGACCCTTCAAA
TGCGACCAGTGCAGATATTCAGCAAACGAAAAGCATCATTTGGCAAGGCA
CATCGCGACAAAACATGGGCACGAAAAACCGTTTACCTGCGGAGAGTGCG
AATACGCCACGGCTGACATAACGTGCTTGAAACGCCATATCGCTTTTCAC
ACCGGCGAGAGACCATTCAAGTGTACAATATGTGAATATACAGCTGGAGT
TAAGTACGACTTAAAACGACACATGTGGGTACACAGCGGTGAGAGACCGT
TCAAATGTTCTCTCTGTGATTACACATCAACGAGGAAGGCTTCTGTCCAG
CGTCACATGGTAAAGCACACCGGTGAGAGACCCTACCGTTGTGGACATTG
CGACTACTCCGCTGTACACAAGGGAACAGTGGAAGATCACATCCTAGCGG
CTCACATGGGAGCTGCACCTCTCTTATGCGATGTCTGTGGCTACACCACG
CCATTGAAAGGCAACATGAGAAAACACATGAACAAGCATAAAAACGGCGA
CCGTTACCAATGCGAATTGTGCGATTACAAAACCACTTTCAAATGTAACC
TGCGACTTCACATTGCGAGGCATGCAGGGCACAAACCTTACGTGTGTGAC
GAGTGTGGATACGCAGCAGGGGACAAGTACAAACTCGCCCGACACATGGC
CAAACATTCGCCGGAAAAACCATTCAAGTGTCACCTCTGCAACTTCTCCA
CCGTTCTAAACGAGTACTTACAACGTCACTTGCTGACTCACACAGGAGAG
AAACGTTTCAAGTGTGAACACTGTGGTTATTCGAGCCCCTTCAGAGATAA
TCTGGCAAAACACATTGCCAGGCACAGAAGTGATAAACCGTATAAATGCA
GTCAGTGTGAGTACGCCTCTACTGTCAAAGAAGGTCTCAAGCGCCATATG
AAAAGTCACCACTGTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000148 | genome | Sc0000148:377757..381772 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL85773_cuf1 |
| Biotype | protein_coding |
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