transcript:BL84540_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL84540_cuf0
Unique Nametranscript:BL84540_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL84540_cuf0

>transcript:BL84540_cuf0-protein ID=transcript:BL84540_cuf0-protein|Name=transcript:BL84540_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=157bp
GETSDRTHLTCGVAQGTILGPIIFMAMIDGALRDVHDRWKYVDDMNLAQT
RFIVQPCSLQLTLDNLNIWVDQHKMKLNPRKCKVLHVCFARTPPQPEPLT
IDGQELETVESVKIVGVTVQSDLKWNLHVSQMISGANRKLYLLRRLKRFG
VSVTDLT
Run BLAST on NCBI

mRNA from alignment at Sc0000364:18805..19277-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL84540_cuf0 ID=transcript:BL84540_cuf0|Name=transcript:BL84540_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=473bp|location=Sequence derived from alignment at Sc0000364:18805..19277- (Branchiostoma lanceolatum)
GGGAGAAACATCTGACAGGACCCACCTTACCTGCGGTGTGGCCCAAGGCA
CCATCTTAGGGCCGATCATATTCATGGCCATGATCGACGGGGCACTACGG
GATGTTCATGACAGGTGGAAATACGTGGACGATATGAACTTGGCACAAAC
GCGGTTCATAGTTCAACCATGCAGTCTCCAGCTAACCTTGGACAATCTTA
ACATCTGGGTTGATCAACACAAAATGAAACTGAACCCACGGAAATGCAAA
GTTCTCCACGTCTGCTTTGCAAGAACACCACCACAACCGGAACCACTCAC
CATTGATGGTCAAGAGTTGGAAACCGTGGAGTCGGTCAAAATAGTAGGGG
TGACTGTCCAAAGTGACTTAAAGTGGAACCTGCACGTCTCCCAGATGATC
TCGGGTGCAAACAGAAAACTCTATCTATTACGTAGACTCAAGCGCTTCGG
CGTATCCGTTACCGATCTGACGA

Coding sequence (CDS) from alignment at Sc0000364:18805..19277-

>transcript:BL84540_cuf0 ID=transcript:BL84540_cuf0|Name=transcript:BL84540_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=471bp|location=Sequence derived from alignment at Sc0000364:18805..19277- (Branchiostoma lanceolatum)
GGAGAAACATCTGACAGGACCCACCTTACCTGCGGTGTGGCCCAAGGCAC
CATCTTAGGGCCGATCATATTCATGGCCATGATCGACGGGGCACTACGGG
ATGTTCATGACAGGTGGAAATACGTGGACGATATGAACTTGGCACAAACG
CGGTTCATAGTTCAACCATGCAGTCTCCAGCTAACCTTGGACAATCTTAA
CATCTGGGTTGATCAACACAAAATGAAACTGAACCCACGGAAATGCAAAG
TTCTCCACGTCTGCTTTGCAAGAACACCACCACAACCGGAACCACTCACC
ATTGATGGTCAAGAGTTGGAAACCGTGGAGTCGGTCAAAATAGTAGGGGT
GACTGTCCAAAGTGACTTAAAGTGGAACCTGCACGTCTCCCAGATGATCT
CGGGTGCAAACAGAAAACTCTATCTATTACGTAGACTCAAGCGCTTCGGC
GTATCCGTTACCGATCTGACG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL84540gene:BL84540Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL84540_cuf0-E1BL84540_cuf0-E1-1564476830-449347Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL84540_cuf0transcript:BL84540_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000364genomeSc0000364:18805..19277 -
Properties
Property NameValue
Transcript idBL84540_cuf0
Biotypeprotein_coding