transcript:BL83865_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL83865_cuf0
Unique Nametranscript:BL83865_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL83865_cuf0

>transcript:BL83865_cuf0-protein ID=transcript:BL83865_cuf0-protein|Name=transcript:BL83865_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=158bp
SIPGLKTLVSALIQSVINLRDVLILTVFALCVFALVALQIYMGQLRQKCI
RNIPEFMNISEYLSFWPNSTLPDEYWDNYTSWAGLGEDFLVTVPNITDQM
WFLWNNNTGMSVYVRKLHTDESFHFILSGFLTCPLPLNQLFFHSYLLLIL
KLTYFSRM
Run BLAST on NCBI

mRNA from alignment at xfSc0022259:199..698+

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL83865_cuf0 ID=transcript:BL83865_cuf0|Name=transcript:BL83865_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=500bp|location=Sequence derived from alignment at xfSc0022259:199..698+ (Branchiostoma lanceolatum)
TCTATTCCAGGTCTGAAGACCCTGGTCAGCGCTTTGATCCAGTCTGTTAT
TAACCTTCGAGACGTCCTGATCCTGACCGTCTTCGCCCTCTGTGTGTTTG
CCTTAGTCGCTCTCCAAATCTACATGGGACAGCTTCGCCAAAAGTGCATT
AGAAATATTCCCGAATTCATGAACATTTCCGAGTACCTCTCTTTCTGGCC
CAATTCAACTTTACCTGACGAATATTGGGACAATTATACCAGTTGGGCAG
GATTAGGGGAGGACTTTTTGGTCACAGTTCCAAATATCACAGATCAGATG
TGGTTTCTTTGGAACAATAATACAGGTATGTCTGTATATGTTAGAAAATT
ACATACAGACGAATCTTTTCATTTCATCTTATCTGGTTTTCTGACATGCC
CGCTTCCACTTAACCAGCTCTTCTTTCATTCTTATTTACTTCTAATCCTC
AAGCTGACATATTTTTCACGCATGTAATTGACGAATCGCTTACACACAGG

Coding sequence (CDS) from alignment at xfSc0022259:199..698+

>transcript:BL83865_cuf0 ID=transcript:BL83865_cuf0|Name=transcript:BL83865_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=477bp|location=Sequence derived from alignment at xfSc0022259:199..698+ (Branchiostoma lanceolatum)
TCTATTCCAGGTCTGAAGACCCTGGTCAGCGCTTTGATCCAGTCTGTTAT
TAACCTTCGAGACGTCCTGATCCTGACCGTCTTCGCCCTCTGTGTGTTTG
CCTTAGTCGCTCTCCAAATCTACATGGGACAGCTTCGCCAAAAGTGCATT
AGAAATATTCCCGAATTCATGAACATTTCCGAGTACCTCTCTTTCTGGCC
CAATTCAACTTTACCTGACGAATATTGGGACAATTATACCAGTTGGGCAG
GATTAGGGGAGGACTTTTTGGTCACAGTTCCAAATATCACAGATCAGATG
TGGTTTCTTTGGAACAATAATACAGGTATGTCTGTATATGTTAGAAAATT
ACATACAGACGAATCTTTTCATTTCATCTTATCTGGTTTTCTGACATGCC
CGCTTCCACTTAACCAGCTCTTCTTTCATTCTTATTTACTTCTAATCCTC
AAGCTGACATATTTTTCACGCATGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL83865gene:BL83865Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL83865_cuf0-E1BL83865_cuf0-E1-1564476830-546378Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL83865_cuf0transcript:BL83865_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0022259genomexfSc0022259:199..698 +
Properties
Property NameValue
Transcript idBL83865_cuf0
Biotypeprotein_coding