transcript:BL83666_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL83666_cuf0
Unique Nametranscript:BL83666_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL83666_cuf0

>transcript:BL83666_cuf0-protein ID=transcript:BL83666_cuf0-protein|Name=transcript:BL83666_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=226bp
LAEIAAKILLAAGKTEESSDNLVYPLEVKLPTDPQPGYMKLAEMASPRIV
LTHLPIKFAPQWISKPQTKVKVLVPIRNPKDTAVSMFHFLKNVLPMIGAN
VDLRWEDFAQEFSRGLVPYGDYCDHLSGWWQMRDDPHFLFLKYEDMKKNL
PSAVKTIAAFLEIDLSESTVQDIAEASTFNNVKPVLDNSTIPIRRNIARK
GWYPRHWPQGGGDIVRTADQGQAIVL
Run BLAST on NCBI

mRNA from alignment at Sc0000042:644061..646212+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL83666_cuf0 ID=transcript:BL83666_cuf0|Name=transcript:BL83666_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2152bp|location=Sequence derived from alignment at Sc0000042:644061..646212+ (Branchiostoma lanceolatum)
GGCTGGCAGAGATCGCAGCTAAGATCCTACTAGCCGCGGGAAAAACAGAA
GAAAGTTCGGACAACCTTGTCTACCCCTTGGAGGTGAAGCTACCGACAGA
CCCACAGCCCGGCTACATGAAGCTTGCAGAGATGGCCTCCCCTCGTATCG
TGTTGACACATCTACCAATCAAGTTTGCCCCGCAATGGATATCCAAGCCA
CAGACTAAGGTAATTTCAAAGTAGCCCAAAGAAATATAAAGAGGGCTGCC
CTGACTTGACAGGCCTTGTCACGCGCTTGAACTCACCACGGCGCTCCGTC
GCTAGTTGCCAGCTATCAAAATGGTCATGTTCTGATGAACGAAATTTGGA
CATATTGATCTTTATAACATATATAAGTAAGAAATGTATTCATCAATATA
ACCAATTTGCTCGGCATTACAACTGGTATACGCGGCACTACGTTTTCGTA
AATTACATTTCTACTTTAAGCGAGAACACGAGGGTGTCATAACTTCGGAC
GCTTTTGTACTTTTGTCTTCAGAATTCGTTGATGGCTTTGAGTAAACAGA
AAATTATCTAGAATGTAGAATATTCTGGCTTTTATTTCTGAGAGTTGGTA
AGGACGTCTGTATCTGTATCTATATAGACTTACATGTAAATCAAAGCACA
ATAGATAGTGTCTTAACATTTGGTGTTGATAACCAATGTCTGACACCTTA
ATAAGAGCAGCTAAAGATGATCATACTGCTGTTTATGCAGGACTCGTTTC
AGTAGTGCGGTCCCGTCTCTAATATTCTCACGACAGGTGAAGGTGCTGGT
GCCGATAAGGAACCCGAAGGACACGGCGGTGTCGATGTTTCACTTCTTGA
AGAATGTGCTGCCAATGATTGGGGCGAACGTGGACCTGCGCTGGGAAGAC
TTTGCTCAGGAATTTAGCCGCGGACTAGGTCAGTTATAAAATAAATAAAA
AAATGAAATGATAAAAGTTATACATGCGATTCCGGTATCCACTGACTGGT
CAGAACTGAGGATAGATATGTTAAAGACGTGGGTGAATTATTGAATGAAT
AATAGAGTAAATGAATGAATCAATGGACAAATAAATGAATGAGTGAATTA
ATGAATGCATGAATGAATGAATTGTTCCCCGCAAACATGAGCTTATTTGA
CACCAAACTTTAAAGTTACATAGATATTGCAATATCACATAAGACGAGTG
TGCAAAGGGAGAGTATGCAAAGCATGTCGTTGGAAGCACTTTTATATGCG
CAATTTGCTTAAACTTGCTCCATGATCCGTCCCTAGTGCCATACGGAGAC
TACTGTGACCACCTGTCGGGGTGGTGGCAGATGCGGGACGACCCCCACTT
CCTCTTCCTTAAATATGAGGACATGAAGAAGGTAGAGTACAGATGTCACT
GCATTGTACGCCAAAAAAAAAAATACTCAAGCAACTGGATACAATTTCCA
AACGTCTGACCATTTCCGAAATCATATCCAGTTGCTTGAGTAACTGCTTT
TTGGCGTATACCATTTACATGGATGTTAACCTGCATCGACGCCAATGCAT
TGTTACCTGAATGTTACCTGTTGACAGAATAAAGGTATGTCCGGATGAAA
TTATCAGAACCCGCTCACACGACCTTTCCACTAGGGCGGAGAACGCAGAG
CGACCAAAGATTTGACATATTGCTCATCTAATTTTGTTGTCTTTTAAATC
ATACTTGTACATCTTGCATTGTATGATATAATCCAGTTATGAAAGCAATG
GTCACACAAAGACAATTTTGGTCGCTTAACGGTCACCCAGTGATCACCGT
CTAGTGGAAATGAGGTCTGAGTTATCGTATGTTGGGCATATCAGAGTTAG
TCGGTAGGCATGACGGTTTTTTTATTTGTTCAAGTTGTGCAAGAAAAAAA
AAAATTACTCTTCCAGAATCTTCCGAGCGCTGTTAAGACCATTGCGGCAT
TTCTGGAGATTGATCTGAGCGAATCGACCGTACAAGACATCGCAGAGGCC
AGCACTTTCAACAACGTGAAGCCAGTCCTGGACAATTCCACCATTCCTAT
CAGAAGGAACATAGCCAGGAAAGGTTGGTATCCAAGACATTGGCCTCAAG
GAGGAGGCGATATAGTTCGAACAGCTGACCAAGGTCAAGCGATTGTATTA
GG

Coding sequence (CDS) from alignment at Sc0000042:644061..646212+

>transcript:BL83666_cuf0 ID=transcript:BL83666_cuf0|Name=transcript:BL83666_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2712bp|location=Sequence derived from alignment at Sc0000042:644061..646212+ (Branchiostoma lanceolatum)
CTGGCAGAGATCGCAGCTAAGATCCTACTAGCCGCGGGAAAAACAGAAGA
AAGTTCGGACAACCTTGTCTACCCCTTGGAGGTGAAGCTACCGACAGACC
CACAGCCCGGCTACATGAAGCTTGCAGAGATGGCCTCCCCTCGTATCGTG
TTGACACATCTACCAATCAAGTTTGCCCCGCAATGGATATCCAAGCCACA
GACTAAGGTGAAGGTGCTGGTGCCGATAAGGAACCCGAAGGACACGGCGG
TGTCGATGTTTCACTTCTTGAAGAATGTGCTGCCAATGATTGGGGCGAAC
GTGGACCTGCGCTGGGAAGACTTTGCTCAGGAATTTAGCCGCGGACTAGT
GCCATACGGAGACTACTGTGACCACCTGTCGGGGTGGTGGCAGATGCGGG
ACGACCCCCACTTCCTCTTCCTTAAATATGAGGACATGAAGAAGAATCTT
CCGAGCGCTGTTAAGACCATTGCGGCATTTCTGGAGATTGATCTGAGCGA
ATCGACCGTACAAGACATCGCAGAGGCCAGCACTTTCAACAACGTGAAGC
CAGTCCTGGACAATTCCACCATTCCTATCAGAAGGAACATAGCCAGGAAA
GGTTGGTATCCAAGACATTGGCCTCAAGGAGGAGGCGATATAGTTCGAAC
AGCTGACCAAGGTCAAGCGATTGTATTACTGGCAGAGATCGCAGCTAAGA
TCCTACTAGCCGCGGGAAAAACAGAAGAAAGTTCGGACAACCTTGTCTAC
CCCTTGGAGGTGAAGCTACCGACAGACCCACAGCCCGGCTACATGAAGCT
TGCAGAGATGGCCTCCCCTCGTATCGTGTTGACACATCTACCAATCAAGT
TTGCCCCGCAATGGATATCCAAGCCACAGACTAAGGTGAAGGTGCTGGTG
CCGATAAGGAACCCGAAGGACACGGCGGTGTCGATGTTTCACTTCTTGAA
GAATGTGCTGCCAATGATTGGGGCGAACGTGGACCTGCGCTGGGAAGACT
TTGCTCAGGAATTTAGCCGCGGACTAGTGCCATACGGAGACTACTGTGAC
CACCTGTCGGGGTGGTGGCAGATGCGGGACGACCCCCACTTCCTCTTCCT
TAAATATGAGGACATGAAGAAGAATCTTCCGAGCGCTGTTAAGACCATTG
CGGCATTTCTGGAGATTGATCTGAGCGAATCGACCGTACAAGACATCGCA
GAGGCCAGCACTTTCAACAACGTGAAGCCAGTCCTGGACAATTCCACCAT
TCCTATCAGAAGGAACATAGCCAGGAAAGGTTGGTATCCAAGACATTGGC
CTCAAGGAGGAGGCGATATAGTTCGAACAGCTGACCAAGGTCAAGCGATT
GTATTACTGGCAGAGATCGCAGCTAAGATCCTACTAGCCGCGGGAAAAAC
AGAAGAAAGTTCGGACAACCTTGTCTACCCCTTGGAGGTGAAGCTACCGA
CAGACCCACAGCCCGGCTACATGAAGCTTGCAGAGATGGCCTCCCCTCGT
ATCGTGTTGACACATCTACCAATCAAGTTTGCCCCGCAATGGATATCCAA
GCCACAGACTAAGGTGAAGGTGCTGGTGCCGATAAGGAACCCGAAGGACA
CGGCGGTGTCGATGTTTCACTTCTTGAAGAATGTGCTGCCAATGATTGGG
GCGAACGTGGACCTGCGCTGGGAAGACTTTGCTCAGGAATTTAGCCGCGG
ACTAGTGCCATACGGAGACTACTGTGACCACCTGTCGGGGTGGTGGCAGA
TGCGGGACGACCCCCACTTCCTCTTCCTTAAATATGAGGACATGAAGAAG
AATCTTCCGAGCGCTGTTAAGACCATTGCGGCATTTCTGGAGATTGATCT
GAGCGAATCGACCGTACAAGACATCGCAGAGGCCAGCACTTTCAACAACG
TGAAGCCAGTCCTGGACAATTCCACCATTCCTATCAGAAGGAACATAGCC
AGGAAAGGTTGGTATCCAAGACATTGGCCTCAAGGAGGAGGCGATATAGT
TCGAACAGCTGACCAAGGTCAAGCGATTGTATTACTGGCAGAGATCGCAG
CTAAGATCCTACTAGCCGCGGGAAAAACAGAAGAAAGTTCGGACAACCTT
GTCTACCCCTTGGAGGTGAAGCTACCGACAGACCCACAGCCCGGCTACAT
GAAGCTTGCAGAGATGGCCTCCCCTCGTATCGTGTTGACACATCTACCAA
TCAAGTTTGCCCCGCAATGGATATCCAAGCCACAGACTAAGGTGAAGGTG
CTGGTGCCGATAAGGAACCCGAAGGACACGGCGGTGTCGATGTTTCACTT
CTTGAAGAATGTGCTGCCAATGATTGGGGCGAACGTGGACCTGCGCTGGG
AAGACTTTGCTCAGGAATTTAGCCGCGGACTAGTGCCATACGGAGACTAC
TGTGACCACCTGTCGGGGTGGTGGCAGATGCGGGACGACCCCCACTTCCT
CTTCCTTAAATATGAGGACATGAAGAAGAATCTTCCGAGCGCTGTTAAGA
CCATTGCGGCATTTCTGGAGATTGATCTGAGCGAATCGACCGTACAAGAC
ATCGCAGAGGCCAGCACTTTCAACAACGTGAAGCCAGTCCTGGACAATTC
CACCATTCCTATCAGAAGGAACATAGCCAGGAAAGGTTGGTATCCAAGAC
ATTGGCCTCAAGGAGGAGGCGATATAGTTCGAACAGCTGACCAAGGTCAA
GCGATTGTATTA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL83666gene:BL83666Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL83666_cuf0transcript:BL83666_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL83666_cuf0-E1BL83666_cuf0-E1-1564476830-207620Branchiostoma lanceolatumexon
BL83666_cuf0-E2BL83666_cuf0-E2-1564476830-207622Branchiostoma lanceolatumexon
BL83666_cuf0-E3BL83666_cuf0-E3-1564476830-207624Branchiostoma lanceolatumexon
BL83666_cuf0-E4BL83666_cuf0-E4-1564476830-207627Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000042genomeSc0000042:644061..646212 +
Properties
Property NameValue
Transcript idBL83666_cuf0
Biotypeprotein_coding