transcript:BL82100_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL82100_cuf0
Unique Nametranscript:BL82100_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL82100_cuf0

>transcript:BL82100_cuf0-protein ID=transcript:BL82100_cuf0-protein|Name=transcript:BL82100_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=118bp
NRTLSRQSFCYPADQAATPREGSRRSTTGLEGARSSAPAGEDGRADGRPE
PAPGQALRGGQPGSRRCGGGPNGDGSPLPSACEYALRTRRFETRPSALPA
DASGRESAGPFLTGRLGR
Run BLAST on NCBI

mRNA from alignment at Sc0001868:173..631+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL82100_cuf0 ID=transcript:BL82100_cuf0|Name=transcript:BL82100_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=459bp|location=Sequence derived from alignment at Sc0001868:173..631+ (Branchiostoma lanceolatum)
CAATCGCACACTCTCTCGCCAGTCGTTTTGCTACCCCGCCGACCAGGCTG
CCACTCCCCGCGAGGGCAGCCGGAGGTCGACAACCGGCTTGGAAGGCGCC
CGCTCCTCCGCTCCTGCGGGCGAGGACGGGCGTGCCGACGGGCGTCCGGA
ACCAGCGCCGGGGCAGGCCCTCCGCGGAGGGCAGCCCGGGTCCCGCCGCT
GCGGCGGCGGACCCAACGGCGACGGCTCGCCCCTTCCGTCTGCGTGCGAG
TACGCCTTGCGGACTCGGCGGTTCGAGACCCGGCCGTCCGCCTTGCCGGC
GGACGCGTCCGGTCGTGAGAGTGCGGGACCGTTCCTGACGGGACGGCTCG
GGCGTTGAAGGGAAGCAACGGTCAGGTGTGGCCGGGAGTTCTGCGCTCAG
GCTCCCGAGGGTTCGCGGCCATCTCCACGGCGCGTTCCCACCTCACGGCA
GCGANTCGG

Coding sequence (CDS) from alignment at Sc0001868:173..631+

>transcript:BL82100_cuf0 ID=transcript:BL82100_cuf0|Name=transcript:BL82100_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=357bp|location=Sequence derived from alignment at Sc0001868:173..631+ (Branchiostoma lanceolatum)
AATCGCACACTCTCTCGCCAGTCGTTTTGCTACCCCGCCGACCAGGCTGC
CACTCCCCGCGAGGGCAGCCGGAGGTCGACAACCGGCTTGGAAGGCGCCC
GCTCCTCCGCTCCTGCGGGCGAGGACGGGCGTGCCGACGGGCGTCCGGAA
CCAGCGCCGGGGCAGGCCCTCCGCGGAGGGCAGCCCGGGTCCCGCCGCTG
CGGCGGCGGACCCAACGGCGACGGCTCGCCCCTTCCGTCTGCGTGCGAGT
ACGCCTTGCGGACTCGGCGGTTCGAGACCCGGCCGTCCGCCTTGCCGGCG
GACGCGTCCGGTCGTGAGAGTGCGGGACCGTTCCTGACGGGACGGCTCGG
GCGTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL82100gene:BL82100Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL82100_cuf0-E1BL82100_cuf0-E1-1564476830-511340Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL82100_cuf0transcript:BL82100_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0001868genomeSc0001868:173..631 +
Properties
Property NameValue
Transcript idBL82100_cuf0
Biotypeprotein_coding