|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL82080_cuf0 >transcript:BL82080_cuf0-protein ID=transcript:BL82080_cuf0-protein|Name=transcript:BL82080_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=162bp
ETLTTVEENGGIIVTAPSGSLTTEGQPDQATAPGVLTTEGQADQATPPGG
LITEGQPDQATPPGVLTTEGQPDQATPPGVLPTEGQPDLATPPGVLTTAG
QPDLATPPGGTTGIAALTTDNGAETETEGDEYSEATVATTGGGLLASIIL
AHVILAFYDMFA Run BLAST on NCBI mRNA from alignment at Sc0000625:63037..65186+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL82080_cuf0 ID=transcript:BL82080_cuf0|Name=transcript:BL82080_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2150bp|location=Sequence derived from alignment at Sc0000625:63037..65186+ (Branchiostoma lanceolatum)
GAGACTTTGACCACCGTAGAAGAGAATGGTGGCATAATAGTTACAGCACC
TTCTGGTAGCCTGACCACCGAAGGGCAGCCTGACCAAGCCACGGCCCCCG
GCGTTCTGACCACCGAAGGGCAGGCTGACCAAGCCACGCCCCCTGGCGGT
CTAATTACCGAAGGACAGCCTGACCAAGCCACGCCCCCCGGCGTTCTGAC
CACCGAAGGACAGCCTGACCAAGCCACGCCTCCTGGCGTTCTGCCCACCG
AAGGGCAGCCTGACCTAGCCACTCCCCCTGGCGTCCTTACCACCGCAGGA
CAGCCTGACCTAGCCACTCCCCCTGGCGGTACAACAGGCATTNTCCCCCT
AGCGTCCTTACCACCGCAGGACAGCCTGACCTAGCCACTCCCCCTGGCGG
TACAACAGGCATTGCAGCCTTGACAACTGATAACGGTAAGAAAACGGCCC
TCATTTGTTGAGCAAAGTCAAATTTTTTGNTTTGTATGGAATCCATCGTG
CGTTATATATCTTATAATGTCCACCGAGAGCATCTGTGAGCAGTGCATAC
GCAATGCCACTGGAACAAAATTAACGGCATACCATTTTTTCAGAGATCAT
TTCTTATAAGAATATTACAAAATACCCTTATTCTGAAAAATCTCATGTTG
TACATTCGTGTATACACGAGTAACTGCATTAGTACATTATAAGCAACAAA
GCTGATATTTGATCTCACACAGGTTATGTTTTTTTCCATACTCTTCTAGC
CTACATAGAAACAGTGCCATACTTTGATTTCCAATTGCCATTTTTACAAG
CTAGATTTTTAAACGTGAGGTGCAAAGTTTCCCCCAATATTCTTCATGGT
AGGTAAAATGATGTCAATTTTCATTAAAAACAACCGAAGTTTGTAGCAGA
ATGCAAACAATCTATAAGAGAAATGTGTAATGTTTTTTATACATCTTTTT
CTCAAAAGGAGCTGAGACTGAGACTGAAGGAGACGAATGTGAGCTGCTAT
TTTTTATATCTTCTGACCGTAAAAATTAAGTTCACATACCAAAACAATTT
CACTCACCTCAACGACTTACTACAGTATACATATATATGTTATCATATTA
ACGTTACGTTCAGCGTCACCATTCCACGATAAGCGAAATAAGCCATAACT
TTCGACATCACATATTTATACAAATAAGTAGTCACTTGTTATGATGCTGA
AAATTGGCCAAAGGGCATTGACCTCGGATGTACAATGCACTGTGTAAGAT
AGGCAGTTGTGTTGTCATAAATGATTTTAAAATACCATTTGAGATTGTTA
TGGTTCTAAACATTGAAGAAAATGAATTTTTTTTCATATTTTGCTGCAAG
TTTATCTTAAACTATGAAAATACTTTTTTAAGATTAACCTCTACACACAA
AAAGCTAACTTAGCCATAATTGCTTAAAATATCTATAAAAGTGTTGTATT
TTCTATTCATAACCAAGTCTGTACATTAATTTTGTTATTGGACAGAATGT
AAGATACTCTTCTGCTTGTTTTTGACAGACTCGGAGGCTACTGTTGCTAC
CACTGGCGGCGGCTTGCTGGCCTCAATCATTCTGGCTCACGTTATCTTGG
CTTTTTACGACATGTTCGCCTAGGGCAGACCCCGCCAAAGGACCAACACG
CACCAACTGCATTTGTCTTATATTGCAGCACAGTTGTAGGATAGTATCGT
AATGATGTAACCTGCATGCACATCGAGAAAAAGCTAAACTTTGATACACA
ACGACACTCTTCTCTCAGACGTCGAATAGGACTGCGGGAAACAGAGGTGT
GGTCTATAAAGAAATGTGGTTCTTAAAAGGATAGGTCTATGAAGAATCTT
TCTTATTACACATAATGACACCATGGTAGCATTCACATGTATGTTATCCC
GCAAAATATAGTTTTCCCTTTCAGTAGATTCCATGAATTAAAGAAAAATA
ATGATATTTGAGTGCTCTCCTTTTCCGGACTCTTTTGGTCATATTCCGTT
TAATCGTGACATAGTAAACTGATTATTAATTAGATTGCCCTGGTCATGAA
AGTCGCGAAATTTTTTTTTCTTGTTTGATGATCAAAAACTAAATACCAAA
ATATCAAGAGCAAATTTTACAGTCAAACATAAACTCTTACCACATTTTTA
Coding sequence (CDS) from alignment at Sc0000625:63037..65186+ >transcript:BL82080_cuf0 ID=transcript:BL82080_cuf0|Name=transcript:BL82080_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1956bp|location=Sequence derived from alignment at Sc0000625:63037..65186+ (Branchiostoma lanceolatum)
GAGACTTTGACCACCGTAGAAGAGAATGGTGGCATAATAGTTACAGCACC
TTCTGGTAGCCTGACCACCGAAGGGCAGCCTGACCAAGCCACGGCCCCCG
GCGTTCTGACCACCGAAGGGCAGGCTGACCAAGCCACGCCCCCTGGCGGT
CTAATTACCGAAGGACAGCCTGACCAAGCCACGCCCCCCGGCGTTCTGAC
CACCGAAGGACAGCCTGACCAAGCCACGCCTCCTGGCGTTCTGCCCACCG
AAGGGCAGCCTGACCTAGCCACTCCCCCTGGCGTCCTTACCACCGCAGGA
CAGCCTGACCTAGCCACTCCCCCTGGCGGTACAACAGGCATTGCAGCCTT
GACAACTGATAACGGAGCTGAGACTGAGACTGAAGGAGACGAATACTCGG
AGGCTACTGTTGCTACCACTGGCGGCGGCTTGCTGGCCTCAATCATTCTG
GCTCACGTTATCTTGGCTTTTTACGACATGTTCGCCTAGGAGACTTTGAC
CACCGTAGAAGAGAATGGTGGCATAATAGTTACAGCACCTTCTGGTAGCC
TGACCACCGAAGGGCAGCCTGACCAAGCCACGGCCCCCGGCGTTCTGACC
ACCGAAGGGCAGGCTGACCAAGCCACGCCCCCTGGCGGTCTAATTACCGA
AGGACAGCCTGACCAAGCCACGCCCCCCGGCGTTCTGACCACCGAAGGAC
AGCCTGACCAAGCCACGCCTCCTGGCGTTCTGCCCACCGAAGGGCAGCCT
GACCTAGCCACTCCCCCTGGCGTCCTTACCACCGCAGGACAGCCTGACCT
AGCCACTCCCCCTGGCGGTACAACAGGCATTGCAGCCTTGACAACTGATA
ACGGAGCTGAGACTGAGACTGAAGGAGACGAATACTCGGAGGCTACTGTT
GCTACCACTGGCGGCGGCTTGCTGGCCTCAATCATTCTGGCTCACGTTAT
CTTGGCTTTTTACGACATGTTCGCCTAGGAGACTTTGACCACCGTAGAAG
AGAATGGTGGCATAATAGTTACAGCACCTTCTGGTAGCCTGACCACCGAA
GGGCAGCCTGACCAAGCCACGGCCCCCGGCGTTCTGACCACCGAAGGGCA
GGCTGACCAAGCCACGCCCCCTGGCGGTCTAATTACCGAAGGACAGCCTG
ACCAAGCCACGCCCCCCGGCGTTCTGACCACCGAAGGACAGCCTGACCAA
GCCACGCCTCCTGGCGTTCTGCCCACCGAAGGGCAGCCTGACCTAGCCAC
TCCCCCTGGCGTCCTTACCACCGCAGGACAGCCTGACCTAGCCACTCCCC
CTGGCGGTACAACAGGCATTGCAGCCTTGACAACTGATAACGGAGCTGAG
ACTGAGACTGAAGGAGACGAATACTCGGAGGCTACTGTTGCTACCACTGG
CGGCGGCTTGCTGGCCTCAATCATTCTGGCTCACGTTATCTTGGCTTTTT
ACGACATGTTCGCCTAGGAGACTTTGACCACCGTAGAAGAGAATGGTGGC
ATAATAGTTACAGCACCTTCTGGTAGCCTGACCACCGAAGGGCAGCCTGA
CCAAGCCACGGCCCCCGGCGTTCTGACCACCGAAGGGCAGGCTGACCAAG
CCACGCCCCCTGGCGGTCTAATTACCGAAGGACAGCCTGACCAAGCCACG
CCCCCCGGCGTTCTGACCACCGAAGGACAGCCTGACCAAGCCACGCCTCC
TGGCGTTCTGCCCACCGAAGGGCAGCCTGACCTAGCCACTCCCCCTGGCG
TCCTTACCACCGCAGGACAGCCTGACCTAGCCACTCCCCCTGGCGGTACA
ACAGGCATTGCAGCCTTGACAACTGATAACGGAGCTGAGACTGAGACTGA
AGGAGACGAATACTCGGAGGCTACTGTTGCTACCACTGGCGGCGGCTTGC
TGGCCTCAATCATTCTGGCTCACGTTATCTTGGCTTTTTACGACATGTTC
GCCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000625 | genome | Sc0000625:63037..65186 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL82080_cuf0 |
| Biotype | protein_coding |
|
