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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL82003_cuf1 >transcript:BL82003_cuf1-protein ID=transcript:BL82003_cuf1-protein|Name=transcript:BL82003_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=115bp
MAVPRNTVAVFLVLAHLTAEITGQTATTRTTLQGNTTATTPAPVAAATTT
AASNGSAEPISDFGSGSGDVILDDRAGGSGEGGKATTTTQAHSLPVTTVA
NNSTSHANNTDATLT Run BLAST on NCBI mRNA from alignment at Sc0000839:5110..11467+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL82003_cuf1 ID=transcript:BL82003_cuf1|Name=transcript:BL82003_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=6358bp|location=Sequence derived from alignment at Sc0000839:5110..11467+ (Branchiostoma lanceolatum)
ATAAGGCTGTTGTGGCAACATTGCTGCGAACAGATAGAACAAGGTCGGCC
TTTCCCTCTGCAGCCAGGTTTTACCGAGCAAAACAAGCAGCTTCGGCACC
GAACACGCAGGCTTTAACGATTTGTTTGACTAGGATTTTCGTGTCGTCAT
CCATCATATACTCTGAGCCCAACGCCGGGTTGGAATGTAGAGGTGGGGTA
GCCAAGCTTTAGGTGTCACTCTCACCGACACCGCTTTGACACCGCGCCCG
AATTTGTACAGTACACTTTGGAAGATGGCAGTGCCCCGAAACACCGTGGC
TGTCTTTCTCGTGCTCGCGCATCTTACAGCGGAGATTACCGGGCAAACAG
CGACAACGCGGACAACATTACAAGGTCAGTAAGAATAAAGGCCTATACTC
CTAAGAATCAAACTTCGAGTATGACTTAGATCAAGGTTCCTCTTACTTTA
TGTCTTGCGATGCTACGGTTTGACGCGGCACAGTCATGAATGTGTCGTAC
ACAAAATTCGACTGCCTTGTGTCGAACCGGAAAAGGCTGTCCTAAGTTCT
TGTCCACGAAAGGGCCCTGTTATGGCCTCGCTGAAACTCTACCCTAAAAT
CTTACGAGGAATGCGACTTCGCCTTGTTTCATAATTTGTCCTGCACATTT
CTATCTTTATGTTTAATGCTCATGAAAGTTAATACTTAAGCTATATATCA
TTATTTCATTGATTAGTACTTTATTCTCTATCTGCTACGTAAAAGAACCC
AACACACTTATCGAGAAGAGTAGGGGTGACCCAGTGTGCTTGACCAAAAA
CACGAGCCGTAGCGAAGCCGCATTGCACTACTACTTCTAGCTAAGGAAAA
ATTGTTATGCTTCGTCCTCAGTCTGAGGTTCAACCGCTTTACCTTTACCT
ATACAGTAATAGACGGAACATGTGTTAAAGGCCAGTTACCGTTGATGTCT
TGTACGCTTCTTACATTGAACCTTCTACCATTTATTCTCTTTAGATTTAA
TCGTTATGTGTTACAGGCATTTTTGTCTGAGAAACTTTTTTTTCTTCTTT
CTTTTTAAGGTAAACTCATTTTCAAAGTAAACATGTACTGCTTACTATCG
CAGAGACGCATAAAAGTTTTGGCCTTGGGGAAAAAAGTAGTGGGGAAAAA
AGATAAAGCCTACAACTACCTTAGTTCTAGATTTCTGTCAACGTTTTGTC
GTGGTCAGTAATTTTGTTGTGTTGGTAACTCGGTTGTGTTCAATGGGGAA
AACGTTCATGCATCCTTACAAAACTGATTTGTTTAACGTTACAACATAGT
GCAATAAAAAGATAGTCTACAACTGCCTTAGTGCTAGATCTCATGCAACG
TTCTATTACGGTCGGTAACTTTGTTGTGTCGATAGTAATAACTCTTACGT
GTCTTTAACGTTGGACTCCCCACACCCGGCCTCCTGTGTATACTGGTGTC
AGGCAGCGTGACTATCGTTCGTGTCCAGCTTTACTCCGCCTGGCTAAACC
TGTTGGGTGCACGGTGGCCAGCAGTGCGGAGAATGAGGCTGAGAATGGAA
GGCCCTCAGGCTATGCGGACGACATCTATCATGTCCCGCAATCCTCAGCC
GTTTGGTCTACTGTAGTATATTTTGCGTATAGCTAACAATTGAAACGCAG
TACTTATTGTAAATGCAGAAATGTTCGCGGTGGTTTTATGTTTGCGGTTT
TCGCGGTTACCGTTTCACCGCGAACTTAAAACCACCGCGAACATTTTTGT
CCAAACTGAAGCAGTATGTGGCTATAGCGCTGCCGCAAACTTAAAACCAC
CGCAAACACTCCATCTTCGCCTTAGCGCGAAATAAAAACCATAGGAAGTT
AAAATGCATTTACAGTATTCAAAATTGTCGTTTCAAGAAAGCCTGAAGTA
GATGATCACAGTTTTATTGAACGGTTTGATCGGACTATCACAGCAAGGCA
CGAATATGAGAATGTATTCCTTGATCGACCGTCACCGAACCGTGAATTGA
AAAAGGCGAAATGCCATTCCGTTCAGTTTTGTTTCTCTCATAGTTTTTTC
ATGAAAACATGTTAGTAAATTAAAGGTACTTCGGATATGACATATTGATA
CAGCGCTGTTCGTTTGGAGAAATAAACAAACGCTCGATCTGGATATGCAT
TTTGAGCTTTTTCTGCAAAGTCAGAAGGTAAATTGGGACGTCAAAGGGTT
TTACCGGTTTATCCAAAGGATGGAAATGGAGTCAACGCTTCTTTATAAAT
TCTTCACCGTGACACACGCAATGAGCTCTGCTGTGGTTTTTCTAGCCTCT
TGTGCAGCAGTCTCTTACGATTTCTCCAGCCAAAGAACCTGGTCCCGGTA
TGTTAAAGATCGTGGGTCTAGAAAGCCTGTAAAGGAGGCTATGGTTCTTA
TCGTACGTGCCAAACCCGTGCATTTCAGGAAAAAAAAAACACAGAGTTAC
CGCCTTATATCTGCCCAACGAGTTTAAAGACATCACCCCTCCCCCCAAAA
GAGCACATATTCAAACGTCCAACCGTGACCAGTAATATACGTAATCCCTT
GGCCAGTATACAGATTGGGGATGTCACAGCAAAAAACACACAATAACACC
ATTGGGGCAGAACTATAAACATGGCTGAAATGCTTTGAATTAGACCAGTT
TTGGTTGAATGGCTAAAAGGCTGATGATGTTTCTTGTTGGCTGACCGAGT
TCCAATGTGAAGTGTTTGCACACTCAAGTGTGGTGTAATGGACACGACAT
TACGGTCAGTTGGGTTCAAAAAGGAACCCTACCATCATTCTCATCGACTT
GACATACACGCTGAAAGAATACGTTTCTATGTACATTTAACCTTCAATAA
ACAGTTTACTGGGCGCTTTCACCTGTAAGCCCAACGTATACAGAACTGGC
GAAGCGAAAACTGTCGTCAAGGCAGCGACGATTGTTGTTGTCACAGAGAC
TTATCGCGCTAATCTAAACCACCAAAATGATACTGGGAATCAAGCACGCT
ATATTGTACGGCGTACCGCACATATTGTTTCGCGGTAAACCAGCACTACA
TACTTGTACTTACATGATCCACAGAGTAGTTTGGAAGAGACTTCTATTGT
CAATCAGTGAAGCGTTTTCTCCGACAGTTGACTTACCCCATTCCACCGGG
ACGGCCCTCTCACCGTGGTCTCTCTGCGTCCTCAAATTCAACAGAGCACT
CAACGAATTTCATAGATAGAAAATTACTATTTTAAGCATTGTGTGTTTTG
TTGTTTTTTAAGTCATACTTTTACATTTTGCATGAAATTCCAATTATGAA
GTCAAGGTTAACACAAATCCGACTAAGTTCAGGTCGCAGCGAGAGCGCAG
CGAGAGCGCAGCGAGAGCGCAGCGAGAGCGCAGCGAGAGCGCAGCGAGAG
CGCAGCGAGAGCGCAGCGAGAGCGCAGCGAGAGCGCAGCGAGAGCGCAGC
GAGAGCGCAGCGAGAGCGCAGCGAGAGCGCAGCGAGAGCGCAGCGAGAGC
GCAGCGAGAGCGCAGCGAGAGCGCAGCGAGAGCGCAGCGAGAGCGCAGCG
AGAGCGCAGCGAGAGCGCAGCGAGAGCGCAGCGAGAGCGCAGCGAGAGCG
CAGCGAGAGCGCAGCGAGAGCGCAGCGAGAGCGCAGCGAGAGCGCAGCGA
GAGCGCAGCGAGNAAATTGGGGACACAGGAGGGGTAGTCTTGTATGTGTT
GTACAAAATCCGCCTGTCTTGCAACGTTATGACGAGAGATGTTGCCGTAT
ATCAATTGTCTGCGGTCGGCTAGCGCTCTGGCAAAACCCCATTGGAAATG
CTACAACAAAAATTTCGTACGACGAAAGTGACCGGAGCTTANGTGATCGG
AGCTTATAGTAAAAAGTTAGTACTCTCCAAGCAGAGTCGCTTGGTGACAT
AAAGAAAACGGTACGAAATAGAAAAGAAAAAACACCTAAGAAAAGACGTC
AAAAACGAGCCGGAGCCGAACCTCTGCTTTGAGGATTTATTTTTGATGAC
TCGTAGTCTAGCGTACACCTGTGCGTAATTAACAGATTACGTCATGGACT
TGTAAGGAAAGCCAGATCTTTGTCAATTAGCAACGCAGAAACAACAAAGT
GAATGGTGAAGTAGGTTGTGTAACCGCGTCCTCGTGCGATATAGGGCGGC
AATGCATCTAGAGGGGCAGTCCTATAGAATAACACTATACAGACGAAGCC
ACTTAATCGCACCTCGGATAAACGCACCTTCCATTTAATTGCACCGAATC
CCAATATCCAAAACCGGTTCCCATTCACTGCATTGTTAGTGACTCCGCAT
ATCTCCACCGCGCATGGTCGCCAATGCCGGATAACTGCACCATTTTTTTC
TTCTTCAAAAATCCTCGACAAGTTAACTGAAAACGTGTGCTAAAATCGGC
AAAACGCGGTACAAATGAGCCGATACCAGCCGGTGTAAAGGCGCAATACC
GCCAATATGTTTAAAACTGTTGAGTAACAAAAGAAGGTGGTCTCCATTGA
CAGTTACGTTGATAGGAATCGTATGGGAGGTCCCGGGCGGGTCACCCGTA
ATCAGTAACCAACTTTTAGCTTCAATTCCTAGTTTCATGGCGGTAACGTT
ACGTAATTTACGTAAATCGACAACTGCACTCTACGTAATCTAACACAGAA
ACTGTTATCCCATGAGTGGCATGACGATGTTTCAGAATGCCTCCCCCGTA
ACATAACGTGTGTTGTAATACGGTAGAGCGCATGAAAAAATGAAAGAATG
CAAATTAAAACAGGTTCGTAGTCATTTCTTTATTTTCGGCAAAGGGTCAA
TAAATAAAGTTAATAACTGAATAATTTCGTCTGTTTTCTTTGTGCTAGTG
TTTCTGACTAACAATACACCCCCTCACCCATGGTGGTGCGGTCCAGCTGG
GCATTTCGCATAATTGCACCAGCCGGATAATTGCACCAAAAACGCTGACA
AATGGGTGGTGCAGTTATGTGGATTCTACTGTATATTCCTTTACAAGTTA
GTTTGAAAACGGATATTAATCCTATTCACTTTAGTGGTGCATTATCTCAC
ACATCGTGTATGTGTGCCTAAGTGGAATAGCATTACCCAAGTACTACACG
TTGTTGCACAGGGAACACGACTGCAACAACACCAGCACCAGTGGCTGCTG
CGACCACAACGGCAGCTTCGAACGGTAGTGCAGAACCGATTTCCGACTTC
GGATCTGGATCTGGAGATGTGATTTTGGACGATCGTGCGGGGGGTAGCGG
TGAAGGAGGTAAGGGTCAAATAGAAGCTAGTCATGTGACGTCTTTGCTGT
GTCCGCCGCCATTCTATCATCCGCCTTTTTGCATTTCTGTGAACTGTAGC
TCGTGCATAATTTTATCAGGTTAGCGAATGACTGAATAGCAAGTTTGTTG
GGTTTTTTTTTATTCACAACTAACTATTTTACAAGAGCCGACGTTTCGAC
GACTGTCTGTCATCTTCATCAGAGCAATACTGTCTAGTTCACAGTGCACT
GAAGCTAGGTGTTACTGTTAACGATGCAATCACAAACGTAAAGTATTGTT
ACATTAGAGGATAATCTAACCAACAATAGTATCTTCTGATGTAACAAATT
ATATAGTTTACGTTTGGGACTGCATTGTTAGCAGTAACACCTAGCTACAG
TGCACTGTGAACTTGTCAGTATTGCCCTGATGAAGATGACAGACAGTCGT
CGAAACGTCAGGTCTTGTAAAATAGTTAGTTGTGAATAAAAGAACCTTGC
TATTCTGTAGCTCCGGTGTTCAAGGACTCTTCTGCCACTCATATATCCAC
TTCTAGCTAGCTGTTTGAAGTTCGAAGGAAAGAGGTATACACGGATATCG
TAAACCTTGCCGATATTACATAAGATACTGTGCAAGTACGACTCACTAGA
TGCAAATAAGAACCACAACATGGCAGATAGTGTTCAACATCATCTTTATT
GCAGAAGTATATCCACAAGACACGCTTTTAGAATCAACCACGTACAAGAT
GAATGAGTTAAGAACCTAGGCCGACCCCTTAGTCAGATAAATAAAATCTG
GAGGGCGCAAGGTAACAATTATGTGCACCCCGTCCCGACTTCCGATAGTA
TATTATGCATACTGTATTGCACAAGTATAAAGATATTTGCTGTATTGCAC
TGTCGTTGATACATAATAATACTATTGCTCTTAAATGTAAGTAGATCTCA
TCGGCTGGAAAACATATTTCTCTTTGCTGAAACACAATCTTGAAAGATGC
ATTTTCGATATTGCAGCGACAACAACAACACAGGCTCACAGCTTACCTGT
GACAACAGTGGCCAACAACTCCACGTCACATGCTAACAACACAGATGCAA
CTCTAACC Coding sequence (CDS) from alignment at Sc0000839:5110..11467+ >transcript:BL82003_cuf1 ID=transcript:BL82003_cuf1|Name=transcript:BL82003_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1035bp|location=Sequence derived from alignment at Sc0000839:5110..11467+ (Branchiostoma lanceolatum)
ATGGCAGTGCCCCGAAACACCGTGGCTGTCTTTCTCGTGCTCGCGCATCT
TACAGCGGAGATTACCGGGCAAACAGCGACAACGCGGACAACATTACAAG
GGAACACGACTGCAACAACACCAGCACCAGTGGCTGCTGCGACCACAACG
GCAGCTTCGAACGGTAGTGCAGAACCGATTTCCGACTTCGGATCTGGATC
TGGAGATGTGATTTTGGACGATCGTGCGGGGGGTAGCGGTGAAGGAGGTA
AGGCGACAACAACAACACAGGCTCACAGCTTACCTGTGACAACAGTGGCC
AACAACTCCACGTCACATGCTAACAACACAGATGCAACTCTAACCATGGC
AGTGCCCCGAAACACCGTGGCTGTCTTTCTCGTGCTCGCGCATCTTACAG
CGGAGATTACCGGGCAAACAGCGACAACGCGGACAACATTACAAGGGAAC
ACGACTGCAACAACACCAGCACCAGTGGCTGCTGCGACCACAACGGCAGC
TTCGAACGGTAGTGCAGAACCGATTTCCGACTTCGGATCTGGATCTGGAG
ATGTGATTTTGGACGATCGTGCGGGGGGTAGCGGTGAAGGAGGTAAGGCG
ACAACAACAACACAGGCTCACAGCTTACCTGTGACAACAGTGGCCAACAA
CTCCACGTCACATGCTAACAACACAGATGCAACTCTAACCATGGCAGTGC
CCCGAAACACCGTGGCTGTCTTTCTCGTGCTCGCGCATCTTACAGCGGAG
ATTACCGGGCAAACAGCGACAACGCGGACAACATTACAAGGGAACACGAC
TGCAACAACACCAGCACCAGTGGCTGCTGCGACCACAACGGCAGCTTCGA
ACGGTAGTGCAGAACCGATTTCCGACTTCGGATCTGGATCTGGAGATGTG
ATTTTGGACGATCGTGCGGGGGGTAGCGGTGAAGGAGGTAAGGCGACAAC
AACAACACAGGCTCACAGCTTACCTGTGACAACAGTGGCCAACAACTCCA
CGTCACATGCTAACAACACAGATGCAACTCTAACC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000839 | genome | Sc0000839:5110..11467 + |
Properties
| Property Name | Value |
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| Transcript id | BL82003_cuf1 |
| Biotype | protein_coding |
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