transcript:BL81833_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL81833_cuf0
Unique Nametranscript:BL81833_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL81833_cuf0

>transcript:BL81833_cuf0-protein ID=transcript:BL81833_cuf0-protein|Name=transcript:BL81833_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=147bp
MLKCDNRLVLPLKKLFNFVLQSGNFPHQWNQNILVPIYKSGNSSDPSNYR
GIAISSCVGKLFSLILSNRLQHFLEDSNLLTPFQSGFRKNFRTSDNIFVL
KTIVDKQLSESRGKLYACFVDFKKAFDSVWRHGLXFILQDAIVRYRW
Run BLAST on NCBI

mRNA from alignment at Sc0000250:337904..338895+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL81833_cuf0 ID=transcript:BL81833_cuf0|Name=transcript:BL81833_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=992bp|location=Sequence derived from alignment at Sc0000250:337904..338895+ (Branchiostoma lanceolatum)
CATAATCAAGATGAAAATAATAACATATGTCCTGAAGAGTGGAAAACCCA CTTCGAAAATCTGAACGACCCTGTTGGAACTAATCAATCTGATGCAGAAT TCCACCAACATATCTCGCAGGAAAGACCAGACCTTTAGACGATAAACGAC AACACTATAATTCACAATAAAGACAATGAATATACAGAAAATATTATCAA AACCCTTGAAAGTAAAACAGAAAATCCGCTAGATTTTGACATTTCAGAGG AGGAAATCATGGCAGGACTAGGTAAGCTAAAAAGCAGCAAGGCTTCTGGC ACAGATTCGATTATAAACGAGATGCTAAAATGTGATAACAGACTCGTCCT ACCACTAAAAAAACTGTTCAATTTCGTCCTCCAGTCTGGTAACTTTCCCC ATCAGTGGAATCAAANGCACAGATTAGATTATAAACGAGATGCTAAAATG TGATAACAGACTCGTCCTACCACTAAAAAAACTGTTCAATTTCGTCCTCC AGTCTGGTAACTTTCCCCATCAGTGGAATCAAAACATCCTTGTCCCCATA TACAAAAGCGGAAATTCATCAGACCCATCAAACTATAGAGGAATTGCAAT CTCTAGTTGCGTGGGGAAACTGTTCTCTCTCATTCTAAGCAATAGACTAC AACACTTTCTAGAAGACAGCAATTTGTTAACCCCATTCCAATCTGGCTTT AGAAAGAATTTTAGGACAAGTGACAATATCTTTGTACTGAAAACTATAGT CGATAAACAGCTCTCTGAATCTCGTGGGAAGCTATACGCCTGCTTTGTAG ATTTCAAAAAAGCTTTTGATTCCGTTTGGAGACATGGTTTATNGTTTATA TTACAAGATGCTATCGTTAGGTATAGGTGGTAAGTTTTTCCAAATCATAC AATCCATATATTCCAACATAAAATACTGTGTCAAAACACCTAATGGTCTT TCAGACTACTTTCAGTCCACTTGCGGGGTACGTCAAGGGTGC

Coding sequence (CDS) from alignment at Sc0000250:337904..338895+

>transcript:BL81833_cuf0 ID=transcript:BL81833_cuf0|Name=transcript:BL81833_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=444bp|location=Sequence derived from alignment at Sc0000250:337904..338895+ (Branchiostoma lanceolatum)
ATGCTAAAATGTGATAACAGACTCGTCCTACCACTAAAAAAACTGTTCAA
TTTCGTCCTCCAGTCTGGTAACTTTCCCCATCAGTGGAATCAAAACATCC
TTGTCCCCATATACAAAAGCGGAAATTCATCAGACCCATCAAACTATAGA
GGAATTGCAATCTCTAGTTGCGTGGGGAAACTGTTCTCTCTCATTCTAAG
CAATAGACTACAACACTTTCTAGAAGACAGCAATTTGTTAACCCCATTCC
AATCTGGCTTTAGAAAGAATTTTAGGACAAGTGACAATATCTTTGTACTG
AAAACTATAGTCGATAAACAGCTCTCTGAATCTCGTGGGAAGCTATACGC
CTGCTTTGTAGATTTCAAAAAAGCTTTTGATTCCGTTTGGAGACATGGTT
TATNGTTTATATTACAAGATGCTATCGTTAGGTATAGGTGGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL81833gene:BL81833Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL81833_cuf0-E1BL81833_cuf0-E1-1564476830-409189Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL81833_cuf0transcript:BL81833_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000250genomeSc0000250:337904..338895 +
Properties
Property NameValue
Transcript idBL81833_cuf0
Biotypeprotein_coding