transcript:BL81797_cuf2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL81797_cuf2
Unique Nametranscript:BL81797_cuf2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL81797_cuf2

>transcript:BL81797_cuf2-protein ID=transcript:BL81797_cuf2-protein|Name=transcript:BL81797_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=153bp
MSDVCKLLSEMSQGNVKDKNSYWVILGLLCCMVCTCTASVDDCPENQYYG
ERWCIPCTICQDLNKELLQPCLPQSDAVCGDCLPGYYLDQRYCHPCKYAP
SDHRYCQLWLASQTTAKPAAGSTISPSTQTQHSVAQTTPPPLTGQASSKP
TSK
Run BLAST on NCBI

mRNA from alignment at Sc0000272:20303..23692-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL81797_cuf2 ID=transcript:BL81797_cuf2|Name=transcript:BL81797_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=3390bp|location=Sequence derived from alignment at Sc0000272:20303..23692- (Branchiostoma lanceolatum)
CAGTGACATAGCAGCTTTACTTCCGAATTAACCGATAAGGCATATCCGGA
ATAAACAAATGTCATAACTAGTAATTGAGCAAATATCATATTGTTTTAAA
TGGATGTAGTTAGTCACGAGAGTAATCATTTTACTACAGTATATACACCT
GGAAGGACGGTAGCGTGAGCACACCTAAATCATGTCAGATGTCTGCAAGC
TGTTGTCAGAAATGTCACAGTAAGTTCTTTATGTTATTTCATAAAGTGAT
CATATCATGTATAAAAAAACACACAAATGCAACCTACCAGCCAAAATACC
AACCAACCTACCTATGTATATATATTATCAACATGGTTTTCAAACCTTTT
GCTCGATTAACTCAGGCCTGTCGCTTTGCAATTTTGCGGGCCGGTTAGGG
TGTGGGGTGGGGAAAGCTACTCCGGCTGGGTTTTGGGGCTTTAATTAGAC
ATTTTTCTCAGATGGGCGTTCATTTGAGATAAATGTCCTAGGACAACTCC
TTTGACAAACACTCATGATCGTTACGTGTCTTACATTTGGGGTTCCCCGT
CGTCAGCATCTAAACAAGGCGATGAGGTCAGCCTCTGGAACGTTCTCCGA
CAATATGGACTTTAAGCCGGATATTGGCCTTTTTCACGGACTCCTGAACA
GCCAACACCTGAGTTACATGTCGACAAGAAGTAGTAGTTCTATTTGAGCT
TTGCAAATAGTTGCGCCATACATGCTTTCTATTTAAAAAGCATTTCAGAG
TAAAACCATATGCATCTTCATACAGACCCTGTCCATTCAGACTGCTTCAT
TTCTTAGATGAAGTTTTTAATGACCAAGTTGGATTGTCATTATGATAAAA
TATAGTTGAGCAACCCCTCCCCAACCCTAACGCTGTACGATCACATTCAT
CTACCGGGAAACCTTCTTTTCAGAGGGAATGTCAAAGACAAGAACAGCTA
TTGGGTCATCCTTGGATTGCTCTGCTGCATGGTACGGACTTTTCTTTTTC
TAACACGTTACATCGAGTGGGAAAATTCACATTTTCTTCGCCAATGTAAA
CTGTATGATTAAAACTTACACACATTCTCCTATCTCTAGGGCGTTTGTCT
TCTTCCATGCGGCATTATGATGGTCTCTGTGGAGCCCACCAGACTACATG
AATCATGATGTAGTCTTGCGGGCTCCACAGAGACCATCTGCAGAGTCTAT
GGTGTATGTGAAAAAAAAAAACATAACCGTGATTTAATTCCACAATAGCG
GGGAGTAACAGGTATCCAAATAAAGATATACAACGTCAATCTACAGGTAT
GTACATGTACAGCAAGTGTAGATGACTGCCCAGAAAACCAGTACTACGGG
GAGCGGTGGTGCATACCCTGTACGATCTGCCAGGACCTGAACAAGGAACT
TCTGCAGCCCTGCCTCCCGCAGTCCGATGCTGTCTGTGGAGACTGCTTGC
CAGGGTACGTCTCATGACATAGAAAAGTGTTAGTTTGTTCGCTTGCTTGT
CTCTGTGTATGTGTTTGTGCGTGTACGTGTGTATGTGTGTGTGTACGTGT
GTGTGTGTGTGTGTGTGTACGTGTACGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGAGTATGTGTGTTTGAAAGATGTGTTACAGTTACAAAT
GCAATAACGGATATTCATCAGAATTCCATGTTTTTTTTTTAGATACTACC
TGGACCAACGCTATTGCCATCCCTGTAAGTACGCACCATCAGACCACAGG
TACTGTCAGTTGTGGCTGGCCTCCCAGACTACTGCAAAGCCCGCTGCAGG
TTCTACCATTTCACCTAGTACTCAAACACAGCATTCTGTTGCACAAACAA
CGCCGCCACCGTTAACTGGACAGGCATCAAGTAAGCCAACAAGTAAGTAG
AAGAGAAAGTTATTTTCCCCATGGAATGGAGAAAGACATTATCCATGTTT
ACTTCGGTCTGCAGTGTCTGCGTAATAGACTACATAATCATGTACAAACA
TGACTCTGCTCGGCCACAGTAAAACGTATCAGATATATTGCTGTACTGAG
AGCAATATACATCAGTAAATCTCATCCGTTATGTTTGGCACATAGCACTC
ACATTCCACGCAAAGGAGACTTCTGCGAATATATGTTCGTTTGCCGGTGC
CTTATCAAAGAGAACCCAGCCCTAGGATGGCTTGCAAAAGGACAGGCAAT
TCATGGTGGTTCCTTGCTATCATTTTTCAGATGACATTCACATCGTTTCC
ATGCCAACCACAAATGACATAAACAACGTTTCCATGCCAACCAGCGCCAA
TCCGTCAAAACAAAAACAAGGTTAGAACTTGTTCATCTTACATGTTGTTG
ACATGTCTACAAAATTAACGTGTGTTGATTGACTTGTAGATGTGAAAATA
TGTGTGAAAATGTACAAAGTTCGCATGTGAACTGTTTACATTCTAAATGG
AAAAATGATTTACCTTTGTGTTTGTATAATTTTTCGTAATGTCTAGATAT
ACTCTGATCAAATACGTCGTTTTGCATGTGGTGGTTCGGCGGTTGTTTGG
TGATCCCGGGAATAAAAGAGATCACCGTTCAACCCATGTATTTGCTCCGC
AGGTCCCCCTCTTCGCCCTGGTCCAGTCGCAGCTATCGTTATTGTTCCGT
CATTGGCGGTGCTGACGCTCATCGGCGCCTTGGTTTGGAGAATCAAACAC
AAGAAGAAGGAAGGTAATCACAAACCTTTCTAGCCCCCCTAGCCTGTATA
ATGTAATACGATGACATAAAATACTAACCTAACATGACGATTTTATGACT
ACTTTATGAACTTGACTCATTGACTGGTGGATATGTGCGTTTATTATACG
GTAACGCTGATATATAACCATATCATTCCACAAATTAAAAATAAATAATC
AACTGCTTGTTGGAGACGAATTCCTAAATGATAGATGATGGTAAACCTCC
TATTTAGAAACTCAGTTTGTGTTTTGTTTTGTTTCTTGATAGCAACTGCT
GTTCAAGCAACGCCGGACGAAGACCAGCAAGTCCACAGCTACCCCTGACC
AGCAGTTCCAGCTTTCTATGCTACAAATATTACATCAATACTATAAATTG
TGTTTCACCATGACTCATTTTGAGGATAAAACGAGGGTAGACAAAGCGAT
GTAAAATGGAAATGTTTGCTTTAGGGTTAGTGTTGGAGAATGTCTTTATA
GCTAATAGTTTGCACGACCATCCACCCATTTAACTGTGAAGTTTTCAAAT
TTCTTGCACATGTAATTTGAAATATACCAAAGGCATTTTTCTTATACACC
TTTTACAATATCCCTGAGACATTTTGGCCTCATAAGCTTTTACTGGTTTG
CTTCTATGTAACTTTCATCAAATTATGTGACTCAAATAAA

Coding sequence (CDS) from alignment at Sc0000272:20303..23692-

>transcript:BL81797_cuf2 ID=transcript:BL81797_cuf2|Name=transcript:BL81797_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1848bp|location=Sequence derived from alignment at Sc0000272:20303..23692- (Branchiostoma lanceolatum)
ATGTCAGATGTCTGCAAGCTGTTGTCAGAAATGTCACAAGGGAATGTCAA
AGACAAGAACAGCTATTGGGTCATCCTTGGATTGCTCTGCTGCATGGTAT
GTACATGTACAGCAAGTGTAGATGACTGCCCAGAAAACCAGTACTACGGG
GAGCGGTGGTGCATACCCTGTACGATCTGCCAGGACCTGAACAAGGAACT
TCTGCAGCCCTGCCTCCCGCAGTCCGATGCTGTCTGTGGAGACTGCTTGC
CAGGATACTACCTGGACCAACGCTATTGCCATCCCTGTAAGTACGCACCA
TCAGACCACAGGTACTGTCAGTTGTGGCTGGCCTCCCAGACTACTGCAAA
GCCCGCTGCAGGTTCTACCATTTCACCTAGTACTCAAACACAGCATTCTG
TTGCACAAACAACGCCGCCACCGTTAACTGGACAGGCATCAAGTAAGCCA
ACAAGTAAGTAGATGTCAGATGTCTGCAAGCTGTTGTCAGAAATGTCACA
AGGGAATGTCAAAGACAAGAACAGCTATTGGGTCATCCTTGGATTGCTCT
GCTGCATGGTATGTACATGTACAGCAAGTGTAGATGACTGCCCAGAAAAC
CAGTACTACGGGGAGCGGTGGTGCATACCCTGTACGATCTGCCAGGACCT
GAACAAGGAACTTCTGCAGCCCTGCCTCCCGCAGTCCGATGCTGTCTGTG
GAGACTGCTTGCCAGGATACTACCTGGACCAACGCTATTGCCATCCCTGT
AAGTACGCACCATCAGACCACAGGTACTGTCAGTTGTGGCTGGCCTCCCA
GACTACTGCAAAGCCCGCTGCAGGTTCTACCATTTCACCTAGTACTCAAA
CACAGCATTCTGTTGCACAAACAACGCCGCCACCGTTAACTGGACAGGCA
TCAAGTAAGCCAACAAGTAAGTAGATGTCAGATGTCTGCAAGCTGTTGTC
AGAAATGTCACAAGGGAATGTCAAAGACAAGAACAGCTATTGGGTCATCC
TTGGATTGCTCTGCTGCATGGTATGTACATGTACAGCAAGTGTAGATGAC
TGCCCAGAAAACCAGTACTACGGGGAGCGGTGGTGCATACCCTGTACGAT
CTGCCAGGACCTGAACAAGGAACTTCTGCAGCCCTGCCTCCCGCAGTCCG
ATGCTGTCTGTGGAGACTGCTTGCCAGGATACTACCTGGACCAACGCTAT
TGCCATCCCTGTAAGTACGCACCATCAGACCACAGGTACTGTCAGTTGTG
GCTGGCCTCCCAGACTACTGCAAAGCCCGCTGCAGGTTCTACCATTTCAC
CTAGTACTCAAACACAGCATTCTGTTGCACAAACAACGCCGCCACCGTTA
ACTGGACAGGCATCAAGTAAGCCAACAAGTAAGTAGATGTCAGATGTCTG
CAAGCTGTTGTCAGAAATGTCACAAGGGAATGTCAAAGACAAGAACAGCT
ATTGGGTCATCCTTGGATTGCTCTGCTGCATGGTATGTACATGTACAGCA
AGTGTAGATGACTGCCCAGAAAACCAGTACTACGGGGAGCGGTGGTGCAT
ACCCTGTACGATCTGCCAGGACCTGAACAAGGAACTTCTGCAGCCCTGCC
TCCCGCAGTCCGATGCTGTCTGTGGAGACTGCTTGCCAGGATACTACCTG
GACCAACGCTATTGCCATCCCTGTAAGTACGCACCATCAGACCACAGGTA
CTGTCAGTTGTGGCTGGCCTCCCAGACTACTGCAAAGCCCGCTGCAGGTT
CTACCATTTCACCTAGTACTCAAACACAGCATTCTGTTGCACAAACAACG
CCGCCACCGTTAACTGGACAGGCATCAAGTAAGCCAACAAGTAAGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL81797gene:BL81797Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL81797_cuf2transcript:BL81797_cuf2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL81797_cuf2-E1BL81797_cuf2-E1-1564476830-417404Branchiostoma lanceolatumexon
BL81797_cuf2-E2BL81797_cuf2-E2-1564476830-417401Branchiostoma lanceolatumexon
BL81797_cuf2-E3BL81797_cuf2-E3-1564476830-417399Branchiostoma lanceolatumexon
BL81797_cuf2-E4BL81797_cuf2-E4-1564476830-417397Branchiostoma lanceolatumexon
BL81797_cuf2-E5BL81797_cuf2-E5-1564476830-417394Branchiostoma lanceolatumexon
BL81797_cuf2-E6BL81797_cuf2-E6-1564476830-417392Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000272genomeSc0000272:20303..23692 -
Properties
Property NameValue
Transcript idBL81797_cuf2
Biotypeprotein_coding