transcript:BL81442_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL81442_cuf0
Unique Nametranscript:BL81442_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL81442_cuf0

>transcript:BL81442_cuf0-protein ID=transcript:BL81442_cuf0-protein|Name=transcript:BL81442_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=212bp
MKRSVFAIPVFAIVVVYAYVIVNMNKTKTRGLNIGHLNVCSLRNKINDLA
QLMNQNQIHIMAVTETHLDNTITDGQLCIEGYSFVRKDRNGRGGGVAIYT
TDMIVTNIREDLMLPSTEVLWIQAHLAHVRPFLVAVLYRPPNSNAGYMDN
LELMLDRATCEQQEIFILGDFNIDWIQNSHTSKRLKDMPESYSMKQLVAV
PTRAVNRGQTVS
Run BLAST on NCBI

mRNA from alignment at Sc0000018:1389713..1390559-

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL81442_cuf0 ID=transcript:BL81442_cuf0|Name=transcript:BL81442_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=847bp|location=Sequence derived from alignment at Sc0000018:1389713..1390559- (Branchiostoma lanceolatum)
ATTCGAGCTGATGATACATTTAGAATGACTTACTTTAGACGGATGCTAGC
TTATTTAGCAATGTGTATATAGTTGTGTAACCATTTGATTTCTGCTAAGT
AATATCTATGTTATGTAAATTAGGCTACGGGTAGATTGTTGTTGTAAAAG
GAGCAGAGTAAGCTAATTATATTAGGTTGGTTGGAAAGTATAATTACGAA
AGCTAGGAGAAATGAAGCGTTCTGTATTTGCTATCCCAGTATTTGCTATT
GTTGTTGTGTATGCGTATGTAATTGTAAATATGAACAAAACAAAGACGCG
AGGTTTAAACATAGGCCACCTTAATGTGTGCAGTCTACGCAATAAGATCA
ATGACTTAGCCCAATTGATGAACCAAAACCAGATACATATAATGGCTGTA
ACAGAAACACACCTAGACAATACCATAACAGATGGACAACTTTGTATAGA
AGGTTACAGTTTCGTAAGAAAGGATAGAAATGGCAGGGGCGGGGGTGTAG
CAATTTATACAACAGACATGATAGTTACCAATATCAGAGAGGATCTTATG
CTCCCCTCGACAGAGGTACTTTGGATACAAGCCCATTTAGCCCATGTTAG
ACCTTTTCTAGTTGCAGTTTTGTACAGACCACCAAACTCAAATGCTGGTT
ATATGGATAACTTGGAACTGATGTTAGATAGAGCCACATGTGAGCAACAG
GAAATATTTATTTTGGGCGATTTCAATATTGACTGGATTCAGAACTCACA
TACGTCGAAGAGACTGAAGGACATGCCAGAAAGTTACAGTATGAAACAAC
TAGTAGCTGTACCCACAAGGGCTGTAAACAGAGGTCAGACAGTGTCA

Coding sequence (CDS) from alignment at Sc0000018:1389713..1390559-

>transcript:BL81442_cuf0 ID=transcript:BL81442_cuf0|Name=transcript:BL81442_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=636bp|location=Sequence derived from alignment at Sc0000018:1389713..1390559- (Branchiostoma lanceolatum)
ATGAAGCGTTCTGTATTTGCTATCCCAGTATTTGCTATTGTTGTTGTGTA
TGCGTATGTAATTGTAAATATGAACAAAACAAAGACGCGAGGTTTAAACA
TAGGCCACCTTAATGTGTGCAGTCTACGCAATAAGATCAATGACTTAGCC
CAATTGATGAACCAAAACCAGATACATATAATGGCTGTAACAGAAACACA
CCTAGACAATACCATAACAGATGGACAACTTTGTATAGAAGGTTACAGTT
TCGTAAGAAAGGATAGAAATGGCAGGGGCGGGGGTGTAGCAATTTATACA
ACAGACATGATAGTTACCAATATCAGAGAGGATCTTATGCTCCCCTCGAC
AGAGGTACTTTGGATACAAGCCCATTTAGCCCATGTTAGACCTTTTCTAG
TTGCAGTTTTGTACAGACCACCAAACTCAAATGCTGGTTATATGGATAAC
TTGGAACTGATGTTAGATAGAGCCACATGTGAGCAACAGGAAATATTTAT
TTTGGGCGATTTCAATATTGACTGGATTCAGAACTCACATACGTCGAAGA
GACTGAAGGACATGCCAGAAAGTTACAGTATGAAACAACTAGTAGCTGTA
CCCACAAGGGCTGTAAACAGAGGTCAGACAGTGTCA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL81442gene:BL81442Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL81442_cuf0-E1BL81442_cuf0-E1-1564476830-137586Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL81442_cuf0transcript:BL81442_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000018genomeSc0000018:1389713..1390559 -
Properties
Property NameValue
Transcript idBL81442_cuf0
Biotypeprotein_coding