transcript:BL81260_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL81260_cuf0
Unique Nametranscript:BL81260_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL81260_cuf0

>transcript:BL81260_cuf0-protein ID=transcript:BL81260_cuf0-protein|Name=transcript:BL81260_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=148bp
ASERCDNSSVVENHPFDRSSDSPASAPVLDTSHRSADGNVSDNTANHANT
PASTDSSQQEPIDASKTTSEATGEEPRSENSVVVFTPRRRPIHVPRNIQL
LAQVNPIFLPVPGTHYFQIATDGSERAVKFVKVIVAAKRFVAAARQYA
Run BLAST on NCBI

mRNA from alignment at Sc0000101:90397..91517-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL81260_cuf0 ID=transcript:BL81260_cuf0|Name=transcript:BL81260_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1121bp|location=Sequence derived from alignment at Sc0000101:90397..91517- (Branchiostoma lanceolatum)
AGCATCTGAGAGATGCGACAACTCCTCAGTCGTCGAAAACCACCCATTCG
ATCGGTCAAGTGATTCCCCTGCTAGTGCCCCAGTACTGGACACGTCCCAC
CGAAGTGCGGACGGGAACGTTAGTGACAACACTGCAAACCACGCCAACAC
CCCAGCCTCGACCGATTCGTCCCAACAGGAGCCGATCGACGCTTCAAAGA
CTACCAGTGAGGCGACTGGAGAGGAGCCCAGGTCAGAAAACAGTGTTGTG
GTGTTCACCCCAAGACGACGTCCCATCCACGTGCCAAGAAACATCCAGTT
GTTGGCCCAAGTGAACCCAATATTCCTACCGGTCCCGGGGACACACTACT
TTCAGATAGCAACGGACGGCAGCGAAAGAGCCGTGAAGTTTGTTAAAGTA
ATCGTAGCCGCCAAGCGATTCGTGGCTGCCGCTAGACAGTATGCGTAGAT
TCGTCAGCTTCTTTGTTTTCCCTATACTGGAAATTATTAAAAATGAAAAG
TTTAAAAAAATGAAATAATCATATGAACCGTTTTGGTAGGGTTAGCTGAG
TATTGAACAAAAAGTTCAAGTTTCTTCTTTGATATATTACCGTTCTATAG
TGTTTACGTATGTCCAGTATATAACGTTACATGTATGTTGTAACGTTATC
ACTTGGGTCTGACCACGGAACATCATTTTTATGATCTTTTATGCAATGTC
TGCCATACAATCGGTCTACTGGCGTCTAGCACGCTTAGCCATCTACCCCA
TAAAGGTAGTCCTATGGCACCACAATGTATTCTTTATGGACTTAGGTAAC
ATTAGTTTTTATGTGCTCCACAGCACCAACAAAGTGGTCAGTGGCTTATT
TAACAATACACCAGAGCTTTTCATGTTCCTTTTATAACGCTTCACAATTT
ACTTTGAACATGTGGATATAGAAATCTTCTCATTTTTAGTAACTTAAGGA
TTCAGGATGTGTTAAACAAATAGTCATATTTAGCCTTTTGTACATCTACC
TCTCCAGCCTCAAGTTAAGACTGACAAATATAATACACACGTCAAGTATC
TTTTGCTAAGTAGTTTGTAGGAAAAGCAAGAGTCCACAGTAATATTGTTC
TCATATATCTTTGCTGTCGTT

Coding sequence (CDS) from alignment at Sc0000101:90397..91517-

>transcript:BL81260_cuf0 ID=transcript:BL81260_cuf0|Name=transcript:BL81260_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=447bp|location=Sequence derived from alignment at Sc0000101:90397..91517- (Branchiostoma lanceolatum)
GCATCTGAGAGATGCGACAACTCCTCAGTCGTCGAAAACCACCCATTCGA
TCGGTCAAGTGATTCCCCTGCTAGTGCCCCAGTACTGGACACGTCCCACC
GAAGTGCGGACGGGAACGTTAGTGACAACACTGCAAACCACGCCAACACC
CCAGCCTCGACCGATTCGTCCCAACAGGAGCCGATCGACGCTTCAAAGAC
TACCAGTGAGGCGACTGGAGAGGAGCCCAGGTCAGAAAACAGTGTTGTGG
TGTTCACCCCAAGACGACGTCCCATCCACGTGCCAAGAAACATCCAGTTG
TTGGCCCAAGTGAACCCAATATTCCTACCGGTCCCGGGGACACACTACTT
TCAGATAGCAACGGACGGCAGCGAAAGAGCCGTGAAGTTTGTTAAAGTAA
TCGTAGCCGCCAAGCGATTCGTGGCTGCCGCTAGACAGTATGCGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL81260gene:BL81260Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL81260_cuf0-E1BL81260_cuf0-E1-1564476830-302042Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL81260_cuf0transcript:BL81260_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000101genomeSc0000101:90397..91517 -
Properties
Property NameValue
Transcript idBL81260_cuf0
Biotypeprotein_coding