transcript:BL80678_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL80678_cuf0
Unique Nametranscript:BL80678_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL80678_cuf0

>transcript:BL80678_cuf0-protein ID=transcript:BL80678_cuf0-protein|Name=transcript:BL80678_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=148bp
SGHLSETQKVGLISLLLKQDATGQDKEPTNLKNWRPLTLLNCDVRILSKC
IGLRMKNSMPHLISYDQTGFLQGRNIGDSIRRILEIMEFYDTHEKPGLLF
IADFEKAFDKIRRDFILKVLDYVGFGRSLIQWINVLYQDISSKVINYG
Run BLAST on NCBI

mRNA from alignment at xpSc0039704:44064..44509+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL80678_cuf0 ID=transcript:BL80678_cuf0|Name=transcript:BL80678_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=446bp|location=Sequence derived from alignment at xpSc0039704:44064..44509+ (Branchiostoma lanceolatum)
CTCAGGCCATCTTTCTGAAACTCAAAAAGTCGGACTAATTTCATTGTTAC
TGAAACAGGATGCCACAGGACAGGACAAAGAACCCACAAATCTAAAAAAT
TGGCGTCCACTAACTTTATTAAACTGTGATGTTCGAATATTATCGAAATG
TATCGGCCTGCGCATGAAAAATAGTATGCCACATTTGATTTCATATGACC
AAACAGGTTTTTTGCAAGGGAGAAATATTGGGGATAGTATAAGAAGAATA
CTGGAAATTATGGAATTTTATGACACACATGAAAAACCAGGGTTACTCTT
TATTGCAGATTTCGAGAAGGCCTTTGACAAGATTAGAAGGGATTTCATTT
TGAAAGTACTAGATTATGTTGGCTTTGGAAGATCATTGATACAATGGATA
AATGTGTTATATCAAGATATTTCGAGTAAAGTTATCAACTATGGAT

Coding sequence (CDS) from alignment at xpSc0039704:44064..44509+

>transcript:BL80678_cuf0 ID=transcript:BL80678_cuf0|Name=transcript:BL80678_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=444bp|location=Sequence derived from alignment at xpSc0039704:44064..44509+ (Branchiostoma lanceolatum)
TCAGGCCATCTTTCTGAAACTCAAAAAGTCGGACTAATTTCATTGTTACT
GAAACAGGATGCCACAGGACAGGACAAAGAACCCACAAATCTAAAAAATT
GGCGTCCACTAACTTTATTAAACTGTGATGTTCGAATATTATCGAAATGT
ATCGGCCTGCGCATGAAAAATAGTATGCCACATTTGATTTCATATGACCA
AACAGGTTTTTTGCAAGGGAGAAATATTGGGGATAGTATAAGAAGAATAC
TGGAAATTATGGAATTTTATGACACACATGAAAAACCAGGGTTACTCTTT
ATTGCAGATTTCGAGAAGGCCTTTGACAAGATTAGAAGGGATTTCATTTT
GAAAGTACTAGATTATGTTGGCTTTGGAAGATCATTGATACAATGGATAA
ATGTGTTATATCAAGATATTTCGAGTAAAGTTATCAACTATGGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL80678gene:BL80678Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL80678_cuf0-E1BL80678_cuf0-E1-1564476830-554727Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL80678_cuf0transcript:BL80678_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xpSc0039704genomexpSc0039704:44064..44509 +
Properties
Property NameValue
Transcript idBL80678_cuf0
Biotypeprotein_coding