transcript:BL78897_cuf2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL78897_cuf2
Unique Nametranscript:BL78897_cuf2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL78897_cuf2

>transcript:BL78897_cuf2-protein ID=transcript:BL78897_cuf2-protein|Name=transcript:BL78897_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=148bp
FKMAEADEQVDRGGCGDCGKTQKPKRRLPEWMKDIVLDKDHTKKKRKQGG
PQKGHTPLVLNLPVLKFIGNVVYCYQTGDCSFMCEDIMSNTTDERSCVLG
FDIEWPVTYTAGKEEKTALLQLCPSHNKCYLFHLSCMAGMHINVFLVD
Run BLAST on NCBI

mRNA from alignment at Sc0000000:3989249..3992937+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL78897_cuf2 ID=transcript:BL78897_cuf2|Name=transcript:BL78897_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=3689bp|location=Sequence derived from alignment at Sc0000000:3989249..3992937+ (Branchiostoma lanceolatum)
TTTCAAAATGGCGGAAGCAGACGAACAAGTTGACAGGGGCGGCTGTGGTG
ACTGTGGAAAGACTCAAAAACCGAAGAGAAGGTTGCCAGAATGGATGAAA
GACATCGTTTTAGACAAGGTTAAGAATTCTACCGTGCCTACTCTACTCTA
CTCTACTCTACTCTACTCTACTCTACTCTACTCTACTCTACTCTACTCTA
CTCTACTCTACTCTACTCTACTGTACACTACTCTACTCTACTCTACTCTA
CTCTACTCTACTCTACTCTACTCTACTCTACTCTACTCTACTCTACTCTA
CTGTACACTACTCTACTCTACTCTACTCTTGATCTTGATTTGGTACTGGG
CAACACTCTACTAGTACTCTACTCTACTCTGCTCTGCTCTACTCTACTCT
ACTCTACTCTACTCTACTCTACTCTACTCTTGATCTTGATTTGGTACTGG
GCAACACTCTACTCTACTCTACTCTACTCTACTCTACTCTTGATCTTGAT
TTGGTACTGGGCAACACTCTACTAGTACTCTACACTACTCTGCTCTGCTC
TGCTCTGCTCTTCTCTTCTCTGCTCTGCTCTGCTCTGCTCTGCTCTGCTC
TACTCTGCTCTACTACTCTGCTCTGCTCTGCTCTGCTCTGCTCTGCTCTG
CTCTGCTCTGCTCTACTCATAAATCGTTGGTCATCATACTTCATAGGGTC
ATACCAGTCAGCTAAAAACTATGGTAACCTTTATTCACAAATTATCCCTT
TTATATCAATACTCAGGATCATACTAAAAAGAAGAGAAAACAGGGAGGAC
CACAGAAAGGTCACACACCACTTGTCCTGAACCTCCCAGTCCTGAAGTTC
ATAGGTAACGTGGTATACTGTTACCAGACAGGCGACTGTTCGTTCATGTG
TGAAGACATCATGTAAGTATATTCTCTTTGCCTTCTCTATTTTACTTGCA
AACCTTGAACTTTTTTCAGTGGTCTTATTTTTGTTGTTATAAGTGACCTC
TCCACCACAGATTNGTTGTTATAAGTGACCTCTCCAGCACAGATTCATGA
CACCATACCATTATGAATATACGTTTCTAATGTATTACTGTACAACGTTA
ACAGAACTGTTTTGGCACCACAAAATAAAGCCTCCCATTTCTGTTGTCGC
GGCAAAGATAACTAAATCTACTGTATTAATGTCAAGTGATTGATAATCCA
AAATCCTTATATGTTCAATCCTTATACATGTACCTCTTCCACATACATGA
AAATGATAATTCTTCATCTCCTTACAACTAGTCACTTGAATCATTATTAT
TATTTACAGGAGTAACACAACAGATGAGCGCAGCTGTGTTCTGGGGTTTG
ATATAGAGTGGCCAGTGACATACACAGCAGGGAAAGAAGAGAAGACAGCA
CTGCTCCAGCTCTGTCCCTCTCACAACAAGTGTTATCTCTTCCACCTGTC
TTGTATGGCTGGTATGCACATCAATGTAAAGTTATTTGCTTGTTTGTTTG
TTTGGAATATGGGTTGGTGGAAAGAGTGGTCCAGCCTGTATGGTGGTAAA
CATGGTACAGTCCAGTCGGGGTGAAAAAACTGACATAACTCTTTCTGCAT
GTGGTTGTGCCTTTTGGCAGAAATACTGGACTACTGGAATCTTTCTACAA
GTATGCATATAAACAAGACCTCCATAGCTAATGGTTATATACACTGTACA
TGTATTTCATGCCCAAATTTTCCATAGTTTTTTTCACTATGTGCAGTAAA
GGATATGTTTTCATTGGTCCTTGTCACATTCAGGTTTTCCTGGTGGACTG
AAGAAGCTTCTTGAGACTGAATCGATCAAAAAAGTTGGAGTTGGCATCCA
GGGGTGAGAAAGTATTTCTTATTGTTAGATCACAAATCAAGTTCTGCTAA
GATGTTAATTTTCCCAGACCTCCTCCCTGTGTTAAAGAAGAGTCTCAAAA
TTCTCCAAAATTCTCCAATGACTTGCAAATCTAGGAAGGTGAAAAGGTGG
TCTTGTGTTTAGAGTTGTTGACTTTCTGGGTTTGAATCCCTAGGCACGCA
GGCAACTCTTGCACCTATTTCAGGTGAATATGACTAGTACCAAGCTATGG
TTAAGGATGACCTCTGCCATGGGGTGGAACTCCTGTGTTTGAGGAGAGAC
ACACCAAAAGCGTTTGAAGATCCCATCGCACTTTTCGAAAAGAGTAGGGT
GTGAGTGGACCAAACCTTACAGTCTGGTCTTATAATGTATGCTTGTACCT
ACAGCACAAAACTAGACAAGTGTGTTATGCCCAAAGGTAAGTTTACCAAC
TTGATGAAGTGATTGACAGAAGGTCTTGTCTTGTCCACTACAGGGATGTA
TGGAAACTGCTGCGAGACTTTGACATACAGATGAAGGGGTGTGTGGACCT
CTCCAACCTGGCCAATCAGAATACTGGGAGTGCAGAAATCTGGAGCCTGG
ACAACCTCTGCAAACATGTGGTAACTTTGTACATCAATGATCGTCTTTGC
TCAGGGATATTTTGTTAACATTTCTACATTGCTTTTGTCAATCACCAATC
TCTTGGAATTCTTCATAATCACAGATGTAAGGTTTTAACTCTATTTCAAA
TGCTGTTCACTCCTGGCCAATTTCCTTGGTTCTTAGAGGTATCAGGCATT
GTTTTCATCATGCTGTTCCCGTTAATAAGCACATCTTATTTGATATGAGA
ACCAACACTTTGAATTGGTGTAGCCTTAGCATTATTCATAACGGTAACTT
CATACACTTCCAAAATAATTCACTGTCTGGTCGGTGATAAAATCTCTTCT
TAGTTCGCACATAATAAAGTGAACGACATCATATCTTCTCCACATATTGT
TAACCTTGAAATTTACAACTGGCATTTTCTAAAGGTGTGTCATTGATGAT
GTCATTAAAGGATGCTGTTGCTAAACATTAATCATAGATATTCTTTTATA
TTGAAGTGACCTTTATTTATTTATTTATTTATTTATTTATTGATGTTGTT
CTTGCTAAGTTGAAGCAACGACTGGACAAGGACCCAGGCGTCAGGAAGAG
TGACTGGAGACAGTACCCCCTCACAGCTACACAACAACAGTACGCAGCAG
CTGATGCTTATGTAGGTGCCACACTTTCCCAAATCATTACCTCCATGGAG
GTATTGTTTTCGGTGTCTGTTTGTTTGTCTGCTTGCTTGTCCATGCTGCC
GGAATATATATTTTCCATATGCTAGTCATGTTCATCACTGCAGAGTGACA
GGATGTGAAGTTCAGAGTTGCCAGAGCGACCAAAAGTGAAGTTTGTGTTC
TCACAGTAACTGTTAAATACATTTTCCATAATGTTACCCTGTGTCTTTGT
GTAAATTTGCTGTGCATCTGGTTATGATTAGGAAGTTCCAAACAACATCT
ATTTTTAGAACCAACCCACTTTGTTCTTTTTATTTCCAGGCTGGTCTTCT
TCTGTATAACAAGTTGACACAAACAACAGGTGACAAAAACACAAAGAATG
ATGTATCTACATAAAGACAATCAAAAAAATGAAATAGAGCATTCTATAAC
GTTAGCATCTTTCTGGCAAACAGAAAAGGAAAGTCAGCGAGGGAGCGACA
CTGAAGAGGGCCTGCACGGGGGGGTCCCAACAACGCTCTACGCTAAATTT
GGAGGGCCGGCTACGTAATACGCTAAATTCAGAAACCCC

Coding sequence (CDS) from alignment at Sc0000000:3989249..3992937+

>transcript:BL78897_cuf2 ID=transcript:BL78897_cuf2|Name=transcript:BL78897_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1788bp|location=Sequence derived from alignment at Sc0000000:3989249..3992937+ (Branchiostoma lanceolatum)
TTCAAAATGGCGGAAGCAGACGAACAAGTTGACAGGGGCGGCTGTGGTGA
CTGTGGAAAGACTCAAAAACCGAAGAGAAGGTTGCCAGAATGGATGAAAG
ACATCGTTTTAGACAAGGATCATACTAAAAAGAAGAGAAAACAGGGAGGA
CCACAGAAAGGTCACACACCACTTGTCCTGAACCTCCCAGTCCTGAAGTT
CATAGGTAACGTGGTATACTGTTACCAGACAGGCGACTGTTCGTTCATGT
GTGAAGACATCATGAGTAACACAACAGATGAGCGCAGCTGTGTTCTGGGG
TTTGATATAGAGTGGCCAGTGACATACACAGCAGGGAAAGAAGAGAAGAC
AGCACTGCTCCAGCTCTGTCCCTCTCACAACAAGTGTTATCTCTTCCACC
TGTCTTGTATGGCTGGTATGCACATCAATGTTTTCCTGGTGGACTGATTC
AAAATGGCGGAAGCAGACGAACAAGTTGACAGGGGCGGCTGTGGTGACTG
TGGAAAGACTCAAAAACCGAAGAGAAGGTTGCCAGAATGGATGAAAGACA
TCGTTTTAGACAAGGATCATACTAAAAAGAAGAGAAAACAGGGAGGACCA
CAGAAAGGTCACACACCACTTGTCCTGAACCTCCCAGTCCTGAAGTTCAT
AGGTAACGTGGTATACTGTTACCAGACAGGCGACTGTTCGTTCATGTGTG
AAGACATCATGAGTAACACAACAGATGAGCGCAGCTGTGTTCTGGGGTTT
GATATAGAGTGGCCAGTGACATACACAGCAGGGAAAGAAGAGAAGACAGC
ACTGCTCCAGCTCTGTCCCTCTCACAACAAGTGTTATCTCTTCCACCTGT
CTTGTATGGCTGGTATGCACATCAATGTTTTCCTGGTGGACTGATTCAAA
ATGGCGGAAGCAGACGAACAAGTTGACAGGGGCGGCTGTGGTGACTGTGG
AAAGACTCAAAAACCGAAGAGAAGGTTGCCAGAATGGATGAAAGACATCG
TTTTAGACAAGGATCATACTAAAAAGAAGAGAAAACAGGGAGGACCACAG
AAAGGTCACACACCACTTGTCCTGAACCTCCCAGTCCTGAAGTTCATAGG
TAACGTGGTATACTGTTACCAGACAGGCGACTGTTCGTTCATGTGTGAAG
ACATCATGAGTAACACAACAGATGAGCGCAGCTGTGTTCTGGGGTTTGAT
ATAGAGTGGCCAGTGACATACACAGCAGGGAAAGAAGAGAAGACAGCACT
GCTCCAGCTCTGTCCCTCTCACAACAAGTGTTATCTCTTCCACCTGTCTT
GTATGGCTGGTATGCACATCAATGTTTTCCTGGTGGACTGATTCAAAATG
GCGGAAGCAGACGAACAAGTTGACAGGGGCGGCTGTGGTGACTGTGGAAA
GACTCAAAAACCGAAGAGAAGGTTGCCAGAATGGATGAAAGACATCGTTT
TAGACAAGGATCATACTAAAAAGAAGAGAAAACAGGGAGGACCACAGAAA
GGTCACACACCACTTGTCCTGAACCTCCCAGTCCTGAAGTTCATAGGTAA
CGTGGTATACTGTTACCAGACAGGCGACTGTTCGTTCATGTGTGAAGACA
TCATGAGTAACACAACAGATGAGCGCAGCTGTGTTCTGGGGTTTGATATA
GAGTGGCCAGTGACATACACAGCAGGGAAAGAAGAGAAGACAGCACTGCT
CCAGCTCTGTCCCTCTCACAACAAGTGTTATCTCTTCCACCTGTCTTGTA
TGGCTGGTATGCACATCAATGTTTTCCTGGTGGACTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL78897gene:BL78897Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL78897_cuf2transcript:BL78897_cuf2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL78897_cuf2-E1BL78897_cuf2-E1-1564476830-13306Branchiostoma lanceolatumexon
BL78897_cuf2-E2BL78897_cuf2-E2-1564476830-13308Branchiostoma lanceolatumexon
BL78897_cuf2-E3BL78897_cuf2-E3-1564476830-13310Branchiostoma lanceolatumexon
BL78897_cuf2-E4BL78897_cuf2-E4-1564476830-13313Branchiostoma lanceolatumexon
BL78897_cuf2-E5BL78897_cuf2-E5-1564476830-13315Branchiostoma lanceolatumexon
BL78897_cuf2-E6BL78897_cuf2-E6-1564476830-13317Branchiostoma lanceolatumexon
BL78897_cuf2-E7BL78897_cuf2-E7-1564476830-13319Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000000genomeSc0000000:3989249..3992937 +
Properties
Property NameValue
Transcript idBL78897_cuf2
Biotypeprotein_coding