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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL78891_cuf1 >transcript:BL78891_cuf1-protein ID=transcript:BL78891_cuf1-protein|Name=transcript:BL78891_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=312bp
QSFCDGSPTGVLGDKHQSNVEDHPTKSKASLDEKPSEHSVEKPFKCDQCD
YSAAQKYYLDRHLAKHTGEKPYMCGECGYRTAHKHHLSKHMRTHTGERPY
KCDQCDYSAAEKSTLDNHLAKHTGDKPFMCGECGYRSADRGSLYRHMRTH
TGEKPYKCDQCDYSAAQKCNLDSHLAKHSGEKPLMCDECGYRTVNKSHMS
RHMRTHTGEKPYKCDQCDYSAAEKSTLDNHLAKHTGEKPYICGECKYRTT
KKSHLSEHMRTHTGEKPYKCDQCXSSKISRCPGQQKLYSHSYMYIDLREM
DLRILHVLYASV Run BLAST on NCBI mRNA from alignment at Sc0000114:342498..344568+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL78891_cuf1 ID=transcript:BL78891_cuf1|Name=transcript:BL78891_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2071bp|location=Sequence derived from alignment at Sc0000114:342498..344568+ (Branchiostoma lanceolatum)
CAGAGCTTCTGTGATGGGTCTCCTACTGGAGTTTTAGGGGACAAACATCA
GAGCAATGTAGAAGACCATCCTACGAAAAGCAAAGCCAGTTTGGACGAAA
AGCCATCAGAACATTCGGTTGAGAAACCCTTTATGTGTAAGGAGTACGGG
TACAGGACAGCTAACAAGAGTCACTTATCCAGACATATGAGAACCCATAC
TGGTGAAAAACCCTACAAGTGTGACCAGTGTGACTATTCTGCTGCACAGA
AATATTATTTGGATCGACATCTAGCCAAACACACTGGTGAGAAACCCTAC
ATGTGTGGGGAGTGCGGGTACAGGACAGCTCACAAGCATCACCTATCAAA
ACATATGAGAACCCATACTGGTGAAAGACCCTACAAATGTGACCAGTGTG
ACTATTCTGCTGCAGAGAAATCCACATTGGACAACCATCTAGCCAAACAT
ACTGGTGACAAACCCTTCATGTGTGGCGAGTGCGGGTACAGGTCAGCTGA
CAGGGGTAGCCTATACAGACATATGAGAACCCATACTGGTGAAAAACCCT
ACAAGTGTGACCAGTGTGATTATTCTGCTGCACAGAAATGCAATTTGGAC
AGTCATCTAGCAAAACACTCTGGAGAAAAACCCTTAATGTGCGACGAGTG
CGGGTACAGGACAGTTAACAAGAGTCACATGTCCAGACACATGAGAACCC
ATACTGGTGAAAAACCGTACAAGTGTGACCAGTGTGACTACTCTGCCGCA
GAGAAATCCACATTGGACAACCATCTAGCCAAACATACTGGAGAGAAACC
CTACATATGTGGGGAATGTAAGTACAGAACAACTAAAAAGTCTCATTTAT
CTGAACATATGAGAACCCACACAGGAGAAAAGCCCTACAAGTGTGACCAG
TGTGNCAGTTCAAAAATCAGCCGTTGTCCAGGACAACAGAAGTTATACAG
CCATTCATACATGTATATAGACCTCAGGGAAATGGATTTAAGAATACTAC
ATGTGCTCTACGCTAGTGTGTGAGTAATAAGCCATTTCACAGTTCTGGAA
TCTGAATCCTACCACATAGCGTTGCATACTTTCTTAGAAATACTTCTAAT
GTCAAGAATAAGGAGGCTTTAGTACTCAGTAACAAACTTATTCTCCAGAT
CTGTTGATTATAATATAGGCTATCCTGACCCCTAATTTTGCACTGACATC
CTACAAAATGTTATTTTATCTTTTAACATTGCAACAAGGCAGTACAATGC
TCAATCCGGGCAGCATTGCTGATATCGGTGCCATGTAACATTATAAGTAT
ATAACACGCAATCATCTCCTAGCAGATCTACACGGGGCGCGAAAATCGTA
TATGCTAGTTAGAGAAGCTCCAGTCAGCCTGGAGCTTATCTAGCTGACTG
GAGCTTCTCTGGCTGGCATATACGATTTTCGCGCCCCGTGTAGATCTGCT
TGGAGATTAGCAATTATGTACATCAGTTCAACTTTCATTTATAGAAATGT
TGTGCTTCGGTGTAACGAGTGCGCCTAAAGTTTGTAATCAATGTTTATTT
TCAAACTTACTAACCTATACTATATGTATTGGAACACTTTAATGATTATG
CTATACTTGGCGTGTTTGAAATTATATAGAATTGCAAGGTAAGCTTTTGT
CATATGAAGCGTCTGCCATTGCTTAAATGTAAGAAGACAGTTGATTCAAA
ATATGCTCATTTCTGACGTGTGAAAATAAAATGTTTAATAAAAGAACAAC
ATCTGAACAGGTTCCATTCCGAAATAATTTATTCTCACTCATTTATTAAC
CTATAGCTATAATATTTTGCATATCAGTGCTAGGTTTTAACTTACAGGGA
AGTAATAAAAATTGTCGGATTAAGGTTGCGTCGGATTAAGGTTCAGTGCC
GTTATATACACGATATGTTGGAGCGCTAATGATTATGCTATACCAGGAGT
GTTGAACATTATGAAGTATTGTGAAGTAATCTTGTGTTATATGGAGCGAC
TGTCATGGCTGATAAGTAAGAACACAGTTTATTCAAAACATGACAAGGGA
TAATGAAAATTTTGCTTAAAG Coding sequence (CDS) from alignment at Sc0000114:342498..344568+ >transcript:BL78891_cuf1 ID=transcript:BL78891_cuf1|Name=transcript:BL78891_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1878bp|location=Sequence derived from alignment at Sc0000114:342498..344568+ (Branchiostoma lanceolatum)
CAGAGCTTCTGTGATGGGTCTCCTACTGGAGTTTTAGGGGACAAACATCA
GAGCAATGTAGAAGACCATCCTACGAAAAGCAAAGCCAGTTTGGACGAAA
AGCCATCAGAACATTCGGTTGAGAAACCCTTTAAGTGTGACCAGTGTGAC
TATTCTGCTGCACAGAAATATTATTTGGATCGACATCTAGCCAAACACAC
TGGTGAGAAACCCTACATGTGTGGGGAGTGCGGGTACAGGACAGCTCACA
AGCATCACCTATCAAAACATATGAGAACCCATACTGGTGAAAGACCCTAC
AAATGTGACCAGTGTGACTATTCTGCTGCAGAGAAATCCACATTGGACAA
CCATCTAGCCAAACATACTGGTGACAAACCCTTCATGTGTGGCGAGTGCG
GGTACAGGTCAGCTGACAGGGGTAGCCTATACAGACATATGAGAACCCAT
ACTGGTGAAAAACCCTACAAGTGTGACCAGTGTGATTATTCTGCTGCACA
GAAATGCAATTTGGACAGTCATCTAGCAAAACACTCTGGAGAAAAACCCT
TAATGTGCGACGAGTGCGGGTACAGGACAGTTAACAAGAGTCACATGTCC
AGACACATGAGAACCCATACTGGTGAAAAACCGTACAAGTGTGACCAGTG
TGACTACTCTGCCGCAGAGAAATCCACATTGGACAACCATCTAGCCAAAC
ATACTGGAGAGAAACCCTACATATGTGGGGAATGTAAGTACAGAACAACT
AAAAAGTCTCATTTATCTGAACATATGAGAACCCACACAGGAGAAAAGCC
CTACAAGTGTGACCAGTGTGNCAGTTCAAAAATCAGCCGTTGTCCAGGAC
AACAGAAGTTATACAGCCATTCATACATGTATATAGACCTCAGGGAAATG
GATTTAAGAATACTACATGTGCTCTACGCTAGTGTGTGACAGAGCTTCTG
TGATGGGTCTCCTACTGGAGTTTTAGGGGACAAACATCAGAGCAATGTAG
AAGACCATCCTACGAAAAGCAAAGCCAGTTTGGACGAAAAGCCATCAGAA
CATTCGGTTGAGAAACCCTTTAAGTGTGACCAGTGTGACTATTCTGCTGC
ACAGAAATATTATTTGGATCGACATCTAGCCAAACACACTGGTGAGAAAC
CCTACATGTGTGGGGAGTGCGGGTACAGGACAGCTCACAAGCATCACCTA
TCAAAACATATGAGAACCCATACTGGTGAAAGACCCTACAAATGTGACCA
GTGTGACTATTCTGCTGCAGAGAAATCCACATTGGACAACCATCTAGCCA
AACATACTGGTGACAAACCCTTCATGTGTGGCGAGTGCGGGTACAGGTCA
GCTGACAGGGGTAGCCTATACAGACATATGAGAACCCATACTGGTGAAAA
ACCCTACAAGTGTGACCAGTGTGATTATTCTGCTGCACAGAAATGCAATT
TGGACAGTCATCTAGCAAAACACTCTGGAGAAAAACCCTTAATGTGCGAC
GAGTGCGGGTACAGGACAGTTAACAAGAGTCACATGTCCAGACACATGAG
AACCCATACTGGTGAAAAACCGTACAAGTGTGACCAGTGTGACTACTCTG
CCGCAGAGAAATCCACATTGGACAACCATCTAGCCAAACATACTGGAGAG
AAACCCTACATATGTGGGGAATGTAAGTACAGAACAACTAAAAAGTCTCA
TTTATCTGAACATATGAGAACCCACACAGGAGAAAAGCCCTACAAGTGTG
ACCAGTGTGNCAGTTCAAAAATCAGCCGTTGTCCAGGACAACAGAAGTTA
TACAGCCATTCATACATGTATATAGACCTCAGGGAAATGGATTTAAGAAT
ACTACATGTGCTCTACGCTAGTGTGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000114 | genome | Sc0000114:342498..344568 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL78891_cuf1 |
| Biotype | protein_coding |
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