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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL78855_cuf0 >transcript:BL78855_cuf0-protein ID=transcript:BL78855_cuf0-protein|Name=transcript:BL78855_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=498bp
MIINEMLKAGKIILLSPLLRLFNSTFSKGTFPKTWSQSYIVPIFKAGRKD
DPNNYRGIAISSCLGKLFSSILNRRLSTFLEEKEIIKPNQTGFRKNYRTS
DNIFILKTLISKYTQSGKRLFACFVDLSKAFDSIWHEGLLYKLLSNGISG
KVFDIIKDLYNQSEASVKTKTGLTENFPVEIGVRQGCVLSPTLFNLYISD
LIEELNAKHLDAPLLQLSKVNSLFYADDIVLLSESKEGLQNAINTLGRYC
QQWKLTVNLAKTKIIVFNKRGLLFNNLSFSLCNKEIEIVSSYCYLGIMFT
AGCTLSAATKNLQKRALRAMYNIRSTLGETRSSVSLHCKLFDTCIVPILL
YGSEVWCNSNMNDKSPIETVHLKFCKYVLGVRRNASNFACRSELGRFPLQ
IEAQSRMYSYYVRLVNGVHTDSLQYEAYMVQQDLDRRKTSCWLSNVRKML
EESGFAFLYINGPSNTHSHSNDLKQRLKDIYIQKFNSELHAKGRRENQ Run BLAST on NCBI mRNA from alignment at Sc0000190:441612..444249- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL78855_cuf0 ID=transcript:BL78855_cuf0|Name=transcript:BL78855_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2638bp|location=Sequence derived from alignment at Sc0000190:441612..444249- (Branchiostoma lanceolatum)
CCAGAAACAACTCTGATAGAAATCTTCCTAATACTTTTGGCAAAAACCTA
ATTGATCTATGTGCCCAAGCAGACCTTCGTATTCTTAATGGTCGTGTTCT
AGGTGATTTAAATGGACGCTACACCTGCTATCAACCTAGAGGTTGCAGCA
CGGTGGACTATACCATCACAAGTAGCGCCCTTCTTCATAACATTAACGCA
TTCAAAGTCCACAGTTTATCAGAATTTTCAGATCACTGCCTGATAACTAC
GAATATACGTACGCCACATTGGAACATTCAAGACACAAAAATGACCAAAT
GCAAATTACGCCCCCTTCCAAAAAAGTTTGTTTGGGGCGAAAANTTCAAG
ACACAAAAATGACCAAATGCAAATTACGCCCCCTTCCAAAAAAGTTTGTT
TGGGACGAAAATTCAGGTGAAAAATTCATCCGTGCTCTAAATAGCCCGAT
GATATCCGACAAACTAAACAACTTTTTATCTATTGGGCATGATATTACAT
TAACAACTCGTAACATTGATGAAGAAATTAGCAGGTTTCAGAATATTCTA
GAAACAGCAGGAAAATTATCATTAAAAATAAAATGTAACAGGAGAACCAA
AGGACCAAAACAAAACAAAAAATGGTTTGACAAAACATGTTATGAGGCCC
GGAAAGAACTACGAAACCTCAGATATCTCCTTGTACACAACCCAAAAAAT
CCATCCCTAAGAGGTAGTTATTTTAAGAAAAAGAAAAAATTCAATAAACT
TGTTCGAAAACGCAAACGAGAATTCGAAAACAACTATCTAATGCGCCTTC
AAAACCTCCAAGAAAATAATCCGACCGCTTTCTGGAACCTACTTAACGAA
CTCAAAAAGACCAACTCAGTACGTCAGGANACCTACTTAACGAAAAGACC
AACTCAGTACCTCAGGAAGAACTACCGGCCGACACATGGGTTGAACACTT
CAGAAATATACACAGCAAATCCAGACTAAAACAAAAAACTTTTGATCTTA
ATTTTGAAAAGGAAATTCTTCACAAATTCCAGACACTACAAAAATGTGAT
TCAAGTCCAGGACCTTTAGATAATCCAATTACTGCATCAGAAATCAACGA
TGCAATAAAAGCCCTCAAGAACAAAAAAGCCAGCGGGGACGACATGATCA
TCAATGAAATGCTAAAAGCAGGAAAAATAATCCTATTGTCCCCTTTATTA
AGACTATTTAACAGCACATTTTCGAAAGGAACTTTCCCCAAAACATGGTC
CCAAAGTTATATTGTCCCCATCTTCAAAGCAGGGCGAAAAGATGACCCCA
ACAATTATCGGGGAATCGCCATTTCAAGCTGTTTAGGAAAACTGTTCTCT
TCAATACTTAACAGAAGATTGTCAACCTTTCTTGAAGAAAAAGAAATCAT
AAAACCAAACCAAACAGGATTCCGAAAAAATTACAGGACATCTGATAACA
TCTTCATACTGAAAACCCTTATATCTAAATACACACAATCTGGAAAACGC
TTATTTGCTTGCTTTGTAGATTTGTCAAAAGCCTTTGACTCCATCTGGCA
CGAGGGGCTATTGTACAAACTTCTTTCCAATGGCATTTCAGGAAAAGTCT
TTGATATAATCAAGGATTTATACAACCAGTCCGAAGCTAGTGTCAAAACT
AAGACGGGCTTGACTGAAAATTTTCCTGTTGAAATTGGTGTACGTCAAGG
TTGCGTTCTAAGCCCCACCTTATTCAACCTGTACATTAGTGACCTTATAG
AGGAACTAAATGCAAAACACCTAGACGCCCCCCTGTTACAACTCTCAAAA
GTAAATAGCCTATTTTATGCAGATGATATTGTTTTACTATCGGAAAGTAA
GGAGGGACTACAGAACGCAATTAATACTCTTGGCCGGTATTGCCAACAAT
GGAAGCTGACTGTCAACCTGGCGAAAACAAAAATTATAGTATTTAACAAA
AGAGGCCTTTTATTCAATAATCTTAGTTTTTCGCTATGTAATAAAGAGAT
AGAGATAGTTTCATCATATTGCTACCTAGGAATTATGTTTACAGCAGGAT
GTACATTGAGCGCTGCCACGAAAAATCTACAAAAGAGAGCCTTAAGAGCA
ATGTATAACATCAGAAGTACGCTTGGGGAGACTAGATCTTCTGTATCACT
GCATTGTAAACTGTTTGACACATGTATTGTACCGATATTATTGTATGGAT
CTGAAGTCTGGTGCAACAGTAATATGAATGACAAATCTCCGATAGAAACT
GTACATTTAAAATTCTGTAAATATGTCCTTGGTGTTCGGAGGAACGCCAG
TAACTTTGCATGTAGATCGGAACTGGGTCGTTTTCCGTTACAAATAGAGG
CTCAAAGCAGAATGTACAGTTACTATGTTAGATTGGTTAACGGAGTACAT
ACAGATAGTCTTCAATACGAAGCTTATATGGTACAACAAGATCTAGATCG
CCGAAAAACATCCTGCTGGTTATCTAATGTAAGAAAAATGTTAGAGGAGT
CTGGTTTTGCCTTCCTATACATAAACGGTCCCTCAAACACACATTCGCAT
TCAAATGACCTAAAACAAAGATTAAAGGATATTTACATCCAAAAATTCAA
TTCAGAATTACACGCTAAAGGACGAAGAGAAAACCAAG Coding sequence (CDS) from alignment at Sc0000190:441612..444249- >transcript:BL78855_cuf0 ID=transcript:BL78855_cuf0|Name=transcript:BL78855_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1494bp|location=Sequence derived from alignment at Sc0000190:441612..444249- (Branchiostoma lanceolatum)
ATGATCATCAATGAAATGCTAAAAGCAGGAAAAATAATCCTATTGTCCCC
TTTATTAAGACTATTTAACAGCACATTTTCGAAAGGAACTTTCCCCAAAA
CATGGTCCCAAAGTTATATTGTCCCCATCTTCAAAGCAGGGCGAAAAGAT
GACCCCAACAATTATCGGGGAATCGCCATTTCAAGCTGTTTAGGAAAACT
GTTCTCTTCAATACTTAACAGAAGATTGTCAACCTTTCTTGAAGAAAAAG
AAATCATAAAACCAAACCAAACAGGATTCCGAAAAAATTACAGGACATCT
GATAACATCTTCATACTGAAAACCCTTATATCTAAATACACACAATCTGG
AAAACGCTTATTTGCTTGCTTTGTAGATTTGTCAAAAGCCTTTGACTCCA
TCTGGCACGAGGGGCTATTGTACAAACTTCTTTCCAATGGCATTTCAGGA
AAAGTCTTTGATATAATCAAGGATTTATACAACCAGTCCGAAGCTAGTGT
CAAAACTAAGACGGGCTTGACTGAAAATTTTCCTGTTGAAATTGGTGTAC
GTCAAGGTTGCGTTCTAAGCCCCACCTTATTCAACCTGTACATTAGTGAC
CTTATAGAGGAACTAAATGCAAAACACCTAGACGCCCCCCTGTTACAACT
CTCAAAAGTAAATAGCCTATTTTATGCAGATGATATTGTTTTACTATCGG
AAAGTAAGGAGGGACTACAGAACGCAATTAATACTCTTGGCCGGTATTGC
CAACAATGGAAGCTGACTGTCAACCTGGCGAAAACAAAAATTATAGTATT
TAACAAAAGAGGCCTTTTATTCAATAATCTTAGTTTTTCGCTATGTAATA
AAGAGATAGAGATAGTTTCATCATATTGCTACCTAGGAATTATGTTTACA
GCAGGATGTACATTGAGCGCTGCCACGAAAAATCTACAAAAGAGAGCCTT
AAGAGCAATGTATAACATCAGAAGTACGCTTGGGGAGACTAGATCTTCTG
TATCACTGCATTGTAAACTGTTTGACACATGTATTGTACCGATATTATTG
TATGGATCTGAAGTCTGGTGCAACAGTAATATGAATGACAAATCTCCGAT
AGAAACTGTACATTTAAAATTCTGTAAATATGTCCTTGGTGTTCGGAGGA
ACGCCAGTAACTTTGCATGTAGATCGGAACTGGGTCGTTTTCCGTTACAA
ATAGAGGCTCAAAGCAGAATGTACAGTTACTATGTTAGATTGGTTAACGG
AGTACATACAGATAGTCTTCAATACGAAGCTTATATGGTACAACAAGATC
TAGATCGCCGAAAAACATCCTGCTGGTTATCTAATGTAAGAAAAATGTTA
GAGGAGTCTGGTTTTGCCTTCCTATACATAAACGGTCCCTCAAACACACA
TTCGCATTCAAATGACCTAAAACAAAGATTAAAGGATATTTACATCCAAA
AATTCAATTCAGAATTACACGCTAAAGGACGAAGAGAAAACCAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000190 | genome | Sc0000190:441612..444249 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL78855_cuf0 |
| Biotype | protein_coding |
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