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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL78605_cuf0 >transcript:BL78605_cuf0-protein ID=transcript:BL78605_cuf0-protein|Name=transcript:BL78605_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=149bp
MLFSFSVSYGFVTTVQLYLRISSFDTRQSVLYCPAKQTEMCNRLREEQAG
FRPNRSCSDQIFTLRNIIEQSLEVQRPVSLNFIDFKKAHRINTENQYSES
VLRTYGTHERFTDILRGIKLCEGRLSYIDSFDKVTAVRQGCVLSHLLSP Run BLAST on NCBI mRNA from alignment at Sc0000461:145116..148392+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL78605_cuf0 ID=transcript:BL78605_cuf0|Name=transcript:BL78605_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3277bp|location=Sequence derived from alignment at Sc0000461:145116..148392+ (Branchiostoma lanceolatum)
TGATGCCTTACATGAAAGCGAGTCTTTGGCGCTCACACCAGGTTGTGGCA
CTCGGGTGCAAAGCTTGAAACAACCCGCACCCTTGGCTGCCCCTTCCGGC
GATTTCGTGATGTCTTACACGAAACATGCGCCCCAGGTTGTGTCCATCAT
GTAATGAAAATATTGAAGATGAATTTCATTTTGCGATGACCTGTCTTACT
TATGATAAAGAGATAGATGCGCTGTTACAGACTATCACTACTAAGACAAA
TTTAACCCTTTCCCGTACACAGAACGATGTTTTTTCATGTATTGCTGTCA
TGTCCAACTCCTATACCGCATACAAAGGTCAATTTCATCATACTTCACGA
AAGTATTCTGTGCAAATCAGGTCCTTCTTTCACATGATTAATGAGGATCA
GTTGAAATTCCCTTTCAATGTGCTATTTTTTGGATGACGACCTATATACG
AGGACACATATGGACAGTGACAGGCTTTGGGTCAACATGTAGGCAGTGCT
TTTCACAATGTCAAAGGCGCTTCAAGACATATGAACTGAGAACTGTGAAA
TAGAGAGGAAAACCGATTGATATATCGATTACGTAAATATGGACATGATT
TGTTTAATAAGTTTTGTACTTCAATCTTGTACTTTTGACAAGTCTCCATG
TTGTTCAGTTTTTCTGTGTCATATGGTTTTGTCACTACAGTACAGTTGTA
TTTGCGTATTAGTTCTTTTGATACTAGGCAAAGTGTTCTGTACTGTCCCG
CTAAACAGACTGAGATGTGCAACAGACTCAGGGAGGAACAGGCTGGATTC
CGACCCAACAGGTCCTGCAGTGATCAAATATTCACATTACGAAACATTAT
TGAACAGAGTCTTGAGGTCCAAAGACCAGTATCCTTAAACTTTATTGACT
TTAAAAAAGCACATAGAATCAATACTGAGAATCAGTACTCAGAATCAGTA
CTCAGAACATATGGTACACATGAAAGGTTCACAGACATCTTACGAGGGAT
CAAGTTGTGTGAAGGTCGGCTCAGCTATATTGACAGCTTTGATAAAGTCA
CTGCAGTAAGACAGGGGTGTGTTCTATCCCATCTGTTGTCACCATAGATT
ATGTTATGTGTTAAGCCATGGACAACCCAAACTTTGGCCTAGTCTGGAAA
GGAAGTAGTCGTCTCACCGATCTTGACTTTACAGACGACATTGCCTTAAC
AGCCGAGTCCCATAAAATTCTCCAAGATATGACCATTAACACAGAGACAA
ATTCAGCTAAAGTAGGTCTGAGAATTAGCGGCAACAAAACCAAAGCAATG
CAGGTTGGAGAGCAACCTCCCCCCCCCCCACAGGTGCAAATTAATGGTGA
ACCAACGGAAAACTTACTTTGTCACCCAGCTCACATACCTTGGCAGTGTT
ATCACTGCCGATGGGGACTCTGACACAGACATACACTCCCGCCTTGGCAA
AGCAGCGGCGGTCTTCAGACGAATGAACACAGTGTGGTCTAGCAGGACAC
TTTCCAGAAAGCTCATGGTTAAGCTAATTCTATCTGTAATACTCATCATA
CATTAAGTATGCAATCCATAACACACCTTTCAAACACATCTTTCATACAA
GTTAACACCATTCGGCGAAGGTATGGGATCGCCGAACTCTAGTTGTAAAA
TAGATTAGCCTTGCTCTAAATGATGTAATGATGATAATTATGTAATGGTG
ATGATGTAATGATAATGTTGATGTGCTTACTTGCTTACATACTTATGTCA
AGACCTTCCAGTCACGAGTCGAGAGGGCAGCCTAAGTGTTTTGGTCCTTT
AGCGCCTGGAGCATACTATCCACTTCAAGTCCGGTGTCTTTCTTAGTAGT
GTCTATAAAGGTTGCTGTGGGTCTTCCTGGCCTCCTTTTCCCATGCTTGG
GAATCCAGAGTACCAGGTCAGCTACTTCTTCCTTGCTCCTGAGGCAGTGT
CCGGCGAACTTCAACCTCCTTGTCCTGATCTTATCGGACAGCTTTGGTAG
GCCAGCATACAAGTCTTTGTTGGTAATGTGTTGTGTCCAGTGGATGTTGA
GCGTTGTTCTCAGAAGCCTCGTGTAACACCCATCCAACTGCTTTTCTAAC
TTGGAGGTAACTGTCCATGTAAAANAGAAGCCTCGTGTAACACCCATCCA
ACTGCTTTTCTAACTTGGAGGAAACTGTCCATGTAAAGTAAAAGTAAAAC
AGTCATCCTCAATTCAGGTGAAGTGCAATGCTTTTTCAAGTAGCTAGTGG
TAGTGCAATGTGGCTTCGCTACGGCTCGCGGTTTTTGGCCAAGCACACCG
GGTCACCCCTACTTATCTCGATAAGTGTGTTGAGTTCTTTTACGTGCAGA
GGTTTGACGCTTGAGGCTTACGCCCGAAGCTCCCCCAGGAAGAGCCTCAC
TTTCAACTTGCGTGAGAGAGTTAACCTCCAAACCTTCTTCATCTTGTTAC
AAGCCTGCCAGGCTGCTGCTTATCTTGCTGCTATGTCCCTTGCTGTACTT
TCCATTCTGGACCCCAGGTACTTAAAGTCATTTACCTCCTCCAAGGCAGT
ACCATCGCTTGTCTTGAGGCAGTAAGGGGTTGGAATGTTAAAGGGCATAA
ACTTTGTTTTGCCAGCGTTCATGCAGAGACCAACCTTGCCCACTGAGCTC
TCCACACACCCAAGCAGTTGCTGAGCTTGTTGAATTGCCTCTGATATTAA
CGCAATGTCATCAGCGAAATCCAAATCAGTCACTGTCTTAGGGCCAACTC
TTCTGCTCCTCCTCTTCTCTATCTGCAGACAAAGTTCCTCCTCTCTACCG
TCAATAGCCATCCTAAGTGCATAGTCTGTATCTGTATCTATATAGCCGGT
ACAACCGCCATTAGGCGCAACACACCAGCTTCGCAGGCACGCGGCGCGAC
AGCAGCTGGTTATGTTACAACGAACGGTCTGTTACACATAGTCTTTGCAT
ATCTGACTGCAACCGTTCTTTAAAGCTACTTAGTGAAGATGCTCCTACAG
TACTTGATGACAACGAGTTCCATTCTAATATGGTTCTCGAAAAATGCGAA
TTTTTGAGCACATCAATCCTTGGCTGATAACTCTGGTAATTAAAAGCATG
GCGATTTCAAGTCCTCTTCTGAGCTGGCATTAGATACTTATCAGTCTGTA
CGTCTACAGGTTTATTAGTCATTTTGTACATCATGCAAAGTCTGGACGTT
GTTCTTCTGTATTCAAGTGACATCCATTGCAGATCAACAACAATCACAAA
CAGCCTGATATGGAGCTAGTGTGTCCC Coding sequence (CDS) from alignment at Sc0000461:145116..148392+ >transcript:BL78605_cuf0 ID=transcript:BL78605_cuf0|Name=transcript:BL78605_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=450bp|location=Sequence derived from alignment at Sc0000461:145116..148392+ (Branchiostoma lanceolatum)
ATGTTGTTCAGTTTTTCTGTGTCATATGGTTTTGTCACTACAGTACAGTT
GTATTTGCGTATTAGTTCTTTTGATACTAGGCAAAGTGTTCTGTACTGTC
CCGCTAAACAGACTGAGATGTGCAACAGACTCAGGGAGGAACAGGCTGGA
TTCCGACCCAACAGGTCCTGCAGTGATCAAATATTCACATTACGAAACAT
TATTGAACAGAGTCTTGAGGTCCAAAGACCAGTATCCTTAAACTTTATTG
ACTTTAAAAAAGCACATAGAATCAATACTGAGAATCAGTACTCAGAATCA
GTACTCAGAACATATGGTACACATGAAAGGTTCACAGACATCTTACGAGG
GATCAAGTTGTGTGAAGGTCGGCTCAGCTATATTGACAGCTTTGATAAAG
TCACTGCAGTAAGACAGGGGTGTGTTCTATCCCATCTGTTGTCACCATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000461 | genome | Sc0000461:145116..148392 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL78605_cuf0 |
| Biotype | protein_coding |
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