|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL78557_cuf1 >transcript:BL78557_cuf1-protein ID=transcript:BL78557_cuf1-protein|Name=transcript:BL78557_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=464bp
MEASYSCPDCAFTANRDLVLQVLKHFFNCTSFRCIQDITCGHSLRPSTST
PQTQQEYSNSGQNNSRHDNKSTKETTVLPVQLEFVAAKVSSENADYLYSP
HSNTSTTSSSRATNDFNFQSVNSNRSNVRENFTNKEASSMDVLEHCSEKI
LDEQFNTDSTENMQSETGRDITLNSQSKQTVPCKVESYFSLKPDYNAPSI
VCPSRESIASEKNDYGSTAVSGQDLSMATFHDSVPTDTARSDTLMQVQVK
VEPNSDEYDHYSTGLLGGSSTEGLHTVSVTQTELPPDSSAYQSAIPSAVG
SSCWDSIQQLHRDTVNTDAPTSAAGGRVPANSQVLHSGQQCTPAAQVTRC
PVCRIAYKDRRALTTHLKLQHPNHIDHTFQCKECNKTFGYKRNLLVHMKE
QHLEAGQEFPCYECQKMYKTKRALKEHLRTHTNHKKYVCDMCGKCLKTMS
GLKGHYVHIHNRYY Run BLAST on NCBI mRNA from alignment at Sc0000055:60041..63002- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL78557_cuf1 ID=transcript:BL78557_cuf1|Name=transcript:BL78557_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2962bp|location=Sequence derived from alignment at Sc0000055:60041..63002- (Branchiostoma lanceolatum)
CAAGTGAATATCAGGGCAAAGGTCATCCCAGGCCTGGGTCATCCTGTGTT
TCAGTACAACCTGGCAAGAAAAATATCAAATTTCGTAAAACTGCTAAGTC
TATAGCTTTGTTAAAGATCTTCATTCGTCAGCTGAGATCCCAGATAAGAC
AGTTGATAGGTAGGTTTCTCTACTTGTGCGTTTCTTGGTTTAGGACAACG
TCTTCTTGCTCGAAGGGGGAGGGGGGCATATTTGTTCACTGTGCACTGTG
TTAGGATCAGGATTTGGTTCTACTGGGCGTTTCTACCCATAGTCGTTTCT
CTCCAGGTCGTTACCTCCTTTTTGCTTTGTGTAAGTTGATATAATCTATG
AAATGCTACAATCAGTACCGGCCTAGTTACGTATAAAAGTAAAATTCGCC
GTTGTAAAATTTTGAGACAAATACCGCATCCTGACACACTTCCGTTCTGA
ATTCCCCTTGGTTTCTAGTTTCTAGGCCAAAACCTGATCCAAAGCTCATA
ATGTTGTATAGATGATATACAACCCCTCGTTGTCTCTCATAGGATTCTGT
CCCCATATAAACTCAGAATGAGTAAGAGAGAGATAGAGAGATGAGATTGA
GTTGACATGTGGATGAAACATTCTGTACCCAAATGTACCTGTGAAACATG
CTGTGTTGTACCAAGAATTAACAAATGTCTCTTATGTCTATTTCAGCTGT
TCACTTTCCAGAATACATTACCCGAGTCATATCTCTTTACAATGGAGGCG
TCGTACAGCTGTCCAGACTGTGCCTTCACTGCCAACAGGGACCTTGTACT
GCAGGTGCTCAAGCATTTCTTCAACTGCACATCCTTCAGGTGCATCCAGG
ATATCACCTGCGGCCACAGCCTCAGACCCTCCACATCTACCCCCCAAACA
CAACAAGAATACAGCAACAGCGGTCAGAACAACAGCCGCCATGATAACAA
GTCAACAAAAGAAACAACAGTTTTGCCTGTACAGTTAGAATTTGTTGCAG
CAAAAGTTTCCTCAGAAAATGCTGACTACCTTTATAGTCCACATAGCAAC
ACTAGTACTACTAGTAGTAGTAGAGCTACAAATGACTTCAACTTTCAGTC
AGTCAATAGCAATAGGTCCAACGTTAGAGAGAATTTCACTAACAAAGAAG
CTTCTTCAATGGACGTATTAGAACATTGTTCCGAGAAAATCCTAGATGAA
CAGTTTAACACAGATAGCACAGAAAACATGCAGTCAGAAACTGGTAGAGA
CATAACGCTGAATAGTCAAAGCAAACAGACTGTCCCTTGTAAGGTTGAAA
GCTACTTTTCTCTCAAGCCTGACTACAATGCCCCTTCTATAGTATGCCCA
TCACGGGAAAGCATTGCATCCGAAAAAAATGACTATGGATCAACAGCAGT
GTCAGGTCAGGACTTGAGTATGGCAACGTTTCATGACTCTGTTCCTACAG
ACACAGCTAGAAGTGACACACTGATGCAAGTGCAAGTTAAAGTAGAGCCA
AACAGTGATGAGTATGATCATTACAGCACAGGGTTACTGGGAGGTAGCTC
GACAGAGGGACTACACACCGTAAGTGTAACACAGACAGAACTCCCTCCTG
ACAGCAGTGCCTACCAAAGTGCCATCCCATCTGCTGTGGGTAGCAGCTGC
TGGGACAGTATTCAGCAGCTACATAGGGACACAGTCAACACAGATGCTCC
AACATCTGCTGCAGGTGGACGAGTGCCTGCCAACTCTCAGGTGCTGCACA
GTGGTCAACAGGTGTGTTTTTGACTAAGACTCTGGCTATACAAACTTATT
TCATCCAGATAGTTTTTGTCTGGCTGTGAATACAAATCTTTTTCTTACTT
TCTGTCTGTTGTCTTTAGACATCAATATTCAGTAACAAGAATTTTGAAAA
AAAATTCCAATAAAAATATTATCTAAATCTTCACTCCCTTTCCATTATAG
CGTCTTGAAGAATTGACAAATTTTTCTAGTACTGAGCTTGGACACTTCTA
ATTTTGGAATCAAATGTGATAATGGTGGAGAGTAGTAGGACAGAAATAGC
TATAAATAAAGGTTTTGTATCATTTTTGGAGCCTCACTGAAGCTTTTTTT
TTCCTAGGTGCAGTGTACACCTGCAGCACAGGTGACGAGGTGTCCTGTCT
GTCGCATCGCCTACAAGGACCGAAGAGCCCTAACCACGCACCTTAAACTT
CAGCACCCCAATCACATAGACCACACCTTCCAGTGTAAGGAATGTAACAA
GACATTTGGATACAAGAGGAACCTGTTAGTTCACATGAAGGAGCAGCATC
TAGAGGCAGGACAAGAGTTTCCTTGTTATGAGTGTCAGAAGATGTACAAG
ACTAAAAGAGCACTGAAAGAACACCTAAGGACACATACAAACCACAAAAA
GTATGTCTGTGACATGTGTGGAAAGTGCTTAAAAACTATGTCAGGGCTAA
AGGGCCACTATGTGCACATTCACAACAGATACTACTAGTTCTTAGTGGAT
GTTTATTTTATGTACATTTGTATTTTTTCCTACCTATTTTCCTAAACTTA
TTCAGCTGACACGTCAGAAATTAAATGGCATGTTGTAATCTTTGTGTTCT
TTATTGCATTTCGATTGGTGTACCAGAGGTCCTTTCCCGGAACTTTTGGT
CGTTTATAACGATGTTACATTAGTGCCACCACCACCCTAGCCACCCCCCC
CCCTCCACACAAACAAATTCCCTTCCTGATATGATAGATCTTCAGGGTAT
TTTTCTCAACTCTGGTGTCTTTTCGTTGATTCCTTTATGGTTATTTATGA
GTGTCTACTACCACGTCAAAGCTACATTTATTCAAACATGCCCTGAGTCA
ACAGTACATCGATTGTATTGGCAAGGAAACAGCGCCATCTAGCGGAACCA
GCTAGCATTTAAGCCCAGGACCTACAAGTAAACGAGTATTCCTTGAAGAA
GAAACATGATGG Coding sequence (CDS) from alignment at Sc0000055:60041..63002- >transcript:BL78557_cuf1 ID=transcript:BL78557_cuf1|Name=transcript:BL78557_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2790bp|location=Sequence derived from alignment at Sc0000055:60041..63002- (Branchiostoma lanceolatum)
ATGGAGGCGTCGTACAGCTGTCCAGACTGTGCCTTCACTGCCAACAGGGA
CCTTGTACTGCAGGTGCTCAAGCATTTCTTCAACTGCACATCCTTCAGGT
GCATCCAGGATATCACCTGCGGCCACAGCCTCAGACCCTCCACATCTACC
CCCCAAACACAACAAGAATACAGCAACAGCGGTCAGAACAACAGCCGCCA
TGATAACAAGTCAACAAAAGAAACAACAGTTTTGCCTGTACAGTTAGAAT
TTGTTGCAGCAAAAGTTTCCTCAGAAAATGCTGACTACCTTTATAGTCCA
CATAGCAACACTAGTACTACTAGTAGTAGTAGAGCTACAAATGACTTCAA
CTTTCAGTCAGTCAATAGCAATAGGTCCAACGTTAGAGAGAATTTCACTA
ACAAAGAAGCTTCTTCAATGGACGTATTAGAACATTGTTCCGAGAAAATC
CTAGATGAACAGTTTAACACAGATAGCACAGAAAACATGCAGTCAGAAAC
TGGTAGAGACATAACGCTGAATAGTCAAAGCAAACAGACTGTCCCTTGTA
AGGTTGAAAGCTACTTTTCTCTCAAGCCTGACTACAATGCCCCTTCTATA
GTATGCCCATCACGGGAAAGCATTGCATCCGAAAAAAATGACTATGGATC
AACAGCAGTGTCAGGTCAGGACTTGAGTATGGCAACGTTTCATGACTCTG
TTCCTACAGACACAGCTAGAAGTGACACACTGATGCAAGTGCAAGTTAAA
GTAGAGCCAAACAGTGATGAGTATGATCATTACAGCACAGGGTTACTGGG
AGGTAGCTCGACAGAGGGACTACACACCGTAAGTGTAACACAGACAGAAC
TCCCTCCTGACAGCAGTGCCTACCAAAGTGCCATCCCATCTGCTGTGGGT
AGCAGCTGCTGGGACAGTATTCAGCAGCTACATAGGGACACAGTCAACAC
AGATGCTCCAACATCTGCTGCAGGTGGACGAGTGCCTGCCAACTCTCAGG
TGCTGCACAGTGGTCAACAGTGTACACCTGCAGCACAGGTGACGAGGTGT
CCTGTCTGTCGCATCGCCTACAAGGACCGAAGAGCCCTAACCACGCACCT
TAAACTTCAGCACCCCAATCACATAGACCACACCTTCCAGTGTAAGGAAT
GTAACAAGACATTTGGATACAAGAGGAACCTGTTAGTTCACATGAAGGAG
CAGCATCTAGAGGCAGGACAAGAGTTTCCTTGTTATGAGTGTCAGAAGAT
GTACAAGACTAAAAGAGCACTGAAAGAACACCTAAGGACACATACAAACC
ACAAAAAGTATGTCTGTGACATGTGTGGAAAGTGCTTAAAAACTATGTCA
GGGCTAAAGGGCCACTATGTGCACATTCACAACAGATACTACTAGATGGA
GGCGTCGTACAGCTGTCCAGACTGTGCCTTCACTGCCAACAGGGACCTTG
TACTGCAGGTGCTCAAGCATTTCTTCAACTGCACATCCTTCAGGTGCATC
CAGGATATCACCTGCGGCCACAGCCTCAGACCCTCCACATCTACCCCCCA
AACACAACAAGAATACAGCAACAGCGGTCAGAACAACAGCCGCCATGATA
ACAAGTCAACAAAAGAAACAACAGTTTTGCCTGTACAGTTAGAATTTGTT
GCAGCAAAAGTTTCCTCAGAAAATGCTGACTACCTTTATAGTCCACATAG
CAACACTAGTACTACTAGTAGTAGTAGAGCTACAAATGACTTCAACTTTC
AGTCAGTCAATAGCAATAGGTCCAACGTTAGAGAGAATTTCACTAACAAA
GAAGCTTCTTCAATGGACGTATTAGAACATTGTTCCGAGAAAATCCTAGA
TGAACAGTTTAACACAGATAGCACAGAAAACATGCAGTCAGAAACTGGTA
GAGACATAACGCTGAATAGTCAAAGCAAACAGACTGTCCCTTGTAAGGTT
GAAAGCTACTTTTCTCTCAAGCCTGACTACAATGCCCCTTCTATAGTATG
CCCATCACGGGAAAGCATTGCATCCGAAAAAAATGACTATGGATCAACAG
CAGTGTCAGGTCAGGACTTGAGTATGGCAACGTTTCATGACTCTGTTCCT
ACAGACACAGCTAGAAGTGACACACTGATGCAAGTGCAAGTTAAAGTAGA
GCCAAACAGTGATGAGTATGATCATTACAGCACAGGGTTACTGGGAGGTA
GCTCGACAGAGGGACTACACACCGTAAGTGTAACACAGACAGAACTCCCT
CCTGACAGCAGTGCCTACCAAAGTGCCATCCCATCTGCTGTGGGTAGCAG
CTGCTGGGACAGTATTCAGCAGCTACATAGGGACACAGTCAACACAGATG
CTCCAACATCTGCTGCAGGTGGACGAGTGCCTGCCAACTCTCAGGTGCTG
CACAGTGGTCAACAGTGTACACCTGCAGCACAGGTGACGAGGTGTCCTGT
CTGTCGCATCGCCTACAAGGACCGAAGAGCCCTAACCACGCACCTTAAAC
TTCAGCACCCCAATCACATAGACCACACCTTCCAGTGTAAGGAATGTAAC
AAGACATTTGGATACAAGAGGAACCTGTTAGTTCACATGAAGGAGCAGCA
TCTAGAGGCAGGACAAGAGTTTCCTTGTTATGAGTGTCAGAAGATGTACA
AGACTAAAAGAGCACTGAAAGAACACCTAAGGACACATACAAACCACAAA
AAGTATGTCTGTGACATGTGTGGAAAGTGCTTAAAAACTATGTCAGGGCT
AAAGGGCCACTATGTGCACATTCACAACAGATACTACTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000055 | genome | Sc0000055:60041..63002 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL78557_cuf1 |
| Biotype | protein_coding |
|
