transcript:BL78506_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL78506_cuf0
Unique Nametranscript:BL78506_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL78506_cuf0

>transcript:BL78506_cuf0-protein ID=transcript:BL78506_cuf0-protein|Name=transcript:BL78506_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=430bp
MRKNFSDXYEKKIFRFLWSGGPERVKRKIVYNTYDYGGLKLVNLEAFNLS
LKAAWIPRLYLNENWFCRRMLNHSLLFRYGIFPFLQLTEAHFHNVVPKHA
YLSTFFEEVMLAWLKAQKKPPDNKWEVMRQLLWLNSNLLIDRLPFFWEAF
SQRGIMFIQDLLDNDGTFLTYRSFIFKYGRICNEFRYIQLLSSIPLEWKH
MIKDIFLCATVTVPVLKYLKWLKGVKINRELYRFYLVDRKFVDFHCKAQQ
YWMDIFDEQIQWDLVYSLIYITTIDSYLRAFQYKLVHNFLALRNKLYRWN
LSDDSLCSYCNSEEETPLHIFHHCSSLVKFWGEVKNWIQNHVNASVILAP
RNIILGTSVNCPIVINTLLLIAKLYLFKNRHVKLATLDGYIAYVKHYHKV
EYISAYXMVFSLSSNLRKLISTMLSPSMLI
Run BLAST on NCBI

mRNA from alignment at Sc0000009:4037998..4041526-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL78506_cuf0 ID=transcript:BL78506_cuf0|Name=transcript:BL78506_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3529bp|location=Sequence derived from alignment at Sc0000009:4037998..4041526- (Branchiostoma lanceolatum)
AAAAACTTCTCTACAATTTCTGGTTTGGTTCCAAATTTCGATAAGTGTAT
AATTGTCAGATTGGGACCACTAAAATACACAAACTTTCAACTACCATGTA
CTTTTCCTGTTAAATGGTCAGATGGGTCAGTCAACCTTTTGGGAATTTAT
ATTCCCAAACATATGAGAACTCTAATTGAAGATAATTACAACAAAAAGTT
GCAGAAAGTTGATAAAATAATCCAGCCATGGAAAGGAAAAATCCTTACCT
TGTATGGAAAAGTCACACTGTTAAATACTTTAGTGGTTTCTCAATTTACT
TATCTTTTTATGTCTTTGCCATCTCCAGACACTGAGTTTTTTATTAAAGA
TATATGAGAAAAAATTTTTCAGATTTCTATGGTCAGGTGGGCCAGAACGG
GTTAAACGAAAAATTGTGTATAACACGTATGATTATGGTGGACTGAAACT
TGTCAATCTAGAAGCCTTTAATTTATCATTAAAGGCGGCTTGGATCCCTA
GATTATATTTGAACGAAAATTGGTTTTGTAGAAAGATGTTGAATCATAGC
TTACTTTTTAGGTATGGTATTTTCCCTTTCCTCCAACTTACGGAAGCTCA
TTTCCACAATGTTGTCCCCAAGCATGCTTATTTAAGTACATTCTTTGAAG
AGGTCATGTTAGCTTGGCTAAAGGCCCAGAAGAAACCACCCGATAACAAA
TGGGAAGTCATGAGACAATTGCTTTGGTTGAATTCTAACTTACTTATTGA
TAGACTACCGTTTTTCTGGGAGGCCTTTAGCCAAAGGGGAATTATGTTTA
TTCAGGATTTACTGGATAATGATGGAACTTTTCTGACGTACAGATCATTT
ATTTTTAAATATGGAAGAATTTGTAATGAGTTTAGATATATACAACTGTT
ATCTAGCATTCCACTTGAATGGAAACATATGATTAAGGATATTTTTCTCT
GTGCAACAGTTACAGTGCCTGTGTTAAAATATCTCAAGTGGTTGAAAGGG
GTTAAAATAAATAGGGAATTATATCGTTTTTATTTAGTTGATAGAAAATT
TGTTGATTTTCACTGTAAAGCCCAACAATACTGGATGGATGTCTTCGATG
ANATTGAAGATAATTACAACAAAAAGTTGCAGAAAGTTGATAAAATAATC
CAGCCATGGAAAGGAAAAATCCTTACCTTGTATGGAAAAGTCACACTGTT
AAATACTTTAGTGGTTTCTCAATTTACTTATCTTTTTATGTCTTTGCCAT
CTCCAGACACTGAGTTTTTTTTTAAAGATATATGAGAAAAAATTTTTCAG
ATNTATATGAGAAAAAAATTTTCAGATTTCTATGGTCAGGTGGGCCAGAA
CGGGTTAAACGAAAAATTGTGTATAACACGTATGATTATGGTGGACTGAA
ACTTGTCAATCTAGAAGCCTTTAATTTATCATTAAAGGCGGCTTGGATCC
CTAGATTATATTTGAACGAGAATTGGTTTTGTAGAAGGATGTTGAATCAT
AGCTTACTTTTTAGGTATGGTATTTTCCCTTTCCTCCAACTTACGGAAGC
TCATTTCCACAATGTTGTCCCCAAGCATGCTTATTTAAGTACATTCTTTG
AAGAGGTCATGTTAGCTTGGCTAAAGGCCCAGAAGAAACCACCCGATAAC
AAATGGGAAGTCATGAGACAATTGCTTTGGTTGAATTCTAACTTACTTAT
TGATAGACTACCGTTTTTCTGGGAGGCCTTTAGCCAAAGGGGAATTATGT
TTATTCAGGATTTACTGGATAATGATGGAACTTTTCTGACGTACAGATCA
TTTATTTTTAAATATGGAAGAATTTGTAATGAGTTTAGATATATACAACT
GTTATCTAGCATTCCACTTGAATGGAAACATATGATTAAGGATATTTTTC
TCTGTGCAACAGTTACAGTGCCTGTGTTAAAATATCTCAAGTGGTTGAAA
GGGGTTAAAATAAATAGGGAATTATATCGTTTTTATTTAGTTGATAGAAA
ATTTGTTGATTTTCACTGTAAAGCCCAACAATACTGGATGGATATCTTCG
ATGAACAGATACAATGGGATTTGGTTTACAGTTTAATTTACATAACAACT
ATTGATTCCTATCTAAGAGCATTTCAATACAAATTAGTACACAATTTTCT
CGCTTTAAGAAATAAGCTGTACAGATGGAACTTATCCGACGATTCACTTT
GTTCTTATTGTAACAGCGAGGAGGAAACTCCTCTGCATATTTTTCACCAT
TGTTCTTCACTCGTAAAGTTTTGGGGAGAGGTAAAAAATTGGATACAAAA
CCATGTCAATGCCTCTGTTATACTTGCACCTAGAAATATCATATTAGGTA
CTTCTGTTAATTGTCCTATTGTAATTAATACGTTGTTGCTAATTGCAAAA
CTTTATTTATTTAAAAACAGACATGTAAAATTAGCTACGTTAGATGGATA
TATTGCCTATGTTAAGCATTACCACAAAGTGGAATATATTAGTGCTTATA
ANATGGTATTTTCCCTTTCCTCCAACTTACGGAAGCTCATTTCCACAATG
TTGTCCCCAAGCATGCTTATTTAAGTACATTCTTTGAAGAGGTCATGTTA
GCTTGGCTAAAGGCCCAGAAGAAACCACCCGATAACAAATGGGAAGTCAT
GAGACAATTGCTTTGGTTGAATTCTAACTTACTTATTGATAGACTACCGT
TTTTCTGGGAGGCCTTTAGCCAAAGGGGAATTATGTTTATTCAGGATTTA
CTGGATAATGATGGAACTTTTCTGACGTACAGATCATTTATTTTTAAATA
TGGAAGAATTTGTAATGAGTTTAGATATATACAACTGTTATCTAGCATTC
CACTTGAATGGAAACATATGATTAAGGATATTTTTCTCTGTGCAACAGTT
ACAGTGCCTGTGTTAAAATATCTCAAGTGGTTGAAAGGGGTTAAAATAAA
TAGGGAATTATATCGTTTTTATTTAGTTGATAGAAAATTTGTTGATTTTC
ACTGTAAAGCCCAACAATACTGGATGGATATCTTCGATGAACAGATACAA
TGGGATTTGGTTTACAGTTTAATTTACATAACAACTATTGATTCCTATCT
AAGAGCATTTCAATACAAATTAGTACACAATTTTCTCGCTTTAAGAAATA
AGCTGTACAGATGGAACTTATCCGACGATTCACTTTGTTCTTATTGTAAC
AGCGAGGAGGAAACTCCTCTGCATATTTTTCACCATTGTTCTTCACTCGT
AAAGTTTTGGGGAGAGGTAAAAAATTGGATACAAAACCATGTCAATGCCT
CTGTTATACTTGCACCTAGAAATATCATATTAGGTACTTCTGTTAATTGT
CCTATTGTAATTAATACGTTGTTGCTAATTGCAAAACTTTATTTATTTAA
AAACAGACATGTAAAATTAGCTACGTTAGATGGATATATTGCCTATGTTA
AGCATTACCACAAAGTGGAATATATTAGTGCTTATAATTCTGGAAAAATT
GATAAACACCTGTTTAAGTGGGGATCTTT

Coding sequence (CDS) from alignment at Sc0000009:4037998..4041526-

>transcript:BL78506_cuf0 ID=transcript:BL78506_cuf0|Name=transcript:BL78506_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1293bp|location=Sequence derived from alignment at Sc0000009:4037998..4041526- (Branchiostoma lanceolatum)
ATGAGAAAAAATTTTTCAGATNTATATGAGAAAAAAATTTTCAGATTTCT
ATGGTCAGGTGGGCCAGAACGGGTTAAACGAAAAATTGTGTATAACACGT
ATGATTATGGTGGACTGAAACTTGTCAATCTAGAAGCCTTTAATTTATCA
TTAAAGGCGGCTTGGATCCCTAGATTATATTTGAACGAGAATTGGTTTTG
TAGAAGGATGTTGAATCATAGCTTACTTTTTAGGTATGGTATTTTCCCTT
TCCTCCAACTTACGGAAGCTCATTTCCACAATGTTGTCCCCAAGCATGCT
TATTTAAGTACATTCTTTGAAGAGGTCATGTTAGCTTGGCTAAAGGCCCA
GAAGAAACCACCCGATAACAAATGGGAAGTCATGAGACAATTGCTTTGGT
TGAATTCTAACTTACTTATTGATAGACTACCGTTTTTCTGGGAGGCCTTT
AGCCAAAGGGGAATTATGTTTATTCAGGATTTACTGGATAATGATGGAAC
TTTTCTGACGTACAGATCATTTATTTTTAAATATGGAAGAATTTGTAATG
AGTTTAGATATATACAACTGTTATCTAGCATTCCACTTGAATGGAAACAT
ATGATTAAGGATATTTTTCTCTGTGCAACAGTTACAGTGCCTGTGTTAAA
ATATCTCAAGTGGTTGAAAGGGGTTAAAATAAATAGGGAATTATATCGTT
TTTATTTAGTTGATAGAAAATTTGTTGATTTTCACTGTAAAGCCCAACAA
TACTGGATGGATATCTTCGATGAACAGATACAATGGGATTTGGTTTACAG
TTTAATTTACATAACAACTATTGATTCCTATCTAAGAGCATTTCAATACA
AATTAGTACACAATTTTCTCGCTTTAAGAAATAAGCTGTACAGATGGAAC
TTATCCGACGATTCACTTTGTTCTTATTGTAACAGCGAGGAGGAAACTCC
TCTGCATATTTTTCACCATTGTTCTTCACTCGTAAAGTTTTGGGGAGAGG
TAAAAAATTGGATACAAAACCATGTCAATGCCTCTGTTATACTTGCACCT
AGAAATATCATATTAGGTACTTCTGTTAATTGTCCTATTGTAATTAATAC
GTTGTTGCTAATTGCAAAACTTTATTTATTTAAAAACAGACATGTAAAAT
TAGCTACGTTAGATGGATATATTGCCTATGTTAAGCATTACCACAAAGTG
GAATATATTAGTGCTTATAANATGGTATTTTCCCTTTCCTCCAACTTACG
GAAGCTCATTTCCACAATGTTGTCCCCAAGCATGCTTATTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL78506gene:BL78506Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL78506_cuf0-E1BL78506_cuf0-E1-1564476830-92114Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL78506_cuf0transcript:BL78506_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000009genomeSc0000009:4037998..4041526 -
Properties
Property NameValue
Transcript idBL78506_cuf0
Biotypeprotein_coding