transcript:BL77446_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL77446_cuf0
Unique Nametranscript:BL77446_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL77446_cuf0

>transcript:BL77446_cuf0-protein ID=transcript:BL77446_cuf0-protein|Name=transcript:BL77446_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=117bp
EFAYELSVPLADILNSSLQLGTVPDEWKNATVVPVPKTKPPSINDLRPIS
LTSLLSKVAEHFICKWAMSDILPHIDTQQFGGIKGRSTTHCLLDMTNSIF
KACDKPNAFCSLVSTDY
Run BLAST on NCBI

mRNA from alignment at Sc0000036:1887849..1888203-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL77446_cuf0 ID=transcript:BL77446_cuf0|Name=transcript:BL77446_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=355bp|location=Sequence derived from alignment at Sc0000036:1887849..1888203- (Branchiostoma lanceolatum)
GAGAGTTCGCGTACGAACTGAGTGTACCACTTGCAGATATACTCAATTCT
TCACTCCAGCTAGGCACTGTGCCAGACGAATGGAAAAACGCCACCGTTGT
TCCTGTCCCGAAGACCAAGCCCCCGTCCATTAACGACCTCCGCCCTATTT
CGTTAACTTCACTGTTGAGCAAAGTAGCAGAACATTTCATCTGTAAGTGG
GCTATGTCCGACATCCTTCCTCACATTGATACCCAACAATTTGGAGGTAT
CAAGGGTAGATCCACAACCCACTGCCTTTTAGACATGACAAACTCTATAT
TCAAGGCTTGTGACAAACCTAATGCCTTCTGCTCTTTAGTATCTACTGAT
TACAG

Coding sequence (CDS) from alignment at Sc0000036:1887849..1888203-

>transcript:BL77446_cuf0 ID=transcript:BL77446_cuf0|Name=transcript:BL77446_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=351bp|location=Sequence derived from alignment at Sc0000036:1887849..1888203- (Branchiostoma lanceolatum)
GAGTTCGCGTACGAACTGAGTGTACCACTTGCAGATATACTCAATTCTTC
ACTCCAGCTAGGCACTGTGCCAGACGAATGGAAAAACGCCACCGTTGTTC
CTGTCCCGAAGACCAAGCCCCCGTCCATTAACGACCTCCGCCCTATTTCG
TTAACTTCACTGTTGAGCAAAGTAGCAGAACATTTCATCTGTAAGTGGGC
TATGTCCGACATCCTTCCTCACATTGATACCCAACAATTTGGAGGTATCA
AGGGTAGATCCACAACCCACTGCCTTTTAGACATGACAAACTCTATATTC
AAGGCTTGTGACAAACCTAATGCCTTCTGCTCTTTAGTATCTACTGATTA
C
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL77446gene:BL77446Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL77446_cuf0-E1BL77446_cuf0-E1-1564476830-192940Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL77446_cuf0transcript:BL77446_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000036genomeSc0000036:1887849..1888203 -
Properties
Property NameValue
Transcript idBL77446_cuf0
Biotypeprotein_coding