transcript:BL76928_cuf2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL76928_cuf2
Unique Nametranscript:BL76928_cuf2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL76928_cuf2

>transcript:BL76928_cuf2-protein ID=transcript:BL76928_cuf2-protein|Name=transcript:BL76928_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=269bp
ASRSALRSKKLGRRIQRFMVILVVFATIHFFLQRSPRLEVQTKVMPPVPR
HIPAIHRRDTSIQSRNRTPRPTKVPMPASVASNSSWTFSAEELRKFRNIT
AKLHPDVRLQTHKLGIWPVTCPKKGRRKRKSCKPPPFTYNVSDHTTCAVV
GNGGILLESHCGAEIDSKDYVIRMNLPAIRGFERDVGRRTNLTVLNVSTP
NRIRNSSLLENRTEDVYESRLRDINGTVLIASAREHAALETAMQQYQNQF
SFVLLTSRRSFKVSRHIRR
Run BLAST on NCBI

mRNA from alignment at Sc0000099:971308..973959-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL76928_cuf2 ID=transcript:BL76928_cuf2|Name=transcript:BL76928_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=2652bp|location=Sequence derived from alignment at Sc0000099:971308..973959- (Branchiostoma lanceolatum)
CGCCTCTAGATCTGCCCTAAGGTCCAAGAAGCTTGGAAGAAGAATTCAAC
GCTTTATGGTTATCCTAGTCGTCTTCGCCACGATTCATTTCTTTCTACAG
AGGTCACCAAGGTATTTCTTACCTTTGCCATTACCCATAGATATATACAA
AGGGTAGTTTGAAACTACATGTGCCCCAATTAAGATACGATCACATTTCT
CGTGCGATGTTTTTGCCGTACGATTTACAGGGAGGATATGGCGACGATCG
ACGACCTAGTTCGACAACTTTTTTCCGACACAAGACGACTGTGTTGTGTA
ACCTACGACCACGACCATCCAAAGAACCATGTTGCCGTACTAGTAAATGT
CGTTCGACAAGGTCTTAAGTTAAGAAACACGCTGGTGTTGGGAAAGAAGT
GGTCAAAAACTACACCTCCATTTTTCATGTCCGAGTAATAAGTTGCTAGC
AGCTACAACTAATTATAAGCATTGGCAGAACCAAGGATGTCAAAGTTCTA
ATATCAGAAAATTTCCAAACATATAACGTCAGTGCCTGGAACTGATGACT
ACGGGTTCGAGATTTTTGTCTAGCTAGCCTGCATATCTGTGTTGATTTAC
TCATATCTATCCATATACATGTACATCCATGTACAGGTTAGTTCATTTGT
ATCCACATGACAGTTTGCATGTATAGATGTAACGTTAGTAGACCCGAGAC
TGGACTGCCAAAGAAGACTGTTTCTATGTAGAGATGTAACGTTAATGAAT
GAATGAAAGACCTTTATTGTGCATTCATATCCCGAGGGGCTAGGTACAGG
TCGTCTAACTCAACACATGGAACATACAAGGACATAAATACAACAATACA
AGCTGTAAACATAAAGAGTAGACAAACGTGTTATTAAACTAAGCTAGTCC
AGTAGAGTCGACTTCTTCTCGCTTCATTGTACATGTGTAAATGTATGAAC
AGACAATATTTCTTATACAAGGATTATCCAGGCGTAATAAAAATATGAAT
TTGTCTGTTGCATTTAGATGTTCGAAATATGGGAATTTTTCTTTGATAAG
GTTAAAAAGTACACTTCTTTCGCTATCGTATAATTTACAATATAGGACGA
AATGTTGCACATCTTCTACTTGATTTAAATTACAATGTTGACAATGTCTA
TGTTAATAGCCCTTACGAAAGTCGCTGTACTTTTGTTGTGTCAATGAAGA
TTTCACTTTGTAACCAGCTTTCCAACGTCCCACTAGACTGGAGGTACAGA
CAAAGGTAATGCCGCCTGTTCCACGCCACATCCCAGCAATCCATCGCAGA
GACACCAGTATTCAGTCCCGCAACAGAACACCGCGTCCTACAAAGGTTCC
CATGCCTGCTTCTGTAGCATCGAACTCTTCCTGGACATTCAGTGCTGAAG
AGTTAAGAAAGTTCAGGTCCGTCCTAACTGCACACTAGACATACCGCCGT
GCGAGTTACATGTATTTCTGTGGGTGGTCAAATGGTTCAATTAATTTCCT
TTCAACTAATGTCAAATCAATTCAATCTTTATTGAACAAACTCGCAGACA
TACAGACTCTGAATTCTGGTGTTCTGACAATATCTCACGGTAAGCTTATA
CATTAACAAAAGTCGACAAATAAGCTAAAATCTGTGATAGATACCACTAA
AACATTTCAACATTCATTAACAATCACGTCACATTATCATTATTCAATAC
ATAAGTCTGTGTCGTAATATCTAGCATGGGTAGCAATATGATTTCGAAAA
CACGAAAGGTGTCCAGATACATTTACATGTAATTATAGAGATTTTTTTCC
ATTACATCAACCATAATGATTTTGTTTCAGAAATATAACAGCGAAACTAC
ATCCAGACGTGCGGCTTCAGACACACAAGTTGGGAATCTGGCCGGTGACC
TGTCCAAAGAAAGGAAGAAGAAAACGAAAATCTTGCAAGCCGCCGCCGTT
CACGTATAACGTTAGCGATCACACAACATGTGCGGTTGTAGGCAATGGAG
GCATCCTACTGGAAAGCCACTGTGGCGCTGAAATAGATTCCAAAGACTAC
GTCATACGAATGAACCTTCCGGCCATCAGGGGATTCGAAAGAGACGTTGG
GCGAAGGACTAACCTGACAGTTTTAAACGTTAGCACACCCAATCGGATAA
GAAACTCATCTCTTTTGGAAAACAGGACTGAGGATGTATACGAGAGTCGT
CTAAGAGACATCAATGGCACAGTTCTAATTGCTAGTGCAAGAGAGCATGC
TGCACTGGAGACGGCAATGCAGCAGTATCAAAATCAGTTTTCTTTCGTTT
TGCTGACCAGTAGACGAAGTTTTAAAGTATCCCGTCATATTCGCAGGTAA
ATTAGAATGTTACACATGCCTTGTTCTTTTAATTGCCCTTATTTGTCTCC
TGTAAGATTTTTTTGTAGTTGTTGTAGTAGTAGTATCCAGAATCGGTTGG
AAACACATTTGGGGAAAATTTGCTAAGACGTTTAGAAAACAAACACTGGA
AATTAGTACTGGAAATAAGTACTTGCATCAGCCAATACGGACCTTTTCGC
GTTTTAGTGGAGTTTATGTCGCAATGCAAACCTGTAATAACACATTTATT
CCTGACCCAACAAATCACAGTCATGGATCTCAGCACCATTATTATTCTCT
TT

Coding sequence (CDS) from alignment at Sc0000099:971308..973959-

>transcript:BL76928_cuf2 ID=transcript:BL76928_cuf2|Name=transcript:BL76928_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=2430bp|location=Sequence derived from alignment at Sc0000099:971308..973959- (Branchiostoma lanceolatum)
GCCTCTAGATCTGCCCTAAGGTCCAAGAAGCTTGGAAGAAGAATTCAACG
CTTTATGGTTATCCTAGTCGTCTTCGCCACGATTCATTTCTTTCTACAGA
GGTCACCAAGACTGGAGGTACAGACAAAGGTAATGCCGCCTGTTCCACGC
CACATCCCAGCAATCCATCGCAGAGACACCAGTATTCAGTCCCGCAACAG
AACACCGCGTCCTACAAAGGTTCCCATGCCTGCTTCTGTAGCATCGAACT
CTTCCTGGACATTCAGTGCTGAAGAGTTAAGAAAGTTCAGAAATATAACA
GCGAAACTACATCCAGACGTGCGGCTTCAGACACACAAGTTGGGAATCTG
GCCGGTGACCTGTCCAAAGAAAGGAAGAAGAAAACGAAAATCTTGCAAGC
CGCCGCCGTTCACGTATAACGTTAGCGATCACACAACATGTGCGGTTGTA
GGCAATGGAGGCATCCTACTGGAAAGCCACTGTGGCGCTGAAATAGATTC
CAAAGACTACGTCATACGAATGAACCTTCCGGCCATCAGGGGATTCGAAA
GAGACGTTGGGCGAAGGACTAACCTGACAGTTTTAAACGTTAGCACACCC
AATCGGATAAGAAACTCATCTCTTTTGGAAAACAGGACTGAGGATGTATA
CGAGAGTCGTCTAAGAGACATCAATGGCACAGTTCTAATTGCTAGTGCAA
GAGAGCATGCTGCACTGGAGACGGCAATGCAGCAGTATCAAAATCAGTTT
TCTTTCGTTTTGCTGACCAGTAGACGAAGTTTTAAAGTATCCCGTCATAT
TCGCAGGTAAGCCTCTAGATCTGCCCTAAGGTCCAAGAAGCTTGGAAGAA
GAATTCAACGCTTTATGGTTATCCTAGTCGTCTTCGCCACGATTCATTTC
TTTCTACAGAGGTCACCAAGACTGGAGGTACAGACAAAGGTAATGCCGCC
TGTTCCACGCCACATCCCAGCAATCCATCGCAGAGACACCAGTATTCAGT
CCCGCAACAGAACACCGCGTCCTACAAAGGTTCCCATGCCTGCTTCTGTA
GCATCGAACTCTTCCTGGACATTCAGTGCTGAAGAGTTAAGAAAGTTCAG
AAATATAACAGCGAAACTACATCCAGACGTGCGGCTTCAGACACACAAGT
TGGGAATCTGGCCGGTGACCTGTCCAAAGAAAGGAAGAAGAAAACGAAAA
TCTTGCAAGCCGCCGCCGTTCACGTATAACGTTAGCGATCACACAACATG
TGCGGTTGTAGGCAATGGAGGCATCCTACTGGAAAGCCACTGTGGCGCTG
AAATAGATTCCAAAGACTACGTCATACGAATGAACCTTCCGGCCATCAGG
GGATTCGAAAGAGACGTTGGGCGAAGGACTAACCTGACAGTTTTAAACGT
TAGCACACCCAATCGGATAAGAAACTCATCTCTTTTGGAAAACAGGACTG
AGGATGTATACGAGAGTCGTCTAAGAGACATCAATGGCACAGTTCTAATT
GCTAGTGCAAGAGAGCATGCTGCACTGGAGACGGCAATGCAGCAGTATCA
AAATCAGTTTTCTTTCGTTTTGCTGACCAGTAGACGAAGTTTTAAAGTAT
CCCGTCATATTCGCAGGTAAGCCTCTAGATCTGCCCTAAGGTCCAAGAAG
CTTGGAAGAAGAATTCAACGCTTTATGGTTATCCTAGTCGTCTTCGCCAC
GATTCATTTCTTTCTACAGAGGTCACCAAGACTGGAGGTACAGACAAAGG
TAATGCCGCCTGTTCCACGCCACATCCCAGCAATCCATCGCAGAGACACC
AGTATTCAGTCCCGCAACAGAACACCGCGTCCTACAAAGGTTCCCATGCC
TGCTTCTGTAGCATCGAACTCTTCCTGGACATTCAGTGCTGAAGAGTTAA
GAAAGTTCAGAAATATAACAGCGAAACTACATCCAGACGTGCGGCTTCAG
ACACACAAGTTGGGAATCTGGCCGGTGACCTGTCCAAAGAAAGGAAGAAG
AAAACGAAAATCTTGCAAGCCGCCGCCGTTCACGTATAACGTTAGCGATC
ACACAACATGTGCGGTTGTAGGCAATGGAGGCATCCTACTGGAAAGCCAC
TGTGGCGCTGAAATAGATTCCAAAGACTACGTCATACGAATGAACCTTCC
GGCCATCAGGGGATTCGAAAGAGACGTTGGGCGAAGGACTAACCTGACAG
TTTTAAACGTTAGCACACCCAATCGGATAAGAAACTCATCTCTTTTGGAA
AACAGGACTGAGGATGTATACGAGAGTCGTCTAAGAGACATCAATGGCAC
AGTTCTAATTGCTAGTGCAAGAGAGCATGCTGCACTGGAGACGGCAATGC
AGCAGTATCAAAATCAGTTTTCTTTCGTTTTGCTGACCAGTAGACGAAGT
TTTAAAGTATCCCGTCATATTCGCAGGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL76928gene:BL76928Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL76928_cuf2transcript:BL76928_cuf2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL76928_cuf2-E1BL76928_cuf2-E1-1564476830-300064Branchiostoma lanceolatumexon
BL76928_cuf2-E2BL76928_cuf2-E2-1564476830-300061Branchiostoma lanceolatumexon
BL76928_cuf2-E3BL76928_cuf2-E3-1564476830-300059Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000099genomeSc0000099:971308..973959 -
Properties
Property NameValue
Transcript idBL76928_cuf2
Biotypeprotein_coding