transcript:BL76825_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL76825_cuf0
Unique Nametranscript:BL76825_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL76825_cuf0

>transcript:BL76825_cuf0-protein ID=transcript:BL76825_cuf0-protein|Name=transcript:BL76825_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=99bp
MQGCLQDPSLRPGREICLLVQKKIKSWRQPCLYVSGWADFLQCTPDDHEV
SAAILELTVSEDSHMNRPWQPGERDPPQTDEIIQSFYDEPMNVLKSRCL
Run BLAST on NCBI

mRNA from alignment at Sc0000001:8383384..8384234-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL76825_cuf0 ID=transcript:BL76825_cuf0|Name=transcript:BL76825_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=851bp|location=Sequence derived from alignment at Sc0000001:8383384..8384234- (Branchiostoma lanceolatum)
GATGGATGGATGGATGGATGGATGGATGGATGAAAACTTTATGTAGCTGT
GTGTAAATGACCCCATCCCAAGGCCAGTGGGTGGGGACTGGGTTTTGCCC
TGCTCCAGGGGTTTTGGGGGGCCCTTGGGAGCAAGTTAGGTCCCAAGGGC
CTGAAGAGGGCTCCACCACTTTCTCCCACACTTCCACCCCCATCTTCAGT
TTACCTGTATGCAGGGCTGTCTCCAGGACCCGTCCCTCCGTCCCGGAAGG
GAAATCTGCTTGTTGGTACAGAAAAAAATTAAAAGCTGGAGACAGCCCTG
CCTGTATGTCAGCGGCTGGGCTGATTTTCTTCAGTGCACCCCAGATGATC
ATGAGGTATCAGCGGCCATTTTGGAGCTGACGGTGTCGGAAGACAGCCAC
ATGAATCGTCCATGGCAGCCTGGAGAAAGAGACCCTCCACAAACTGACGA
AATCATTCAATCATTCTACGATGAACCCATGAATGTACTGAAAAGTCGCT
GTTTATAGTATATAGCTTGTTTTTCATTTTTGCTCAGAAATGGCTCTGAA
ATGGACCAGAGAGCATCTAGATCTTAAAATTCTTCTGAGGGAGGCCCCCG
TCTACAAGGTTATTCTGGAAGGCTTCTGAAACGTCCCTTTTCTTTAAAAA
AAAAAAGGAAGAACAGGTGGGAAATTGGTCATCAAAAAAAATGTGATCAC
ACAAAGGTGCCAAATAAGGGCTGCCAACTTATTACCCAGGTGTATCATCG
AGTGTCGGCTTCATGACTGAATGTTTTTTGGTACATCCACCAATAATGTT
AGTAACATATATTCTAGAAGAGAGAAGGCTTTTTTTAGTGTTCTGAGGTT
A

Coding sequence (CDS) from alignment at Sc0000001:8383384..8384234-

>transcript:BL76825_cuf0 ID=transcript:BL76825_cuf0|Name=transcript:BL76825_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=300bp|location=Sequence derived from alignment at Sc0000001:8383384..8384234- (Branchiostoma lanceolatum)
ATGCAGGGCTGTCTCCAGGACCCGTCCCTCCGTCCCGGAAGGGAAATCTG
CTTGTTGGTACAGAAAAAAATTAAAAGCTGGAGACAGCCCTGCCTGTATG
TCAGCGGCTGGGCTGATTTTCTTCAGTGCACCCCAGATGATCATGAGGTA
TCAGCGGCCATTTTGGAGCTGACGGTGTCGGAAGACAGCCACATGAATCG
TCCATGGCAGCCTGGAGAAAGAGACCCTCCACAAACTGACGAAATCATTC
AATCATTCTACGATGAACCCATGAATGTACTGAAAAGTCGCTGTTTATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL76825gene:BL76825Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL76825_cuf0-E1BL76825_cuf0-E1-1564476830-29901Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL76825_cuf0transcript:BL76825_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000001genomeSc0000001:8383384..8384234 -
Properties
Property NameValue
Transcript idBL76825_cuf0
Biotypeprotein_coding