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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL76585_cuf0 >transcript:BL76585_cuf0-protein ID=transcript:BL76585_cuf0-protein|Name=transcript:BL76585_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=898bp
MSSASRFPPLQVSSLMESDKIRPRSHEIPRQTQEAEKSPEKRRPKSQELP
TIRGASRAGWRTAKSRVVSRTRADRDTGLSLKPPPHTPGLRARPGWEKDG
TRTPSEDMDDRNRSSRNRFYRTAAMATRSQTLLDIGRHLVPSPNAGQGQR
RENDTSSQSDYQEEKHKTRIDKARNEKYERQSTVNVTLTSSTVRLTQETE
REKTSYSPLVNEISREDSNGREEKENCSLFQLNKKQPDSTAGDRISGGDA
NDLEEKEDYYLIHLNKKQQPTSAKTFGSSSVDRISREDGKDREKKEEHAQ
MQLNKKQQPIGAESYTSSVNSTLVNRFSREDGNDQEERNDNSLSKLNTAP
LVNESTNDAYLSAGLSYGYKLWNXXXXXXXXXXXXXXXXXXXXXXXXXXX
XIRGASRAGWRTAKSRVVSRTRADRDTGLSLKPPPHTPGLRARPGWEKDG
TRTPSEDMDDRNRSSRNRFYRTAAMATRSQTLLDIGRHLVPSPNAGQGQR
RENDTSSQSDYQEEKHKTRIDKARNEKYERQSTVNVTLTSSTVRLTQETE
REKTSYSPLVNEISREDSNGREEKENCSLFQLNKKQPDSTAGDRISGGDA
NDLEEKEDYYLIHLNKKQQPTSAKTFGSSSVDRISREDGKDREKKEEHAQ
MQLNKKQQPIGAESYTSSVNSTLVNRFSREDGNDQEERNDNSPSKLNTAP
LVNESTNDAYLSAGLSYGYKLWNEISRWGNQNSSRFSHSLKLLDRIESGI
GNMLGETKTTQDVKCEGEESSSCNLQNSENTPHDPSESASTCVNEEKEDL
NYEGKEQIFTSQGSDETDHNTASKDVPSRKYSKAASHANSWCQSSHDDYY
VTTLEDKGPPRHPTKGRQKNGRTVASGELNTYEDYFISLDSKSKFKRV Run BLAST on NCBI mRNA from alignment at Sc0000487:31151..35702+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL76585_cuf0 ID=transcript:BL76585_cuf0|Name=transcript:BL76585_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4552bp|location=Sequence derived from alignment at Sc0000487:31151..35702+ (Branchiostoma lanceolatum)
TGTCCTTCCAGTCAAACGGAGTAAAACTTTAATGATGGATGTGTACGAGA
GCCTGTCATCAGACAATGGAGGAAAAACCGCGCCCGGTCTGTAGGGAAAT
CACCAAAGTGAGGAAGGTCAAAAAGTCAGCGGTGCTCCCGTACTACCCTC
CTAGCAACACCAGCTGTCAAGGATATCCAAAGACACCCCAAACCCACGGA
TGTACAAACGGCTTAACGAAACTAAGTACGGAAGGAGACGACTATTACTA
CGTTCAGTTCAATCACAACGTCTCGGTAAAAAGCCGCGCTAACTCGAGGG
CCTCGTCTGTTTCGTCCTGGGTTTCCTGGCGGGACTATGCGACTCCGAGG
AAGAGCAGGGCCATACAAAGGGTGCGGCAGCTTTCCGAGAAAATTACGGG
GCTCGAACTTCCACGTCGACAGACACGTCTGCCCTACGTGAACACGAGTA
GGTCTGCGTCTTCGCTCGTGAAAGGGTGGAGAACGCCGAGTTTTGGGAGG
CAGTACTCCAAAACAGCGCCAGCAAGGTTGGCGTCAATACGCGAAGGGCG
ATATTCATCCGGTGCGGTACGTTTTCCTCCTATTCTCAACACAGAAGCGT
CCACACAAAAACGATAGACAGTGTGACAGTGATAGAAGTCACTTTTTCTA
AAGATGAATAATTGAGCATGTCGACTTTTCATGGCGGGAACAATAGGCGA
CAACGGGCCGTTTCAAGGGGGACAAATTTTGGGATTTGGCCTCAATAGAG
AAGCGGATTATTCATCATGATATGTGCGAGGATACGGCATAGCAACAGCG
GGAAAGGCTTACGACATAAGGACGTCGTAAGTCAGATCGGGCATTAGAAT
GGTCCCTTGATTTCCAAAAACCACAAAGACCCCACAGAAGCGATGGAGGA
ACTTGTCATCACAATGGGCAGGAAATAATACTGTGGACGTCAAGAACAGG
ACGCATGACGCATCCCACTTGTAAGTATTTTGTACTTCTGATCGTTGAAT
ATGCTTCGTGATTTAAGCTCCAGGATGTGCTGTGTTCATGTCTAAGATAC
CGCGCAAACACGCGTACGGTAATGAATAGGGTGTCACATGTTTCGTCTCT
TTGAGCCCGGATATGTAATTTGTCAAAACTGACTTTCCAGGCATTTGCAT
GAGGAAAGGCAGTGCTGTACAAGACGAGCTGACTGTGTGTTCCCAAGATG
AGCTCAGCCAGCCGTTTTCCACCATTGCAAGTGTCGTCTTTGATGGAGAG
TGACAAAATTAGGCCAAGGTCTCACGAAATACCCAGGCAGACGCAAGAGG
CTGAAAAATCTCCCGAAAAACGCCGGCCAAAATCTCAAGAACTTCCCACG
ATCAGAGGCGCTTCGAGAGCGGGATGGCGGACGGCAAAATCTCGGGTCGT
TTCTAGGACACGGGCCGATCGTGACACGGGCTTGAGTTTAAAACCGCCGC
CTCACACCCCGGGTCTCAGGGCACGGCCGGGCTGGGAGAAAGATGGCACC
AGGACTCCGTCAGAAGATATGGACGATCGCAACCGATCCAGCAGAAACAG
GTTCTATCGAACCGCTGCCATGGCAACGAGGTCGCAAACACTTCTGGATA
TAGGCCGCCATCTTGTCCCGTCGCCCAACGCTGGTCAAGGTCAACGACGG
GAAAACGATACGTCATCACAGAGTGATTATCAAGAGGAGAAACATAAAAC
GAGAATTGACAAAGCACGGAACGAAAAATACGAAAGGCAGTCAACGGTTA
ATGTGACACTTACGTCAAGTACAGTCAGATTGACACAAGAAACCGAAAGA
GAGAAAACTTCCTATTCACCTCTTGTGAATGAAATCTCGCGTGAAGATAG
CAACGGTCGAGAAGAGAAAGAGAACTGTAGTTTGTTTCAGTTGAACAAGA
AGCAACCTGACTCGACTGCCGGGGATAGAATCTCGGGTGGAGACGCCAAC
GATCTAGAAGAGAAAGAGGACTATTATCTGATACATTTGAACAAAAAGCA
ACAACCTACAAGCGCCAAAACATTTGGCTCAAGTAGCGTGGATAGAATCT
CGCGTGAAGATGGCAAAGATCGAGAAAAGAAAGAGGAGCATGCTCAGATG
CAGTTGAACAAAAAGCAACAACCAATAGGCGCCGAATCATATACATCTAG
CGTAAATTCAACTCTCGTGAATAGATTCTCGCGGGAAGATGGCAATGATC
AAGAAGAGAGAAATGACAACAGTCTGTCGAAGTTAAACACTGCGCCATTG
GTGAATGAATCAACAAACGACGCTTATTTGAGCGCGGGTCTCTCGTACGG
CTACAAGTTGTGGAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCG
ATCAGAGGCGCTTCGAGAGCGGGATGGCGGACGGCAAAATCTCGGGTCGT
TTCTAGGACACGGGCCGATCGTGACACGGGATTGAGTTTAAAACCGCCGC
CTCACACCCCGGGTCTCAGGGCACGGCCGGGCTGGGAGAAAGATGGCACC
AGGACTCCGTCAGAAGATATGGACGATCGCAACCGATCCAGCAGAAACAG
GTTCTATCGAACCGCTGCCATGGCAACGAGGTCGCAAACACTTCTGGATA
TAGGCCGCCATCTTGTCCCGTCGCCCAACGCTGGTCAAGGTCAACGACGG
GAAAACGATACGTCATCACAGAGTGATTATCAAGAGGAGAAACATAAAAC
GAGAATTGACAAAGCACGGAACGAAAAATACGAAAGGCAGTCAACGGTTA
ATGTGACACTTACGTCAAGTACAGTCAGATTGACACAAGAAACCGAAAGA
GAGAAAACTTCCTATTCACCTCTTGTGAATGAAATCTCGCGTGAAGATAG
CAACGGTCGAGAAGAGAAAGAGAACTGTAGTTTGTTTCAGTTGAACAAGA
AGCAACCTGACTCGACTGCCGGGGATAGAATATCGGGTGGAGACGCCAAC
GATCTAGAAGAGAAAGAGGACTATTATCTGATACATTTGAACAAAAAGCA
ACAACCTACAAGCGCCAAAACATTTGGCTCAAGTAGCGTGGATAGAATCT
CGCGTGAAGATGGCAAAGATCGAGAAAAGAAAGAGGAGCATGCTCAGATG
CAGTTGAACAAAAAGCAACAACCAATAGGCGCCGAATCATATACATCTAG
CGTAAATTCAACTCTCGTGAATAGATTCTCGCGGGAAGATGGCAATGATC
AAGAAGAGAGAAATGACAACAGTCCGTCGAAGTTAAACACTGCGCCATTG
GTGAATGAATCAACAAACGACGCTTATTTGAGCGCGGGTCTCTCGTACGG
CTACAAGTTGTGGAATGAGATTTCTAGATGGGGCAACCAGAACAGTTCCA
GGTTTTCCCACTCCTTAAAGCTTCTGGATCGTATCGAATCTGGCATAGGG
AACATGCTGGGGGAAACAAAAACAACACAGGATGTAAAATGTGAAGGGGA
AGAGAGTTCCTCGTGCAACTTACAGAACAGTGAAAACACTCCGCACGATC
CTTCGGAGAGTGCGTCGACATGTGTGAATGAAGAAAAAGAGGATTTGAAC
TATGAAGGGAAAGAACAAATATTCACATCACAGGGAAGTGATGAGACCGA
CCACAATACAGCGAGCAAAGATGTGCCTTCTCGGAAGTACAGTAAAGCAG
CTAGCCACGCAAACTCTTGGTGTCAATCATCGCACGACGACTATTACGTC
ACGACCCTTGAGGACAAAGGACCACCGCGCCACCCGACAAAGGGACGCCA
GAAAAACGGAAGGACTGTAGCTAGCGGAGAACTCAACACGTATGAGGACT
ACTTTATTTCCTTAGATAGTAAAAGCAAGTTTAAGAGGGTTTGACCACTG
CTGTTGTGGTACGATTAGACATTTCAGTGAATACGTTACCCTGCATGTAA
CCTGGAGACTCAAAAAATGACGCTTACCTTCTCAAGGGCGCCACCTTCCT
CCTACACTGAAAACTACAGTTACTGCATTCTTTCCCAAAAGTTCTGTTTC
TGAAATCTGGACGGCATCTGTTTAGCAGTGTTTCTATTCATTGCTGTCTA
CATTTAAAATGTATTAAGCGATGGGATTTGTTTAATGTAACATTATCTTA
TATTATGCGAGAACAGATTCCTTTTCTGCTAAATCATAGGAACCTTTGCA
CGTTGAGAACACATGAAAACCATTATGCTTGTTGTGACTATACCGCAACT
AATACTTTATACTATTTCCTGCTGTGTATCTAATACGAGCTCTTTAACCC
CAATAAATGTGACATCGTTTTCATGTTCCTGTCTTTCATATTTTGTCATG
TGGATGATTTGACTCAAAAAGATCAGACCATAAAACGGCTCCCCCTGACG
CTCATAGTTATATTGCACCAGTGAGTTAGCAAAACGCTTTACAATTTGAA
ACGAAAATAGGGTGTATTGACGGAAAAAATAACGTAATCACTTTTTGACA
CTTCGCAAATAAGATAGAAGTTAAAATTTACAGGGCATTATTGCGCGACC
GG Coding sequence (CDS) from alignment at Sc0000487:31151..35702+ >transcript:BL76585_cuf0 ID=transcript:BL76585_cuf0|Name=transcript:BL76585_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2697bp|location=Sequence derived from alignment at Sc0000487:31151..35702+ (Branchiostoma lanceolatum)
ATGAGCTCAGCCAGCCGTTTTCCACCATTGCAAGTGTCGTCTTTGATGGA
GAGTGACAAAATTAGGCCAAGGTCTCACGAAATACCCAGGCAGACGCAAG
AGGCTGAAAAATCTCCCGAAAAACGCCGGCCAAAATCTCAAGAACTTCCC
ACGATCAGAGGCGCTTCGAGAGCGGGATGGCGGACGGCAAAATCTCGGGT
CGTTTCTAGGACACGGGCCGATCGTGACACGGGCTTGAGTTTAAAACCGC
CGCCTCACACCCCGGGTCTCAGGGCACGGCCGGGCTGGGAGAAAGATGGC
ACCAGGACTCCGTCAGAAGATATGGACGATCGCAACCGATCCAGCAGAAA
CAGGTTCTATCGAACCGCTGCCATGGCAACGAGGTCGCAAACACTTCTGG
ATATAGGCCGCCATCTTGTCCCGTCGCCCAACGCTGGTCAAGGTCAACGA
CGGGAAAACGATACGTCATCACAGAGTGATTATCAAGAGGAGAAACATAA
AACGAGAATTGACAAAGCACGGAACGAAAAATACGAAAGGCAGTCAACGG
TTAATGTGACACTTACGTCAAGTACAGTCAGATTGACACAAGAAACCGAA
AGAGAGAAAACTTCCTATTCACCTCTTGTGAATGAAATCTCGCGTGAAGA
TAGCAACGGTCGAGAAGAGAAAGAGAACTGTAGTTTGTTTCAGTTGAACA
AGAAGCAACCTGACTCGACTGCCGGGGATAGAATCTCGGGTGGAGACGCC
AACGATCTAGAAGAGAAAGAGGACTATTATCTGATACATTTGAACAAAAA
GCAACAACCTACAAGCGCCAAAACATTTGGCTCAAGTAGCGTGGATAGAA
TCTCGCGTGAAGATGGCAAAGATCGAGAAAAGAAAGAGGAGCATGCTCAG
ATGCAGTTGAACAAAAAGCAACAACCAATAGGCGCCGAATCATATACATC
TAGCGTAAATTCAACTCTCGTGAATAGATTCTCGCGGGAAGATGGCAATG
ATCAAGAAGAGAGAAATGACAACAGTCTGTCGAAGTTAAACACTGCGCCA
TTGGTGAATGAATCAACAAACGACGCTTATTTGAGCGCGGGTCTCTCGTA
CGGCTACAAGTTGTGGAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCGATCAGAGGCGCTTCGAGAGCGGGATGGCGGACGGCAAAATCTCGGGT
CGTTTCTAGGACACGGGCCGATCGTGACACGGGATTGAGTTTAAAACCGC
CGCCTCACACCCCGGGTCTCAGGGCACGGCCGGGCTGGGAGAAAGATGGC
ACCAGGACTCCGTCAGAAGATATGGACGATCGCAACCGATCCAGCAGAAA
CAGGTTCTATCGAACCGCTGCCATGGCAACGAGGTCGCAAACACTTCTGG
ATATAGGCCGCCATCTTGTCCCGTCGCCCAACGCTGGTCAAGGTCAACGA
CGGGAAAACGATACGTCATCACAGAGTGATTATCAAGAGGAGAAACATAA
AACGAGAATTGACAAAGCACGGAACGAAAAATACGAAAGGCAGTCAACGG
TTAATGTGACACTTACGTCAAGTACAGTCAGATTGACACAAGAAACCGAA
AGAGAGAAAACTTCCTATTCACCTCTTGTGAATGAAATCTCGCGTGAAGA
TAGCAACGGTCGAGAAGAGAAAGAGAACTGTAGTTTGTTTCAGTTGAACA
AGAAGCAACCTGACTCGACTGCCGGGGATAGAATATCGGGTGGAGACGCC
AACGATCTAGAAGAGAAAGAGGACTATTATCTGATACATTTGAACAAAAA
GCAACAACCTACAAGCGCCAAAACATTTGGCTCAAGTAGCGTGGATAGAA
TCTCGCGTGAAGATGGCAAAGATCGAGAAAAGAAAGAGGAGCATGCTCAG
ATGCAGTTGAACAAAAAGCAACAACCAATAGGCGCCGAATCATATACATC
TAGCGTAAATTCAACTCTCGTGAATAGATTCTCGCGGGAAGATGGCAATG
ATCAAGAAGAGAGAAATGACAACAGTCCGTCGAAGTTAAACACTGCGCCA
TTGGTGAATGAATCAACAAACGACGCTTATTTGAGCGCGGGTCTCTCGTA
CGGCTACAAGTTGTGGAATGAGATTTCTAGATGGGGCAACCAGAACAGTT
CCAGGTTTTCCCACTCCTTAAAGCTTCTGGATCGTATCGAATCTGGCATA
GGGAACATGCTGGGGGAAACAAAAACAACACAGGATGTAAAATGTGAAGG
GGAAGAGAGTTCCTCGTGCAACTTACAGAACAGTGAAAACACTCCGCACG
ATCCTTCGGAGAGTGCGTCGACATGTGTGAATGAAGAAAAAGAGGATTTG
AACTATGAAGGGAAAGAACAAATATTCACATCACAGGGAAGTGATGAGAC
CGACCACAATACAGCGAGCAAAGATGTGCCTTCTCGGAAGTACAGTAAAG
CAGCTAGCCACGCAAACTCTTGGTGTCAATCATCGCACGACGACTATTAC
GTCACGACCCTTGAGGACAAAGGACCACCGCGCCACCCGACAAAGGGACG
CCAGAAAAACGGAAGGACTGTAGCTAGCGGAGAACTCAACACGTATGAGG
ACTACTTTATTTCCTTAGATAGTAAAAGCAAGTTTAAGAGGGTTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000487 | genome | Sc0000487:31151..35702 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL76585_cuf0 |
| Biotype | protein_coding |
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