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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL76484_cuf0 >transcript:BL76484_cuf0-protein ID=transcript:BL76484_cuf0-protein|Name=transcript:BL76484_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=159bp
MGVPKEQLKYVVAHVTPRESMPLLRELGLPDATIDQVFHDFETYGSHEKL
YQGLRKCKEEIGSTFTSGKLAKALHDIGRADLAEDLTTEMLDLHPGENKG
LVKITVESEMTKSKVITTFITSEEDAQSIQSDIQKKLRKKRKGKRGGEVL
NKILDKILK Run BLAST on NCBI mRNA from alignment at Sc0000182:33402..38954+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL76484_cuf0 ID=transcript:BL76484_cuf0|Name=transcript:BL76484_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=5553bp|location=Sequence derived from alignment at Sc0000182:33402..38954+ (Branchiostoma lanceolatum)
ATTCGCTAACACACACACAAAAAATGAGAGGAGACTTTGGCATAAATGCC
GTCACTAAAAGCCCCTGGCCCAAAATCAATACATCCCGGTTTGTGCCTCT
TGCGAAAAGTCCAAAGGTATTGTTAGCCTCCCGAGGAATTTTTCTGACGA
CATGTAACTTCTCTATTTGTCACATCATGGTTGGCCCAAGCCGATCGGGT
GACATATTGTCACCAATAGGGGACAATGTAAGTGATGTCATACATATGCT
GCGCTGAGCAGCTAGAAACGACCAATACCAACGTATCACTTTCTCAAATC
CAGGGAAAGAGGCGGATCCTAGTTGATCTCACGGTAAGAGACTGAACAGT
ATTAAAAATCATCTTATTTGTCATACCATCTTTAAACCATCTCGTCTTTT
GCCACCGTCTAATCGTCTATTGATGCATTTACCTGTTTGATTTCCAGGAA
GAGAGAATATCTTGCATTAGAGAGAATCTACAGCACACGGGGGTGCCATA
TCACAGTTTTCGCTGGCGACAGTCCGGACTATTTCACACAAACCCCAGCC
AACACACCAGATACAACTGATCCCCATAAGTTCTGTGAAGGCTCAGAAGT
CAGAACAAAACAGGTGAGTACTTACAGTAGTCCCAGTTTGGTTAAAAGTT
TTTAATCTCAAAGCAGATGCATGGACCTGGTCCTGTACAAGTCACAGTGT
TCACACCTGTTTTTGCATCCTTTTAAATACACCTTTCTAGTATTGTACAT
CTGCCGGTGGTCAGTCCTTTTTTCACGAGGTGAATCGTTAAGTGCACGTA
GTTAAACAACAATTAATGTTACCGGATCACGCGGACCAGTGCGCAAATAC
TCCAGTCGACCCTTGCGCGCAACACCCCGGATGTCTAAAAGCATTTTGTT
TGCTGTCCATCGGCGCCTCTGAAGTCCTTTGCCAGAAGCACCATGTGCCA
TACATTTATTACCTTCGCTAGGAAGTTTACCTTTCGCTAGGAAGGTTATG
TTTTCAGTGCCTTTTGTGGTTGGATTTGTGACTGGGTTTGTGGCTGGATG
TGCTTAACTGTGAACAGCATAGCTCGACAAGATGTGGATGGATCTTTAGA
ATATTTGGTAAGGTTGACAGTGGTCGGGAAAACGAAGGTCAAGTTCGATA
ATGCCCCCCTAGCAGCTTTGTAAGGTACTGCAGTGAAACTTCGCTCACTC
ATTTTTTTCGGTTGTTATAGCAAATGACTAGTCGACTGGGCCTTATGACA
CTATATACAACTCGGGTGGTTCACTAAACCTTAATTGTTTGTTCTGGACA
TGCTATGGTTTTGGTTTTGGGTGACAGTTTTTTGACGTAAGGAAGAAGTA
GGATATGGTCGTGTCTCCTAGCAGCTAATTTCGAAACTGCAGTGGCGTTT
TTTGAACTTTTGAAGAGGGGAACCTATTTCATAATTTTGGTCAGGGAGGT
AGCTTAGATAGAAATGTACACAACCAGTAACATTATGACTTGATTTACAT
AATTGATGAGAAAATGCTATGATTTCAGTGTTTTCCATAATAAGACTTCA
ATACATGTTGTGTTTTTAGTTTAGGGCAGGTGAAACATTAGCAGATACCA
ATTATGCAAATCAGGGCCTGATGAACATATGTGAAAATGCTATAATTCCT
TAGTGGTAAATGATGGGAATTTCAGACTTGTGACATATGTAAGTCAATCA
AAGATAAACATCACCTGATGATCACCATGTATAGATGATATGCGAAATGA
GCTATCAATGAAATGAATCTATGTAAAGAAAATTCATTGTAGATTTTTTT
AAATGACCCCAGCATTTCTGTCATTGCCAACAGAAGACCCTTACTTCTTG
TGAGGCAGGTAATAACGGCACCAGCCCTGGATACCGCCCTAAAGCTACGT
GTACGGGTCAAGTGCAAGTACAGAAAAGGTAAGACCGATTGCGTCTATAT
CTTAATTTCTTAACATGAGTATATCTGTTTGCCTTTTTAACTGGTTTCCC
TGTACAAACAATTAATGCTGAGACTTGTTTCGAGTATTGCAATATCTTTT
TTTTTTCATTAGTATTCCTCATGGGAGTCCCAAAAGAACAACTGAAGTAC
GTGGTTGCTCACGTCACACCAAGGGAGTCGATGCCCTTACTGCGTGAACT
GGGACTCCCTGACGCGACCATCGACCAGGTGTTCCATGACTTCGAGACCT
ACGGCAGTCATGAAAAACTCTACCAAGGTCTACGCAAATGTAAGGAAGAG
ATAGGAAGTACTTTCACTTCTGGTAAGCTTGCAAAAGCCCTCCATGACAT
CGGTAGGGCGGATCTGGCTGAAGATCTAACGACCGAAATGTTAGATCTCC
ACCCGGGAGAAAATAAGGGCCTGGTTAAGATCACTGTAGAGTCAGAGATG
ACTAAGTCCAAAGTGATCACAACCTTCATCACTAGCGAAGAGGATGCACA
GTCAATTCAGTCCGACATTCAGAAAAAGTTGAGAAAAAAGAGGAAGGGAA
AACGTGGGGGTGAAGTTCTAAACAAGATCTTAGACAAGATCTTGAAATAA
CAAAGATGATCCCTATCCAGCATGATATATTGGCTGACCACCACCTTCCA
TTTGTGATCACAGTATCCAAATGGAAGGTGCAGCCATGGGTGCAGTTTTC
TGACTGGCTGACTGAATTGATTTTGGATTTTGTTCTTGCTCTGAGTGGTA
CCCCGTTACTCTCCAAGCAGAGGTTAGGCTCTTTTGTTGGCCTCTCTATT
TTTCAGCTTTTCTTACTGGCCTAACAGAAAAGCTGTCAAAATGAATAGGC
CGACAAAAATGCCTTAAACATATAAACAACCCGAATTTTTTTTCTGATTG
GAGAGCAGTACCCGGTAGCATTTAGATCAAGAGCACAAGCGAGAAGTTTC
TCTTTTACAGATGCAAAAACATTAAGGCAATGTTCCCTCATTCCCTAAAC
CTAGCTCTTCAGGCAGAGGTCTGGCTTAACTCATTTTTGTACGTCTTTTC
GAGAAAAGACGTACTAAAATGAACCGAAATCCGACCAATGCTTGGAGAGT
ATCTAGATCCCACTGTCATGGATGTGCCAGTGGTGAGTATACTTTTGATG
TCCCTATGCTTGCAAAGAGAGTATTTATCAGGGCAACACACTCTTCTTGT
GAAGGCTGTTCTGATTATTGTGTTTGCAAACTCATTGACATCTTAGGTTT
GATGATAATACATGTATCCCTAGCATTGTTGACTGAATATGGCTCCTTTG
AAGTTTTGTATTGTAGCTGGGGTAACTGTCTAGATGGGAACATGCCGCTA
AAAATCAGCTGGCGCACGCTGAAAATAATAACGTCACCTCCCGTCTCAAA
AAACATCTTACAAAAAAGAGACGAGCTTAGTATTGATAGGCAGCACCAAA
CGCCATATTCAATATCTGGTAGTGATGGTTCATCGCCAAGTAAACTGAGA
TCTGGAATGACAGCGGCTCGATCTGCAATCTGATCATAGCTGCTGGAGAA
GACTAGAATTTCAGAGGAGCTACGTTTCAGTCAATGGGTTAGGAATATTG
GTGCTTTTTACGAAAGATTACTGTAAGAGAATCTATGGAGATTATCTTAC
ATAGTAGAGCTGTTGAAACGTATTGAGCGTCTGCATAATCAGCACATATA
GCTTTTCACTGGATAAAAGCTATATGTGCTGATTATGTTAGGAAGACTAC
GTGCCCCTTTTCCACATTCAGGCTCCTCCCATATGTCCTCAAAATCTTGT
ACTAGTAACTAGTTTTTGAGGATGCCACTGGAAAAAGACCTAGCCAAAAT
GTGGGGCAGAGCTTCATTGATGCAAAGTTGTTTGTAGCACAACCTTGGAT
ACTTCATACAAAATAGTACCATGTACTGGTATCAGCATGTATGGTAACAT
TAGTAGAATATGCGAGGAATTAGAAGCATTTTTTTCTAAAGAGAACTGCA
TCGGTTCCATTGTCAGACAATTCAGTAAGTCAAGTCGATGATATCGCGCT
GGGTAGGATTCAGAAGGCAGCAGGGCTTCTGTAGTACTCGCCCAGCAGAG
GTTAGGCTCCGGCTTTTTAAACTTGTTTTTAGGCGTTTTGTCGGCATTTC
TTTTTTGCCCTACTTTTTAGGTATGTGTAAGGCCAATACATACCGGAAAA
GATTGACAAAGTAGAGATAACGACAAAACGCCTACAAACACGTTCAAAAA
GCTGGAGCCTGATTTCTGCTTGGAGAGTACTTCTGTAGTACTTTTTCCTA
GTATTCGTCGCTTCTGCTTCTGAGAGCAGCACGACATTCGAACAACGATT
GTCCCACGGTGCATTTCAACACTGTCATGATATCACCTAATCTGGTAAAC
AGACTAACGTATGGCTAGCCTGGTATCCATTCCATTCTAGCCCCGGTTCT
CTCCTCTCATCGCTTCCCTGGCAAATATTCGGCAGGGAAGCAATCAGAGG
AGCAAACTAGCTAAAATAGGATGGATCTCAGGCTAACATATAACACCGGG
TTAGGTGTTATGCATGTTATTGGCATGTGCCATGCTCGTTACTCCAGAAA
CGAACATTGCACATGTCAGCAACATGCATAACTTAACATTGGAAGGGCAC
GAAGAGATGTGATTTTGTGCGGACATTGGAATAGGTATATAATACAGAAG
CTGCTGTTTGCCTCCTAACAGAGCCTTACGTCCTAGAGACGCCACAGGCT
CGACACATGTATATATTCATATATCTTAGGTTTACAGAAGCTTAGAATGC
AAAAATAGAAAGCTAAAAGTATGTAAGCTGTGATTATGTTGTATTACACA
TAGATTGCAAGAGTTTGTTCGATAAGAGAGTTTAGTTGATACAATGTGTG
TTGATACATTATACGTAGATTGCACTCTGTTACTATTTTCTCAATAGGTT
ACATAACGTCAGATCTATAATGCTTGTATTGTACAACGAAGGCATCTTGA
AGTTGATTTGTAATCTCCATATTGTCAGTGAATGAGTGCTTTGTTGGAAA
TCTTTGTAAGTCTTGGTTCATGACATAACAATTATAACATGAAGAGAAAT
ACTTTTAAGTACATCGATTTGCGTTCTGAAATATTTTCCCCAGCACTTTT
TAGCTTTAAATGGTTTATAATAACCATACTGAAAGGAAAATGTGTTGAAA
ATTAGAATGTGTACTCCGATTTCCTTGTATATCTGACGAACAATAATCTA
ACTGTAGCTTTCTTTAGTATCATATGACGGTTTTGTGAAATTAATCTCAT
TGTATTGTGTACTGTTTGTAGATGCTAATAAAGCTTTGATAAAAGTAATT
TCTTCGTTATTTGATATTTCTATAAGTTGTCAAGTACATCAGTATTACTA
TGTGAGGCACGTTTCTCTCATTCAACGTTAACATTTGGCATGCAGACCAG
TCTGCTTTAGATAGGATACCAAAAACAACACACCGAGGCATGTAACGTCA
AGTAAGATCCATCTTAAAGTCTTGATGATTTTTCTTCCATCTGTGCTTGA
ACTTACACAACATACCGCTATTAGGATGTCCCATCTACAATACCGCAATC
GTG Coding sequence (CDS) from alignment at Sc0000182:33402..38954+ >transcript:BL76484_cuf0 ID=transcript:BL76484_cuf0|Name=transcript:BL76484_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=480bp|location=Sequence derived from alignment at Sc0000182:33402..38954+ (Branchiostoma lanceolatum)
ATGGGAGTCCCAAAAGAACAACTGAAGTACGTGGTTGCTCACGTCACACC
AAGGGAGTCGATGCCCTTACTGCGTGAACTGGGACTCCCTGACGCGACCA
TCGACCAGGTGTTCCATGACTTCGAGACCTACGGCAGTCATGAAAAACTC
TACCAAGGTCTACGCAAATGTAAGGAAGAGATAGGAAGTACTTTCACTTC
TGGTAAGCTTGCAAAAGCCCTCCATGACATCGGTAGGGCGGATCTGGCTG
AAGATCTAACGACCGAAATGTTAGATCTCCACCCGGGAGAAAATAAGGGC
CTGGTTAAGATCACTGTAGAGTCAGAGATGACTAAGTCCAAAGTGATCAC
AACCTTCATCACTAGCGAAGAGGATGCACAGTCAATTCAGTCCGACATTC
AGAAAAAGTTGAGAAAAAAGAGGAAGGGAAAACGTGGGGGTGAAGTTCTA
AACAAGATCTTAGACAAGATCTTGAAATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000182 | genome | Sc0000182:33402..38954 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL76484_cuf0 |
| Biotype | protein_coding |
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