transcript:BL75855_cuf16 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL75855_cuf16
Unique Nametranscript:BL75855_cuf16
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL75855_cuf16

>transcript:BL75855_cuf16-protein ID=transcript:BL75855_cuf16-protein|Name=transcript:BL75855_cuf16|organism=Branchiostoma lanceolatum|type=polypeptide|length=143bp
MAEAGNGSLTAVPKSFCDGSPTGVSSHRNANNIEDQPEAQTDEKPYMCGE
SGYRSAKTCGLTGHRRIHMGKKSYKCDQCAYSAADKSALDSHLAIRMGEK
PYMCEKCGYKTANKSDLLRHMRTHTGEKPFKCNHCDYSAAQKS
Run BLAST on NCBI

mRNA from alignment at Sc0000114:129815..131014-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL75855_cuf16 ID=transcript:BL75855_cuf16|Name=transcript:BL75855_cuf16|organism=Branchiostoma lanceolatum|type=mRNA|length=1200bp|location=Sequence derived from alignment at Sc0000114:129815..131014- (Branchiostoma lanceolatum)
GCTAAGTTCACCTTTCACCCGTGACTTTTCATAGAAGACGCTTGCAGGAT
TTGTGAAGGTAAAAATCAACCCTGGAAGCAGGTAAGAAAGCGAGTTATGA
TAAATGACTATCATTCCGTGCCGCAGAGGAGCTATAGGTCGTTTCTGTGA
TGTATGGTCCACATTAGGACGGAATGTAAGGCTTTTCTGTTATGTTATGT
TATGTTATGTTATGTTATGTTTTCTGTGTGGGAAAATTAGGGAGGGGAGG
GGGGCGACACCACACGTCACGAGGCAAAATAGTCGTTTTTGTCAGAAAAA
AACTCTACAAAGGGTGTTACAGAACCACCAAAATGAGACAGAAGTACAAT
AGAAAACATGAGATCGGAAGACTTTACAAATATGGTTTGTAAAGCAGATT
CGAAGGCGAAGAGGGGGGGGGGTACAAGTGGGTCATGTTTGGAGGTCATT
ATATAATAATAATAATAATAATATAGGGGTGGTGGCTGGAAAGTTGTTGT
AGGAGCTTCCTGGTTTTGGAATCAGCAGAAAAATGATCTTTAATCTTTAT
TATCAACATGGCAGAAATACAAGTAATTTATACAATGTCACGGTATATTA
TGTTACCCCAGTTACCCCTGAATTGCGTTGATCTTACAAATCCCATCTAT
ACACACAACGCAACAAAGAAAGACAAAAACCGGAAATCAACACAAAATGC
ACTCTTGACTTATATTATTTTTTATTGATGTGTTTCACATTTCAAATGTA
TTTGTCTATTAGGTTAGACATGGCAGAGGCAGGTAATGGGTCTCTCACTG
CTGTTCCCAAGAGCTTTTGTGATGGGTCTCCTACTGGAGTTTCATCGCAC
AGAAATGCAAACAATATTGAAGACCAGCCAGAAGCACAGACTGATGAGAA
ACCCTACATGTGCGGTGAGTCTGGGTACAGGTCAGCTAAAACATGTGGCC
TAACCGGACATAGGAGAATCCATATGGGTAAAAAATCTTACAAGTGTGAC
CAGTGTGCCTATTCTGCTGCAGATAAATCCGCCTTGGACAGCCATCTAGC
AATACGCATGGGTGAAAAACCCTACATGTGCGAGAAATGCGGGTACAAGA
CAGCCAACAAGAGTGACCTACTTAGACATATGAGAACCCATACTGGTGAA
AAACCCTTCAAGTGTAACCATTGTGACTATTCTGCTGCACAAAAATCTGC

Coding sequence (CDS) from alignment at Sc0000114:129815..131014-

>transcript:BL75855_cuf16 ID=transcript:BL75855_cuf16|Name=transcript:BL75855_cuf16|organism=Branchiostoma lanceolatum|type=CDS|length=429bp|location=Sequence derived from alignment at Sc0000114:129815..131014- (Branchiostoma lanceolatum)
ATGGCAGAGGCAGGTAATGGGTCTCTCACTGCTGTTCCCAAGAGCTTTTG
TGATGGGTCTCCTACTGGAGTTTCATCGCACAGAAATGCAAACAATATTG
AAGACCAGCCAGAAGCACAGACTGATGAGAAACCCTACATGTGCGGTGAG
TCTGGGTACAGGTCAGCTAAAACATGTGGCCTAACCGGACATAGGAGAAT
CCATATGGGTAAAAAATCTTACAAGTGTGACCAGTGTGCCTATTCTGCTG
CAGATAAATCCGCCTTGGACAGCCATCTAGCAATACGCATGGGTGAAAAA
CCCTACATGTGCGAGAAATGCGGGTACAAGACAGCCAACAAGAGTGACCT
ACTTAGACATATGAGAACCCATACTGGTGAAAAACCCTTCAAGTGTAACC
ATTGTGACTATTCTGCTGCACAAAAATCT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL75855gene:BL75855Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL75855_cuf16transcript:BL75855_cuf16-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL75855_cuf16-E1BL75855_cuf16-E1-1564476830-316260Branchiostoma lanceolatumexon
BL75855_cuf16-E2BL75855_cuf16-E2-1564476830-316257Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000114genomeSc0000114:129815..131014 -
Properties
Property NameValue
Transcript idBL75855_cuf16
Biotypeprotein_coding