|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL73179_cuf0 >transcript:BL73179_cuf0-protein ID=transcript:BL73179_cuf0-protein|Name=transcript:BL73179_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=516bp
MGIETGVESDNYTSPSRKTPSASQGSILKREPSSKTVRTRGSSTPKKSVS
FDPTPEVFFVPSRCESRTDNAGARVSPQSPTDVSTYLLHYQGSNYERTKS
LKWDSSGHNVTQPPGASVPTGIHAELYSVAASLSNLVPRRRLRDLLVNTE
DLQVKMKKFQEDTDAPTTEEEGKDATGPGGTRKTEPAKTLPLAKPTRQIK
PFRINITSKYSQQTDIKRTAPVIVGLKPKIKPKNFEEQPSVFKRLYLHSH
PNEGPPKEEIKIPEIPKKATRPITAVTTKSSRSERNLAAPRVRDRDRDKD
KDKERHHHHHHHHHHHRDKDKDRHRDADKERERQKARERLYGTASRGNSR
PKAAKPTPDRPPPRPPPTTPPARSSNHRRPPSRSANVPVAPSQPTQPKPV
EKTRPPPDDRARLFPRTALEKFVMAELQRSRISHMVPSAAPSNRGSPNEN
ISKTARPTPAFKLPDSGVRHIGYASTRERKVSWRTGEVEPIESSSSKHTP
QIMKRFSIAFRSPVKV Run BLAST on NCBI mRNA from alignment at Sc0000002:1011705..1014513+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL73179_cuf0 ID=transcript:BL73179_cuf0|Name=transcript:BL73179_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2809bp|location=Sequence derived from alignment at Sc0000002:1011705..1014513+ (Branchiostoma lanceolatum)
GCCTGAATGAGTGGGTTATATGAAGAGAACGGTATAAGAGAAGAACAACC
AACTGGTGAATAAGAGGGCACGGGCAAGACTAATAGATGTTGGGTTGTTA
TGGACAAAGTAAACTTGCTTTTGTTCCGTCCGAAAGGGGATACTGCCCAG
TTGTAACAAGATTCAACATCGTTATGGAGAGAGGTTTGGATACAAAGGCC
GGCTTGTTGTTTCATGCCACGGGGCCACTTGCTGTTAACAATTACGAGAT
GTCTGTGGATCTGTCCAGGTAGTGAGGAATTGAATCGGCCCGCTATTATT
TACCCTCAAACAAACCAGGTGCACGATCGGGTTGCGGGTGGGTTATTTTG
TGTGCAGTGAGAGTAAAAGATGGCGGACGAGACGGGCACGGAGTTAGTGC
TCTCCGCCACATGTCAACAACAACAACATCTCTGAGGACGTTTCAACTGG
ACCGTCATGGGGATAGAAACTGGCGTCGAGTCGGACAACTATACCAGTCC
GTCCAGGAAAACCCCTTCGGCTTCCCAGGGGTCGATTTTGAAGAGGGAAC
CGAGTAGCAAGACTGTGCGGACTCGGGGCTCCTCGACCCCGAAGAAGTCG
GTGTCCTTCGACCCGACCCCCGAAGTTTTCTTCGTCCCTAGCCGCTGCGA
GAGTAGAACAGACAACGCAGGTGCTCGCGTGAGTCCCCAATCCCCAACAG
ATGTTTCAACATACCTTCTTCACTATCAGGGGAGCAATTACGAGAGAACT
AAGTCTTTAAAATGGGACTCTAGTGGTCACAACGTGACTCAACCGCCAGG
AGCATCTGTTCCCACGGGCATACACGCGGAGTTGTACAGCGTTGCTGCTT
CGCTATCAAATCTCGTACCTCGCAGACGTCTCAGGGATCTACTAGTCAAC
ACGGAGGACTTACAGGTGAAGATGAAGAAATTCCAGGAGGATACGGATGC
CCCAACAACGGAGGAAGAAGGCAAAGATGCTACAGGCCCGGGAGGGACTC
GAAAAACGGAGCCTGCCAAGACGTTACCGCTAGCAAAACCTACACGTCAG
ATAAAACCGTTTAGGATAAATATCACCAGCAAATATAGTCAGCAAACGGA
TATAAAAAGGACAGCACCGGTCATTGTAGGCCTCAAACCCAAAATTAAGC
CCAAGAATTTTGAAGAACAACCTTCGGTGTTTAAGAGGCTGTATTTGCAT
TCTCATCCAAACGAAGGTCCTCCGAAGGAAGAGATTAAGATTCCTGAGAT
ACCCAAGAAGGCTACAAGACCGATTACAGCGGTCACTACCAAGAGTTCGC
GAAGTGAACGAAATCTCGCGGCCCCGCGAGTACGGGATCGGGACAGGGAT
AAGGATAAGGACAAGGAACGTCACCACCATCATCACCACCATCATCACCA
TCACAGAGATAAAGACAAAGACAGACATAGAGACGCAGATAAAGAAAGAG
AGCGGCAAAAGGCAAGGGAGAGACTATATGGTACAGCTAGTCGCGGGAAT
TCTCGACCCAAAGCGGCGAAACCGACGCCGGACAGACCACCCCCTCGCCC
GCCTCCTACAACGCCGCCTGCGCGGTCATCAAATCACAGGAGACCGCCGA
GTCGCAGTGCTAATGTTCCCGTTGCACCGTCGCAACCTACTCAACCTAAA
CCTGTGGAAAAGACAAGACCACCGCCAGACGACCGCGCGCGCTTGTTCCC
TAGAACTGCCCTGGAGAAATTCGTGATGGCAGAACTCCAACGTTCACGTA
TATCTCACATGGTGCCTTCGGCTGCACCCTCAAACCGTGGGTCACCAAAC
GAGAACATAAGTAAAACTGCTCGTCCAACGCCTGCCTTTAAACTCCCAGA
CAGTGGGGTAAGACATATTGGATACGCTAGTACAAGAGAGAGGAAAGTAT
CATGGAGAACAGGTGAGGTAGAGCCGATAGAATCCAGCTCTAGCAAGCAC
ACTCCTCAGATCATGAAGCGATTCAGTATCGCCTTCAGATCGCCTGTGAA
AGTGTAGATATGTCTACAGTACGGTGTTAACTAGCCTCTACCAGGCCCCG
CGGATGGCTGCAAAAATAGTAGAAATTGGCCAAATACAGTGAATATTATG
CTTAGGGAGTCGGCTACGGATAGAGGGTCAAATATGCCATCTATCTAGAG
TTCGCAAACTGTAACTTCTATAGCGGACTAGATTCTCTGGCATGTTATCC
GTCTATTTGGCCAATTTTTACGTTTTTTCCAGTGACCCGTGGAGCCTGGT
AGAGGCTAGGTGTTAACGTGGCTTGTATTAATCCATGTCAAGTCTTTGTG
ATGCTCTATTCATTCCCGCTACCCGACTGTACTTTCAGCATGGTTGCCAC
AGTAATCGTCTTGCTTACCCGTCTTTGGTTCCAAACTGAACAAAAAAGGC
GGAAAGACAATCTACCCCAGCCATAGTGCATTCCAAAAGTTGAGTGCCAT
TCAACAAAGATCAGTCCACGGTCGACTGAAGTTCGACAAAGTGAGTGATG
ACAGTCAGGTGGCCTTATCCATAACAACGTCAAATTTCATAAAACAGCAT
ATATAAAAACTGTCTGAAAGCCAACCTTAACAGACAATGGTTAATGTTTT
CATGGCGGAAAGGGAGGGGTAGCTGCCTCTCTATTGTGAAGGGAACAGTC
GATGATGTTTTTGCAGTGTCATGTGTCATGCTTGGTTGATAAACTGCACT
AAACGTCCATCTTCTTGGTGTGTACCATCCTAAATACCAGCAAACGTCTC
AAAATCAATTTTCGCATTTTTGTCGTAAAGTTTGCATAGAATGCCCTCAC
ACTACTGTT Coding sequence (CDS) from alignment at Sc0000002:1011705..1014513+ >transcript:BL73179_cuf0 ID=transcript:BL73179_cuf0|Name=transcript:BL73179_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1551bp|location=Sequence derived from alignment at Sc0000002:1011705..1014513+ (Branchiostoma lanceolatum)
ATGGGGATAGAAACTGGCGTCGAGTCGGACAACTATACCAGTCCGTCCAG
GAAAACCCCTTCGGCTTCCCAGGGGTCGATTTTGAAGAGGGAACCGAGTA
GCAAGACTGTGCGGACTCGGGGCTCCTCGACCCCGAAGAAGTCGGTGTCC
TTCGACCCGACCCCCGAAGTTTTCTTCGTCCCTAGCCGCTGCGAGAGTAG
AACAGACAACGCAGGTGCTCGCGTGAGTCCCCAATCCCCAACAGATGTTT
CAACATACCTTCTTCACTATCAGGGGAGCAATTACGAGAGAACTAAGTCT
TTAAAATGGGACTCTAGTGGTCACAACGTGACTCAACCGCCAGGAGCATC
TGTTCCCACGGGCATACACGCGGAGTTGTACAGCGTTGCTGCTTCGCTAT
CAAATCTCGTACCTCGCAGACGTCTCAGGGATCTACTAGTCAACACGGAG
GACTTACAGGTGAAGATGAAGAAATTCCAGGAGGATACGGATGCCCCAAC
AACGGAGGAAGAAGGCAAAGATGCTACAGGCCCGGGAGGGACTCGAAAAA
CGGAGCCTGCCAAGACGTTACCGCTAGCAAAACCTACACGTCAGATAAAA
CCGTTTAGGATAAATATCACCAGCAAATATAGTCAGCAAACGGATATAAA
AAGGACAGCACCGGTCATTGTAGGCCTCAAACCCAAAATTAAGCCCAAGA
ATTTTGAAGAACAACCTTCGGTGTTTAAGAGGCTGTATTTGCATTCTCAT
CCAAACGAAGGTCCTCCGAAGGAAGAGATTAAGATTCCTGAGATACCCAA
GAAGGCTACAAGACCGATTACAGCGGTCACTACCAAGAGTTCGCGAAGTG
AACGAAATCTCGCGGCCCCGCGAGTACGGGATCGGGACAGGGATAAGGAT
AAGGACAAGGAACGTCACCACCATCATCACCACCATCATCACCATCACAG
AGATAAAGACAAAGACAGACATAGAGACGCAGATAAAGAAAGAGAGCGGC
AAAAGGCAAGGGAGAGACTATATGGTACAGCTAGTCGCGGGAATTCTCGA
CCCAAAGCGGCGAAACCGACGCCGGACAGACCACCCCCTCGCCCGCCTCC
TACAACGCCGCCTGCGCGGTCATCAAATCACAGGAGACCGCCGAGTCGCA
GTGCTAATGTTCCCGTTGCACCGTCGCAACCTACTCAACCTAAACCTGTG
GAAAAGACAAGACCACCGCCAGACGACCGCGCGCGCTTGTTCCCTAGAAC
TGCCCTGGAGAAATTCGTGATGGCAGAACTCCAACGTTCACGTATATCTC
ACATGGTGCCTTCGGCTGCACCCTCAAACCGTGGGTCACCAAACGAGAAC
ATAAGTAAAACTGCTCGTCCAACGCCTGCCTTTAAACTCCCAGACAGTGG
GGTAAGACATATTGGATACGCTAGTACAAGAGAGAGGAAAGTATCATGGA
GAACAGGTGAGGTAGAGCCGATAGAATCCAGCTCTAGCAAGCACACTCCT
CAGATCATGAAGCGATTCAGTATCGCCTTCAGATCGCCTGTGAAAGTGTA
G
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000002 | genome | Sc0000002:1011705..1014513 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL73179_cuf0 |
| Biotype | protein_coding |
|
