transcript:BL72067_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL72067_cuf0
Unique Nametranscript:BL72067_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL72067_cuf0

>transcript:BL72067_cuf0-protein ID=transcript:BL72067_cuf0-protein|Name=transcript:BL72067_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=235bp
EDVPCEYPCGVKSDHPPVQGCTQQTNRLEAKRTVEKRFACAECDYRASRK
TSLSLHMRTHTGEKPYKCDQCDYSAARKSNLDRHAATHTGDKPYMCGECG
YRTDYRYSLTEHMNRHTGEKPYKCDQCDYSAAQKRTLDRHMTKHTGEKPA
YMCGRCGYRTANRCTLTAHIRIHTGEKPYKCDQCEYSSARKGDLDKHMAN
HTGDKPHMCEQCGYRTSHRPHLTRHMTKHHTGVKE
Run BLAST on NCBI

mRNA from alignment at Sc0000004:6029210..6030123+

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL72067_cuf0 ID=transcript:BL72067_cuf0|Name=transcript:BL72067_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=914bp|location=Sequence derived from alignment at Sc0000004:6029210..6030123+ (Branchiostoma lanceolatum)
GAGGACGTTCCATGCGAATACCCGTGCGGGGTAAAATCTGACCATCCTCC
CGTACAGGGTTGCACACAACAGACGAACAGGCTTGAGGCGAAACGCACTG
TGGAAAAACGCTTCGCATGTGCAGAGTGTGACTACAGAGCATCACGAAAA
ACAAGCCTATCATTACACATGAGAACTCATACAGGTGAGAAACCCTACAA
ATGCGACCAGTGCGACTATTCCGCAGCAAGGAAAAGTAATTTAGACCGAC
ACGCGGCTACACACACTGGAGACAAGCCCTACATGTGTGGAGAGTGCGGG
TACAGGACGGATTACAGGTATAGCCTAACTGAACATATGAATAGACATAC
AGGTGAGAAGCCCTATAAATGTGACCAGTGCGACTATTCTGCTGCACAGA
AACGCACCTTAGACCGACACATGACAAAGCACACCGGAGAAAAACCAGCC
TATATGTGTGGGAGATGCGGATACAGGACGGCTAACAGGTGTACCCTAAC
CGCACATATAAGAATACATACGGGTGAAAAACCCTACAAATGTGACCAGT
GTGAATATTCTTCTGCACGGAAAGGTGATTTGGACAAACACATGGCTAAC
CACACTGGTGACAAACCTCACATGTGTGAGCAGTGTGGATACAGAACGTC
TCACAGGCCTCATCTAACACGACATATGACAAAACATCATACAGGTGTAA
AAGAATGAAAACCATAGACATGTGTCATGTGCAATTATCGCTATAGGGAA
TGCAGACTATGCACAACCCTCTATGTGTGGAAAACATGAGTTAATGCAAG
CTCTAAGGTCCACCGCACGCATAATATTAAAAGCTTAGGTTTTATTCCGT
AACAGGTCTTAGAATATTTTAAAGTTTAGATTGTAGCAGTTCCGTAGCAG
TTTTTATAATAGTC

Coding sequence (CDS) from alignment at Sc0000004:6029210..6030123+

>transcript:BL72067_cuf0 ID=transcript:BL72067_cuf0|Name=transcript:BL72067_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=708bp|location=Sequence derived from alignment at Sc0000004:6029210..6030123+ (Branchiostoma lanceolatum)
GAGGACGTTCCATGCGAATACCCGTGCGGGGTAAAATCTGACCATCCTCC
CGTACAGGGTTGCACACAACAGACGAACAGGCTTGAGGCGAAACGCACTG
TGGAAAAACGCTTCGCATGTGCAGAGTGTGACTACAGAGCATCACGAAAA
ACAAGCCTATCATTACACATGAGAACTCATACAGGTGAGAAACCCTACAA
ATGCGACCAGTGCGACTATTCCGCAGCAAGGAAAAGTAATTTAGACCGAC
ACGCGGCTACACACACTGGAGACAAGCCCTACATGTGTGGAGAGTGCGGG
TACAGGACGGATTACAGGTATAGCCTAACTGAACATATGAATAGACATAC
AGGTGAGAAGCCCTATAAATGTGACCAGTGCGACTATTCTGCTGCACAGA
AACGCACCTTAGACCGACACATGACAAAGCACACCGGAGAAAAACCAGCC
TATATGTGTGGGAGATGCGGATACAGGACGGCTAACAGGTGTACCCTAAC
CGCACATATAAGAATACATACGGGTGAAAAACCCTACAAATGTGACCAGT
GTGAATATTCTTCTGCACGGAAAGGTGATTTGGACAAACACATGGCTAAC
CACACTGGTGACAAACCTCACATGTGTGAGCAGTGTGGATACAGAACGTC
TCACAGGCCTCATCTAACACGACATATGACAAAACATCATACAGGTGTAA
AAGAATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL72067gene:BL72067Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL72067_cuf0-E1BL72067_cuf0-E1-1564476830-55077Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL72067_cuf0transcript:BL72067_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000004genomeSc0000004:6029210..6030123 +
Properties
Property NameValue
Transcript idBL72067_cuf0
Biotypeprotein_coding