transcript:BL07427_cuf4 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL07427_cuf4
Unique Nametranscript:BL07427_cuf4
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL07427_cuf4

>transcript:BL07427_cuf4-protein ID=transcript:BL07427_cuf4-protein|Name=transcript:BL07427_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=209bp
MFEQGKGPAEYFRGYDYNTGMAYLANHPKGHQMCQGTLLVYVFDLKRVMA
HMDLMHKHPRLKTLYKPRKFHAPTPFEDDALRAFLKDQKSEKKKRSLNRK
SRHARRRADRKHRRDIIRHGDDAIVSVDDISDDERTVTHAQDEFSGEMDY
DVSAFAAPDDQSEVTPSNPSRCVETRDCRRYCSRWDEGPFWRYCLKFRVT
CKFVCKRHH
Run BLAST on NCBI

mRNA from alignment at Sc0000203:441766..444652+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL07427_cuf4 ID=transcript:BL07427_cuf4|Name=transcript:BL07427_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=2887bp|location=Sequence derived from alignment at Sc0000203:441766..444652+ (Branchiostoma lanceolatum)
GCCCTTAATAACTCCCCGGGTCCTGACGCGCCCAGCCAACCGCGGTAATC
GGTGACCTTTAGGCTGCTTTTGATGTTCCTAACGACGCGGTGCACGCTGG
GACGGGTGCGGCTTGGAGACCGGAGTTTGGCGTAAAGAATGCCGCCGGGA
CAAAAGAGCGGGAGGGGCGTTACCATGGTTACTGCCAGGACGTTAGCTGC
GGTTTCTGTCAGCATTCTCGGAAAGTTCACATAAAAACCGTCTGACCAGC
GGCGCCGCCGGTCTGTCCGACAATGATTAAAAAGGCGCGGAAATCCTCCG
CATCGATTCGGACACTTTCAGCAACCAGCGAACCAAATAATCATCTTTGC
TCCGTTTTTCCTCCAGCACTTCGTCATCTTCCGCGTCAGCAAGTGTCACC
AGCTCAGCTTCCCGGTCTGCTACGTCACCACGACCCTTGACCTCGGCAGA
GACGAGCTGACCCCAGACGACGGACAGTGGCGCGAACTCATCGGCATGTT
CGAGGTCAGTTGGGGTCACCTGTTTGTTTGTTTGTTTGTTGTGTTTACTT
TGATAGTAATGGCGTCAATTGTAACACCTCTTGGTAAAATTGACAATCTG
GAACCAGAGAATGTACTTACTATACTAACTTATTACAAATGACAAAGTTT
TGGTAACATTAAATAACTTATTGGGCGAATGTGTTTTCTAATTCAGTGGC
AAGAAGTAGCTTGTTTTTTTGGCGGCGCCTCTGGGCGGGGCCTTTATGTT
GTAACTGCACGTGACTCACCTCCCGCTGTTGTCTCCCCGCAGCAAGGCAA
AGGGCCGGCGGAGTACTTCCGCGGGTACGACTACAACACCGGCATGGCGT
ACCTGGCCAACCACCCCAAGGGCCACCAGATGTGCCAGGGCACTCTGCTG
GTCTACGTCTTCGACCTCAAGCGCGTCATGGCGCACATGGACCTCATGCA
CAAGCACCCGCGGCTCAAGACGCTCTACAAGCCGCGCAAGTTCCACGCAC
CCACCCCGTAAGTACTTCTCCCATAACGCACCCACCCCGTAAGTACTTCT
CCCATAACGCACCCACCCCGTAAGTACTTCTCCCATAACGCACGCCACCT
GCAGTCCTTAGGACTAGACGTAGAGCCATGGTTCACTGTTCATTGTGCTT
GTCGAAAAGATCTTGGGGAATTTCCCCGGTACTGTAATATTGTACATAGC
GTCTGTCTTCTCTGTCACGACCAGTGGAAGAGTAGCTCTTCATTCAGTGA
GCTGAACTGAATCGATATCACTTTTACTTAACCACCTTGGACAGGGGGTT
ACAGACCTTCACTAGTCAACACCCTTCACAGTCCAGTTCCGCAGACTAAT
CATGACCTATGACCCCGTTTCTGCGCAGGTTCGAGGACGACGCCCTGCGG
GCTTTCCTGAAGGACCAGAAATCCGAGAAGAAGAAGCGATCGCTGAACCG
GAAGTCACGTCACGCCCGCCGCCGCGCCGACCGGAAACACAGGCGTGACA
TCATCAGGCATGGGGATGACGCCATCGTCAGCGTGGACGACATCAGTGAT
GACGAGAGAACAGTGACGCATGCGCAGGATGAGTTTTCCGGAGAGATGGA
CTATGACGTGTCAGCGTTTGCAGCACCTGGTGAGTGTGGGCTTGCTGCTC
TCAGTGTTCGATGCTAATTTCCGTCTCGTAAACAATGTCAGCCTTTTGAA
ACGGTCATCGACAAAAGTTATGAAACGCTCGGATAAGGTATGGACGGGTT
GGCATTATGGCGATGACCGTTTGAAATGGCTACAACCCGTTTCGAGATGG
ACACGCGCTTCGGCGTAGCCCACCCCTCAGGCTACTTACCGGGCTTAGCC
TGGCCGCAGACACACATAGACGTATTCCCACAAATGCCTGGAAAGGTTGG
CTATAGGCCCCCAACTGTAGGGAGTCGGCTGTGGGTTTGACATACTCCGA
CCACGAAGCTGCTGCATTCGTAGATTCACAGGTTGTGAAAGGTGATATAT
AACCTTCGGTCGGTATATATATAAAGACAATTCAAAGTCTCCAACTTGAT
ATAATTCGGAGATTTGATTCCGGGCGTTAAGGGTGTAGATAGTCTGTTGC
TATGTGTTCAGCCTTGTTTCTAACGTTGCTCCCTGTTATTCCCACAGACG
ACCAGTCGGAGGTTACCCCTAGCAACCCGTCCCGCTGCGTGGAGACTCGC
GACTGCCGGCGGTACTGCAGCCGCTGGGACGAGGGGCCCTTCTGGCGCTA
CTGCCTCAAGTTCCGCGTCACGTGCAAGTTCGTCTGCAAGAGGCACCACT
GATTGGTCAGCGCCACGACGGACACGCTGCTGACACGTGACCATCACATG
AGGAACTAGCTACAGACACGTGATCATCACACGACAAACGGGACATTGCC
AGAAATCACGTGACAGATAGGGCTAAGTAACTTTAGCCAAAATTGAACTT
TTGAGTGCAATCAGGATCCAAAGTCGTTGCTGGGAGACGGAGAATCCCTG
GGTTATAAACTTGACAATCAGAATGTACAGAATTATTTATTGCAATTCTT
CAGCCGTCCGCTGGGGGGTGCTGTAAAACTATTGCGTCAGTCGCACAACA
AGCGGTTTCCACACCGCGCATTTGTACAGAAGAACCGACTGTGTTTGATA
TAGATGTTATGTAAGAGTCTTATTTATCTAAGTCGTTATTTATTTGTTCC
ATAGAGATAAACTATCGGCTTATGTGGGCCGTGATAAACAATCGGCATAT
TTGTGCCGTGCGACAGAGTTATGTAAAGCTGAGCCCAATCATTCCCAAGC
CTGAATTCTTGCCATGTCGAGAATAAACATACAAACTGAGTTGGTCTCCT
CGCCTCAATGCAGACGTCATCATTAGTAAACATACAG

Coding sequence (CDS) from alignment at Sc0000203:441766..444652+

>transcript:BL07427_cuf4 ID=transcript:BL07427_cuf4|Name=transcript:BL07427_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=2520bp|location=Sequence derived from alignment at Sc0000203:441766..444652+ (Branchiostoma lanceolatum)
ATGTTCGAGCAAGGCAAAGGGCCGGCGGAGTACTTCCGCGGGTACGACTA
CAACACCGGCATGGCGTACCTGGCCAACCACCCCAAGGGCCACCAGATGT
GCCAGGGCACTCTGCTGGTCTACGTCTTCGACCTCAAGCGCGTCATGGCG
CACATGGACCTCATGCACAAGCACCCGCGGCTCAAGACGCTCTACAAGCC
GCGCAAGTTCCACGCACCCACCCCGTTCGAGGACGACGCCCTGCGGGCTT
TCCTGAAGGACCAGAAATCCGAGAAGAAGAAGCGATCGCTGAACCGGAAG
TCACGTCACGCCCGCCGCCGCGCCGACCGGAAACACAGGCGTGACATCAT
CAGGCATGGGGATGACGCCATCGTCAGCGTGGACGACATCAGTGATGACG
AGAGAACAGTGACGCATGCGCAGGATGAGTTTTCCGGAGAGATGGACTAT
GACGTGTCAGCGTTTGCAGCACCTGACGACCAGTCGGAGGTTACCCCTAG
CAACCCGTCCCGCTGCGTGGAGACTCGCGACTGCCGGCGGTACTGCAGCC
GCTGGGACGAGGGGCCCTTCTGGCGCTACTGCCTCAAGTTCCGCGTCACG
TGCAAGTTCGTCTGCAAGAGGCACCACTGAATGTTCGAGCAAGGCAAAGG
GCCGGCGGAGTACTTCCGCGGGTACGACTACAACACCGGCATGGCGTACC
TGGCCAACCACCCCAAGGGCCACCAGATGTGCCAGGGCACTCTGCTGGTC
TACGTCTTCGACCTCAAGCGCGTCATGGCGCACATGGACCTCATGCACAA
GCACCCGCGGCTCAAGACGCTCTACAAGCCGCGCAAGTTCCACGCACCCA
CCCCGTTCGAGGACGACGCCCTGCGGGCTTTCCTGAAGGACCAGAAATCC
GAGAAGAAGAAGCGATCGCTGAACCGGAAGTCACGTCACGCCCGCCGCCG
CGCCGACCGGAAACACAGGCGTGACATCATCAGGCATGGGGATGACGCCA
TCGTCAGCGTGGACGACATCAGTGATGACGAGAGAACAGTGACGCATGCG
CAGGATGAGTTTTCCGGAGAGATGGACTATGACGTGTCAGCGTTTGCAGC
ACCTGACGACCAGTCGGAGGTTACCCCTAGCAACCCGTCCCGCTGCGTGG
AGACTCGCGACTGCCGGCGGTACTGCAGCCGCTGGGACGAGGGGCCCTTC
TGGCGCTACTGCCTCAAGTTCCGCGTCACGTGCAAGTTCGTCTGCAAGAG
GCACCACTGAATGTTCGAGCAAGGCAAAGGGCCGGCGGAGTACTTCCGCG
GGTACGACTACAACACCGGCATGGCGTACCTGGCCAACCACCCCAAGGGC
CACCAGATGTGCCAGGGCACTCTGCTGGTCTACGTCTTCGACCTCAAGCG
CGTCATGGCGCACATGGACCTCATGCACAAGCACCCGCGGCTCAAGACGC
TCTACAAGCCGCGCAAGTTCCACGCACCCACCCCGTTCGAGGACGACGCC
CTGCGGGCTTTCCTGAAGGACCAGAAATCCGAGAAGAAGAAGCGATCGCT
GAACCGGAAGTCACGTCACGCCCGCCGCCGCGCCGACCGGAAACACAGGC
GTGACATCATCAGGCATGGGGATGACGCCATCGTCAGCGTGGACGACATC
AGTGATGACGAGAGAACAGTGACGCATGCGCAGGATGAGTTTTCCGGAGA
GATGGACTATGACGTGTCAGCGTTTGCAGCACCTGACGACCAGTCGGAGG
TTACCCCTAGCAACCCGTCCCGCTGCGTGGAGACTCGCGACTGCCGGCGG
TACTGCAGCCGCTGGGACGAGGGGCCCTTCTGGCGCTACTGCCTCAAGTT
CCGCGTCACGTGCAAGTTCGTCTGCAAGAGGCACCACTGAATGTTCGAGC
AAGGCAAAGGGCCGGCGGAGTACTTCCGCGGGTACGACTACAACACCGGC
ATGGCGTACCTGGCCAACCACCCCAAGGGCCACCAGATGTGCCAGGGCAC
TCTGCTGGTCTACGTCTTCGACCTCAAGCGCGTCATGGCGCACATGGACC
TCATGCACAAGCACCCGCGGCTCAAGACGCTCTACAAGCCGCGCAAGTTC
CACGCACCCACCCCGTTCGAGGACGACGCCCTGCGGGCTTTCCTGAAGGA
CCAGAAATCCGAGAAGAAGAAGCGATCGCTGAACCGGAAGTCACGTCACG
CCCGCCGCCGCGCCGACCGGAAACACAGGCGTGACATCATCAGGCATGGG
GATGACGCCATCGTCAGCGTGGACGACATCAGTGATGACGAGAGAACAGT
GACGCATGCGCAGGATGAGTTTTCCGGAGAGATGGACTATGACGTGTCAG
CGTTTGCAGCACCTGACGACCAGTCGGAGGTTACCCCTAGCAACCCGTCC
CGCTGCGTGGAGACTCGCGACTGCCGGCGGTACTGCAGCCGCTGGGACGA
GGGGCCCTTCTGGCGCTACTGCCTCAAGTTCCGCGTCACGTGCAAGTTCG
TCTGCAAGAGGCACCACTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL07427gene:BL07427Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL07427_cuf4transcript:BL07427_cuf4-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL07427_cuf4-E1BL07427_cuf4-E1-1564476830-385824Branchiostoma lanceolatumexon
BL07427_cuf4-E2BL07427_cuf4-E2-1564476830-385826Branchiostoma lanceolatumexon
BL07427_cuf4-E3BL07427_cuf4-E3-1564476830-385828Branchiostoma lanceolatumexon
BL07427_cuf4-E4BL07427_cuf4-E4-1564476830-385831Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000203genomeSc0000203:441766..444652 +
Properties
Property NameValue
Transcript idBL07427_cuf4
Biotypeprotein_coding