Blg01039.1 (mRNA) - B. lanceolatum

Overview
NameBlg01039.1
Unique NameBlg01039.1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000003:2246540..2248887+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg01039.1 ID=Blg01039.1|Name=Blg01039.1|organism=Branchiostoma lanceolatum|type=mRNA|length=2348bp|location=Sequence derived from alignment at Sc0000003:2246540..2248887+ (Branchiostoma lanceolatum)
TTCCCCTGTACGCATGCGCTAACGTCACCGGCGCGTTTTCCGCCATTTTC
CTCCTGAGCCGAAACGGGACTTCTTTGTTTCCCTGTCTCCTTTTCCACAG
CATTCCGTCTGAACTACCGCAGCAGCCATGGCGTACAAGGGACAGAAGGT
GCAGAAGGTCATGGTGCAGCCCATCGTATCCTTTTTGTGTGGTTCGCAGG
GATGCTTACATTGTTTTTGTTGTTCGGTGAATTTTGCACGTGTGCCCCCC
TCCCCATATCCACACCTTGACCACTTGTCATGTTTTATGTCTAAATCACA
TGTTGCGTTCAGGTTTTTCACTGGATCAAATCAGTATGAAGTTACAGAGT
TGCTTCTTTCATTATTTAAGATGATACTGTATTCACTTATTTCTTACTGG
CCTGGCTTATGAAAAATACTGAATTTAAATGTCCAACAATAGAAAATAAT
TAGATTGAAAGATTTATGCAATTTTCCTTAACCAGACTTTTTCAGAACTT
GATCTTCAGATATCTGCAAAACGTAAGTACACATTAGAACGTCAATGATA
ATCTTTTTCAAGTGCCATTTGTCTTTCAGTACTGGCTGCATATCTTGACT
TCTTCTTTTATAAACCATTATTGTTATAATTGTATCATGGCAATTATCAC
AAAGATGATTTGTTTCCATATCATCTAAGAAGAAGCTGAACAGTCTGACC
TGTGCATGCTTTACAGTTCACAACTGTAGTGGTCCAATTGCAACTTCAAT
GTACATGAGAAGAGCATTTTTTTTCTCTCTCTGATTCAGTCTGAAGTGGT
TAAGAAGACTTTATTTTTATATCATCCTGCAGCGCTCACGTATCCAGATC
TGGCTGTACGAGCAGACCAACATGAGAATCGAGGGACACATCATCGTAAG
TTGGGGAACCTCCAGATAGATCATAAACTCATTCCAATAATGACATTGAC
AAATTATGTGCTACCAACCATTTAGCAACAGCCACCCCCCGCACACACAC
CCAACTACTGCTACATGTAGGTACAACAGTATCATACCATTATCAATTAA
CATTAGTATGAGTTGATGAAGCTTACCCATTTATGTGAACCACAGCAATC
ATTTTCAGTTAATTTTATTCCTTCAGTTTGTCTTTCCCTGTAATGTTTTT
GCCTCTCTCCCTTGATTTCATTGTAATGTCTTTTCTTTGTTAGCAACAGG
CTTGGTCAGCCCTGGCTGCGTGTGCTGAACAGCCAAGGCAATGAATGAAT
AACTTTTGCCTCTCCTCGCAGGGTTTTGATGAGTACATGAACCTGGTTCT
GGACGATGCTGAGGAGATTCACCTCAAGACAAAGAACAGGAAGCCGCTGG
GTAAGGAACCAAGTCTTCTGTGTCTTTGATTTATTTCCTCCACTCTTCAC
GTTTTCTCCTTGTTTTCTCTTTCTTCACTCCATCTTTTCTATCTCTTCAT
CCCACCTTACTGGTCACTCTTTCATACTTAGTATTCTCCAAACTAAGAAG
CTTGGCAGAGAGCAACATACATGTGAATGTTTCCAACTAACTTTCTTTTT
GTATTTTTCTCATTACTTCTCTGAAAAAAGGTGATAAGTTGCTTCTGTCA
TTTTCATACTACATGTACCTCTATTATCTTCTTGGTAGACCTCTGCCTGT
CACAAGCAATGATGTGCTTTTATTTGTTCACCAACAGTTTTGTGTAGACT
GTAGATGATTATTTCTTGTGTTTTTTTGTTCTCTTTAAAGATATAAACAT
TTATTTTTCAGGTCGGATCCTTCTGAAAGGAGACAACATCACCTTGATAC
AGAGTGTCAACACACCTTGATACAGAGTGTGGACACTTAAGTCTGAAGAC
TCCCCCTGAACATTGTCATAGACAAGTCTGTAGTACTGTACATCCTCTAT
ACTCCACAGTATATATTGCAATCTTGTGTTATGTACTTTGAACAATATCT
CATTTCTAGTGTATCGATAACTTTTGTGGTAGCTTGGATGTATTGAAGAT
ATCAAGAGAATCACTTTGGCGAAATTTCCTATTTTCTGAAGATGAGATTC
AGTTATATACTAGTACATGTATGTACTGTGCCTGTATTTCAATTATGTTT
CCTTTGTAGGTAAACCTAACATTTTCTATGAAATATTCAGGGTAGTTACT
TTTATGATATAATCTTTTTTTCCTGGGTAAATGGGGAGATAAAAAACCCA
ACATTCTTCAAGGAATCATAAAATGAGTTACTTCTATTGCAAGAAGCAAT
ATGAAGCTGAGGTTTGCCTATACCCTCAGAAATGTGGGTGAAAGACCACA
TTGATAGACTCATTGATTGTTTCATAAGGTGGGCTAAGCTGAGTGTCA

Coding sequence (CDS) from alignment at Sc0000003:2246540..2248887+

>Blg01039.1 ID=Blg01039.1|Name=Blg01039.1|organism=Branchiostoma lanceolatum|type=CDS|length=276bp|location=Sequence derived from alignment at Sc0000003:2246540..2248887+ (Branchiostoma lanceolatum)
ATGGCGTACAAGGGACAGAAGGTGCAGAAGGTCATGGTGCAGCCCATCAA
CTTGATCTTCAGATATCTGCAAAACCGCTCACGTATCCAGATCTGGCTGT
ACGAGCAGACCAACATGAGAATCGAGGGACACATCATCGGTTTTGATGAG
TACATGAACCTGGTTCTGGACGATGCTGAGGAGATTCACCTCAAGACAAA
GAACAGGAAGCCGCTGGGTCGGATCCTTCTGAAAGGAGACAACATCACCT
TGATACAGAGTGTCAACACACCTTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg01039.1Blg01039.1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg01039.1-exon-Sc0000003-1570713199:2246540..2246714Blg01039.1-exon-Sc0000003-1570713199:2246540..2246714Branchiostoma lanceolatumexon
Blg01039.1-exon-Sc0000003-1570713199:2247035..2247061Blg01039.1-exon-Sc0000003-1570713199:2247035..2247061Branchiostoma lanceolatumexon
Blg01039.1-exon-Sc0000003-1570713199:2247372..2247434Blg01039.1-exon-Sc0000003-1570713199:2247372..2247434Branchiostoma lanceolatumexon
Blg01039.1-exon-Sc0000003-1570713199:2247811..2247889Blg01039.1-exon-Sc0000003-1570713199:2247811..2247889Branchiostoma lanceolatumexon
Blg01039.1-exon-Sc0000003-1570713199:2248301..2248365Blg01039.1-exon-Sc0000003-1570713199:2248301..2248365Branchiostoma lanceolatumexon
Blg01039.1-exon-Sc0000003-1570713199:2248388..2248887Blg01039.1-exon-Sc0000003-1570713199:2248388..2248887Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000003genomeSc0000003:2246540..2248887 +
Properties
Property NameValue
GeneIDBlg01039