BlTCONS00062998 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00062998
Unique NameBlTCONS00062998
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000050:158677..168538-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00062998 ID=BlTCONS00062998|Name=BlTCONS00062998|organism=Branchiostoma lanceolatum|type=mRNA|length=9862bp|location=Sequence derived from alignment at Sc0000050:158677..168538- (Branchiostoma lanceolatum)
ATTTATGTCCACATTCCTCGGGTGAGGAAGGTTCAGTCGATACTTGGGTG CCATATTAGAATGTAGCATTTTTTTAATACAAACTCTACAAAAAAATTGC AAAGTACAATCAAGTCTGTTTTGGTTGGTGGAAGGGTGATTTCTATAACT TTTTGTACCGCCTTCTTTCTTTTGTTAAAAGCTTTTAGAAATCTGACAAG TTGTGTTTTGTTTGACATTTCTGTCAATGTCATTTGACATAATTAGAATG TAGCAATTTTGAAACAAAATTTACAGAAAATGGCAGAGTACAATCAGTCT ATTTGGGTTGGTGCAAGGGTGATTTCTATAACTTTTTGAACAACTTTCTT CTGTTAAAAAGTACAGCTTTAAGATTTATAAGTCTAGAAGAGTTTGTTTG GTTGGGCTTCACTAATATTTTATGTAGAAATATTATTAGTACATGTACTA TGTTTCAGTCTGATATCTTGAATAGTAGTGTAGATTTAAGTCTTGTTTGT AAAAGAAGTAGAGTTGTTTTAATCTGACAGTAGTATTAGTGTGTGTTTTG TTGGATTGTACTAACAATTTTATTAGACATAATTAGCACATACTAGTTGG CTGGTTGATATCTTTATGAGTGTAAGGTTAATCATATCTATCATGAAGAA GGATTTTTAACTGCAATTTTTAACACAAAGGATTCGACTTTAAAATTCCA ACATTTTTGGCTATACTACAATGTATACATTGTGTTGGAAAATGCAGCTA AAAACCTACTTTCATATTGAATTCTACCAACTAATACATGTACAGATGAA CTTTTAAGTTAAGTCATAACTGTTGTTTGTAACAAAATATCAGGCTAACT TTTGCTTCAAATTTGATTGTGAAGTCTGAACTCAGTGCAGCTTGTATAAC AACTGCTCACTATCCTTCTCTTACAGTGAGAAACCCCAGCCCCTACCTCG GAACAAGGCAGTATTAGACCGAGGGACGCCCCCCACCCCACCTCCCAAAC CTCGATCGTCTTCCATGCCGACACAGCCACAAGGTCAGTAAACTTTACCT TTCACACTGTTCCAAGGTCAAGGCTTTTTCCCTTTCATGCTGTTCCTAGA CGTTCAATCCTACAGATGTTTGTGTTTTTCCCCTTCTTCTGTCTTCTGTA TACTTATTACGGAATTATTACTTCTGGAATCTTGTATGCAAGATGCCAGA AGGAAAGTTTTGTTGTCAACAAAATGGTACCGTAGAGAAAAACTGTATTT ACATGTATGATTTGTTGCCCCTGAGTTAGAATACATTTCCCTATTCTATA TAATTTATGTCTTCAATTCCTGAAACAGTTCCAAGACCAATTATCCCAGG ACGGGGTGTGTGCATGTTTATCCAAGTAAAAAACTATTTCCTTGTAACAT TACTGGAGTATTATAATTATACGTACTTAATGTTACTCTCAAAAATGATT TGACAATGATGTGTGTGTTCCCCAGTTGTTCCCATCAAAATCTCCATAAA TGTTCCAAGTCCAGGGGCTTCCCCAGGTACACAAACTCTGCTCAGGTGTT CAAGCACTGAGATTTCTGACTTTCACAGGGGGTAGATTTAGTGGTGAATT GAGAAGGATTGTAGTAGCCACAACTTAGGGTTGTAAGAGGGGGAGAAAGG TGCCTGGAGTTTCAAACTAACTTTAAAGGTGGATTAGTTATGGAGAGGTA TGGACAGTTCTAATACAGAAAATGGTCACCTTTTCAAATTTTGACCTTCC GCCTATTGAGGTACAGCCCAAAAATACAGCCCTTTGGCACCAAATACACT ACCAAAAATTTGTTTTCTTATTTTTCTTGTTGTTTCTTATACACAGGAAA CAATTCTTAAAAGAAGAAAACTTTCTGTGTTTAAGGAAACCATTTTGTCC ACGAGTTAAGAATTTTTTTCTTAAGTAATTTTTTCTTAGAAAATTTGTCT TAATTCAAGAGAGAGGGGAGAAGAAAAATCTTATATTTTCTTAGCAAAAC AAGAAAAATACTATTGAAGTTAATAAAAACAAGAAATTCAGACTTGGATT TCTAGAAATTCTTAATGGTTAAAAACTTGCTGAGAAATAGTTTCTTAACT TAATAGAATTAGGAAAGTGTTCCTTGTTATGAGAATTTCCATGGAAAAGA TCAGACAAATTCTTCAATTTTTCCTTCTTATTCATTCTTGAAAATCTTAA TATAAGAAAAGTTGTCCACGAGTTAAGAAAAAACAAGAAAAATCATTTTT ATACAACAGTAGATGAAATGTAAAAGGTGTTTTTTTATCTTCTTCTTTTT TTAATCTACATGTCCAAAGTTGTCATTGTTTTATTTGTTGTGTTTTTGTC AATACAACTAGCCTCCACGCAAGATTTTGAAATTAACTTGTTATTTTTTA TTTTCCAGCTGCCCCTCGGAAGTCTGTGGACAGCCTGTCCATGAACAGTG CAGAGGGAGATATCGACAGCTCACCTGACAGGAGCCCCTCTCCTGTACCC TTACCTAGAAAGACACAGCCAGTAAGTTTTCCCATAGATTATCCTCTCAC ACAAAACAATGTCATATTAAGGTCTGCTAACATAATTTTTTCCTGAGGTC ACATCTATTCCCCACCCTGAAAAATGTGTCTAAAGAGATCTCCAATGCAA CGTCCCCCAGAAAAATGCTCTCTTGCATATCAAAACTGTGTATACCTGGG GAGGGGGGGTTGCACTAGAGATCTTTCGAACACACTGTTAGATGTATGAA CTCCTTTGCTTGCTGAAAAGATAATAAATTTTGGCCAAATAGGACAGACT TAAAATTCACCCCATTTTGCCAAATTCAACCATTTTTTTCAGCAAGCAAT GGAGTCTTAGTTATTTCATTTGGTTCTTAAAGTGGGGGAATTAAAGAATT AGCATGACATTTGTATGTCAGTTAGACAATGCATGTGCATGGAAAAGTTT ACCAAACAGAAAAGGCTTGTGTAATGTTTGTCCTGCTATCATCCATTGTG ACTGTTAAGTTCTCTGCATGAAAAACTGAACATTGTTTTGTTTCAAAGTC ATTGCTCTTTCCTTTTTAATCTATTTGTCACACGTGTTGCATTTTCAGTT CTTATGTGTACATTGTATTATCTACTTTGCATTGTCAGTAGCAGCCATTG TCTGCTCAGGCACAGTATCTTTTTTAACAATCTTAATGCTTGGAAAAAAA GTCTTAAAAAGTCTTAAAACTTCTACTAACATGTTGGTCGATGATCTTAA CCCCCCTCACCCTGCTGCCCAGTTTCTGGGAGGATTTTTGACCAGGTATG AGGTGAGGAGAATGTAACGTGCGAAACTTCAAATTTTCAGTCAGGGACCC ATTCTGTATAGTTACACTGTACTGTTACTGTAACTACTCATGTTGCATCT AATGCACAGTGGAAAAATGTAGGTTTTTGACAGAAGAAGGTACTGTTTTC AATTGAACAAGTCAGGAAGTCTGTCAGTTGAAAATAGGTACAGAATGTAC ATTAGTACATACATGTATGCTAGTACTACATGTACATACATCTGTAACTC ACCCATGTGTTTCTGTCTTTTTTTACAGCTATACTTTACAATGTCATGTA TGTAACTACGTATGGTAAAATATTTTGTTGGACTAGCCTTTTTACAGCAT ATAAATTAATCTTTTATATCACTGATGATTTTACATTGTACTTATTTGCA GATGCAGAACAAATCAAAGAGTAAATGACTTTGACATGTTCAAACAGATC TATATCGTGCATGTAGATAATTATACAATGTACTAGTATTCATTTTTTTC TGTCAGTTCATTCTAGTGATGCCGAAAACGTTTGGAGATAATATTCAAAT CTTATCGAGTTGTAGAGATTAAATTTATTGTTTACCTGGATGTCTAACCT TCATAAACGTCACATCAAGAAAATCCTCTCTGAGATTTTGGCAGAATTAT AAACTCGTTGCGTTTCTGTCCAGAAGCAGACGAAGTCGCGACGAGTCCGA GCAGCCTTCCGCTGCAAGGCAGACAACACGGACGAGCTCACTTTCGCTGA AGGAGAGGTCATCGTTGTCCTAGCAGAGCCCGACAAGGAGTGGTGGGTGA GTGGACGCAACTTTCTCCTCACTCAGAGCTGTGAAAAAGAATTGTTTCAG ATTAAAGTAAATGCTAGTTGCAAGAGTCAACTAATTCTTATGCACCCTGT CCAATATATCTTTGAAACTCAGATTCGAATCAGCCATGACCCGACAAAGC ACTTCCTTGTTTGCTTTAATGACTACATCTGGCAAAGCAAACTCACCAAT ACGATGAAGGAAGGTGTCAGCTTTTAAAGGCACCAAAACTTAAGGTGGTC TTGTGACTAAAGTGTACATAATTCTTCCAGAATCTAAAGATTTTAGGTTC TGGTTTTGAATCTCTTAGCAGATCCCAATGTGACACATGTATGCCCTTGA GTAAGGCAATTTACTTCTTGCATGTATATTTACCCACTGTTTACAATCTT GTTAGTGTCCTGCTTTGAAAAAGATAGCATAGCCCTGATTACTGTACATA ACCTCCATTAACATTAATCCACTAGGTTACATAGATCCGCCACTTTGAAA AACAGTGGTTATGAGAAATCTCTAGTGCATTTTGACGTATCTTTTCAGGG TGGCGTGATTATGTTTACTTTTAACTTTAAGTTAATAGATGTTATATTTT TTCTGTATGTTTGTGTTCCCAGGAGGGCCACATCGAGGGCCACCCCGAGA GAAGAGGGCTCTTCCCTGTGAGCTTTGTCCACGTGCTGAGTGACTGAACA AAAGAAGTAGCCATGGAAGGTAGCCATAGAAGGTAGCCATAGAAGGTAGC CATAGAAGAGTGAAAGAAAGAATGAAGATCTTTCAAAGGTTTTAGATAGA AATTTGGATGCTATGATGCTGATGCTAAACGTCAAGGGTCTACTACGGAA TGTCTTGGACCAGCCAAGAAGATTGGAACATCTTTCTCCTGGTACAAACT GTATTTGAAGTTGAAAGTGGAGAAAAGGTATCTTCAGGCAATATCTGGGT CAAAGGTAACAGGTCAAAGGTGAAGTGTAGAAACTCTGACATTTTGTTGC AGTCACTGTTGCTCTGTGAGCAGTGGTGTTGCACGGTACAGTGTGTATTT TACTAAAGAAGAAAACATTACACAATGCAAGGTCAAGTTTTTAAGATGTC ATTTTACATTCAAGGCCACACCATTTTGATTTCTAGGTTCCCAAATTTGC AGCTTCAATTTTGTTTGATTTTCATAGTAAAAAAATTGAAAAAGATTTCT ATCATTCAGGATTTGAATTGACTAACTTTTATTTCCAACACACGGAAAAA AAGGTTTTTGGACTGTACAGCACTACTGACATTTTTGCACCAACAGTTGA AGAAAGTCATTGTCTTCCTAGTTCTTACAATTTTTGCATGAAAAGTTATG TTGACTTTGTGGCTCCTGCGATGGCATTTGGGACTATCAAAGGATGCCTG TGTCTTTCTCCTTTTTCTTTTTTTTATGTCGTTCACCTGATCTATTCTTT TTGTGCAAAAATCTGAGGACCAAGAAAAATTAAATTGGTGTGGCCTATAC ATATTCAATATTCCAAGCAAGACAAAGCAATGAAACTTTAAGAAAACAAA CAAGAATCATCCTAGAAATTTTCTACCCTGTTAGGGCAAAGAGTCTGATT GTGTGATGTCAATGGAAGATTTTAGAAATGAAAATTTAAAAAAGAATAAT CAAGTTGTGGTTTAGATGCGCGCTTTGGTCCTTAGATTTATGTATATACA TACTGAAAAGAGCAATCGATTCCAGAAATCTTGCCAAGAATTTGACCTTG ACCTTTGACACGAATCAGGTACATGTAGCTACAGTACTACCTAGGATGTT GCCATAGTGACCAATTTTACAGTATTTCAAAATTAATCATGGAACTACAA ATAATAATGAATTAAAGTATTCTGATTCTCTAAAGCTCAAATGCTCCCAT TGAATCATGAACCAAAAGCTTACGTAACAATGAAGACACAAGAATACATC TTCCCTGGGATTTTGTAAAGAAGATTGGACATTCCATGTACAAATTTTTG GAGAGGTGTTGCTTTTTTTCAAAGAAAGGTGGATAAAGAAAGATTCAGGG CATCTTGAAGATACTTTCTTGCTCCTATTTTGTGCTCATTGAAGAGAAAG AAATCATATCAAAACTATGGGATTTTTTGGAAGATAATACTGATCTATAT GAATGAATTGGGACAACCAAATTAGACATAACTTATGATATTGGTGAAAT AGATACTCATGGCTCGGACCAAGGAGGTTAATTTTAAACCTCCTTGCTTA GACCTATTCACATTTGTAGCTATAGCCTCCAGTCATTGGAGTTTTTAAGA ACAATTATAAAGAAAAGAAGGTTGAACACAAGTATTTGTAGGAATCAAAC ATCTGTCCATGGAAACAAAGTTTATCTTTTAACCAGCTACAGTGGACAAA TTTGTATTTGGAACAAAAGAATTGAAAAGAAAAAGCATTAGCTTTATTAA TCAAAAGAAATGGAGTAATGAAATTTTGCCATCTATCTCTACCCTCCTCA AATTTATACAGTGGAATATTCCAAGGAATTTTAATGTAGGTCTAGTCCAA GTTGTAGCTCGGGAGGGTGATCAGTTGTTGCCAGTTCTAAATGTTTAAGA TGGAAAAGCCAAGTTTGTAAATACTCTAGGTACCTTGGGCCAGTATTTTA CCTGACTTTGATAATATGGTGTTTTTATGGGGTCTGCATTAGTATTAAGT ATTAGTAGATTTGCAGTGAGGAGGCATTTTGTGTAGAAGGTTTTGGGATC ATTCATGGAGAAAGTGGCTACAGTCAAACCTGTACTAGTGACCACATAGA TGCATAAAGACCACCTGGCCATTGCTAAACAGTGCACAGTCAAACCTGTA CTACCGACTAGTGACCACCTCTGTTTGATCGAGGCCCGCCTGGCCATTTT TAAAAGCTAGGCCTCTTTGAATTCCTGAGATTTGATGGCTGTCCCAGTTT GAAAGTCTGCCAAGATATGATTTTTACCAAGTGCTAAAGTTTTCCTCTGG GCAATAATACTAGGATACTATACATGTACAATTTGTTACCTACATGTACA ATGTACATTTTGTATGTGTGTGTTCTACAACTTGCTATTGACAAAAGCTG CTTGCCATAGGCATAAGAACAGATAGAACTGAACATTTCTTGTCCTTTTA CAATTTTTGGTAACTTCCTTCATATGCTGCAGCAGAAGTTATAATCTGCT AAATGCCACTGTTTCTATTTGTATCTTAACGTGCCATAACAAGCTAGAAT AAGTGACAAAAGCTGATGCTTTTTTGTAACCCCGAACTGCTCAAAATGCC TCCTTGTTGCAAATCTTTACAAGACCTCTTTAAAAAGGGACCCCCTTTAC CCAAACAGGGTGTTTGTGAACAATCTTTGTGTAAATGTACATATTTAAAA GGTACTTTCTGTGTCAATGCAAATGAAACTTTTCTATACCTATCTACACC CAAGTAATCTATTAGTACATGTAGTTAAGATACTTGTCATTGGGGTATAT TGCAATGGTGGTAAACTTATAGCTGCTTGTGTGTGCTGTGGAAAGAATAA GTGGTCAGATACATTCACGCAATATCTGAGGAATCGAATTGTAGTGGCAG TAGTGTTTGAGGAGTACAGTAGGTTTATACATGGAAACAGGGGTGCCAAA GTTAATCTTTTGTAGTATGTTTGACTTTCATCGCCAAGAATAAGAACATT TTTTTCAGACTTTCTTAGACAGGTACCCTTAAAGAAAAGTAGGACCATCA GTAAAGCCGTACAAAGATAATTATATGGACCCGGTTAGTGCATATACATT GTTCTAACTTGAAATAGAGGGCCATATTTCCTCAAGCGGTTGTTGATATT GTGTTTATAGATCAGTTGATACCAGAAAAGCAGCATTTTGCCAATCAGGA CCTACATGCATTACACAAACAATAAGTGAGGAAGTACATTGTATACATGT AAGCACAGCTAATATGCATAAGCACTTTTCAGAATCTCTACACTAAAGGA GAAATTAAGTGAAAACATTAATTTTGTTATACAGATTTCTGTATCCCCCA TAGATTTACAACGTTCAAAGTCATGTCTCTATATCTGCATGGTTCCCTAA ATAAGAATGAGAGAATGTCTCTTAGCATTTTAGAAGTTAGTGATGAAACG TTGCTGTAAATACTGTCTGCAAAAAATATTCAGTCCTTTCAGTTGTATAT ACCGTTAAAAAAGTCCAGATTTCTTTGTTTGAGGTAGTCCTTATATTATG TAAAATATTGATGTGTATCATTATGATGAGCATGGTACATGACATAAAGG TGAAACAGTGGGTAACAACAACAAAACTATTTGTAATGCTTGATATATTT CAGGCTATTCCTTTGTATTCCTCCATGAATAGTTTCATCAGGTGGGTAAA TCACTGGATAAAAGGCTTCTTCCCTACAACCAAGAGTTAATATCTAGCCA GTTTCAGTTGACCGTCTGCCACTTACCTCATGGCAAAAATGACTGGTTCC ACTTTGCAACACGAGTCATATTTGGGACTGCATTCTGTACATTGCAGCAG CGCCACCTAGCTGCAGTGCAAAGTAGGACCAGTCTTTAACTCCCTGAGGA AGGTAACAGACTGTCTGTAGAGATGTCAGCAAGGTATTAACTCTAGGTTG TGTTGCAGATACCTTTCACCCTAGAATATTGTATCTCGGTGCAGTTACTG TATCTCTTTATGTTTACCAACAGTTGGCATGTTTTTTTATATGGTTGTTT TATACAGACTGGAAACAAGCAATATGTTACAGACACCTCCAAGAATTTCT GATAGTAGAATGTGGATAGGCTATCCTTTACTTGGGAACTGCACAAATAT GTACCTGAGAATCTTCCAAAATGTGCTAAAATGTCCAATTTTACATCAGC ATGCCAGTACAAAGTTTTTTCGTTGACACTGGAGCACTAGCTAAACTGTA CAGGTTTTACGAAATGACTATTATGAATTTACTTGTTCATTGTTTTAACT GTGCACGTGCAGCAAGATTCATTATGGGTAACATGTCAAAGGTGAAGGCC CCTGTGATATAAACAAAACACATGAAGCATACATGTAGTCTAGATAAGAA CTGTTTACAAGTTATGGGCCTTGACCTTTGACATATTACCCACAATGCAT CTAGTTGCACATGAGCAGTTGGTAGCATAAACAAGCTTATTCGCTCTGTA TACTTTTCCTCCCCATTTGGAGCAGCGTTAAGACAACAGATACAGTCTGA TGTTAACAATTGTGGCATCCTTTGTCCAGACATACTAGATTTATATGTTG ATGAGTATTCTGTGTTGTACAGTATGGCCTTCTTTCAGAATTGCAAAACA TTTTACTTGTATGTTTTGTTGTAATATATATGATTATATACATGTACCTG GACAATAGTAACTGGATAACAGAAACTACATAATGTCGAATCAGTATGTA CCCTTACGCTTTTTATAGTTTTAGAATTACACTGAATTTATTCTATTGTC TATCTGGCTTGTGTATGTATGAAGGAAATGCTATAATGGAAGTTTCCAAC ATGAAATACCTTTTACTTGTGAATATCTGTATGGCAATAAAGAAGGGAAT TCTATAATAAACATTGGTCTTGTATAAATGGTGTGCCTTTTTATTGCTTC TTGTTGAATGAAACACAAATATCCCAGAATAAATATTACATTTTCAGCTT TCTTGTTTTTAGAGTATATTCCTTTTGGTCTCAATTAATTATATTCCCAC CCATCACCTTGC

Coding sequence (CDS) from alignment at Sc0000050:158677..168538-

>BlTCONS00062998 ID=BlTCONS00062998|Name=BlTCONS00062998|organism=Branchiostoma lanceolatum|type=CDS|length=486bp|location=Sequence derived from alignment at Sc0000050:158677..168538- (Branchiostoma lanceolatum)
TTTATGTCCACATTCCTCGGTGAGAAACCCCAGCCCCTACCTCGGAACAA
GGCAGTATTAGACCGAGGGACGCCCCCCACCCCACCTCCCAAACCTCGAT
CGTCTTCCATGCCGACACAGCCACAAGTTGTTCCCATCAAAATCTCCATA
AATGTTCCAAGTCCAGGGGCTTCCCCAGCTGCCCCTCGGAAGTCTGTGGA
CAGCCTGTCCATGAACAGTGCAGAGGGAGATATCGACAGCTCACCTGACA
GGAGCCCCTCTCCTGTACCCTTACCTAGAAAGACACAGCCACAGACGAAG
TCGCGACGAGTCCGAGCAGCCTTCCGCTGCAAGGCAGACAACACGGACGA
GCTCACTTTCGCTGAAGGAGAGGTCATCGTTGTCCTAGCAGAGCCCGACA
AGGAGTGGTGGGAGGGCCACATCGAGGGCCACCCCGAGAGAAGAGGGCTC
TTCCCTGTGAGCTTTGTCCACGTGCTGAGTGACTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00062998BlTCONS00062998-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00062998-exon-Sc0000050-1564993656:168518..168538BlTCONS00062998-exon-Sc0000050-1564993656:168518..168538Branchiostoma lanceolatumexon
BlTCONS00062998-exon-Sc0000050-1564993656:167506..167612BlTCONS00062998-exon-Sc0000050-1564993656:167506..167612Branchiostoma lanceolatumexon
BlTCONS00062998-exon-Sc0000050-1564993656:167013..167063BlTCONS00062998-exon-Sc0000050-1564993656:167013..167063Branchiostoma lanceolatumexon
BlTCONS00062998-exon-Sc0000050-1564993656:166018..166130BlTCONS00062998-exon-Sc0000050-1564993656:166018..166130Branchiostoma lanceolatumexon
BlTCONS00062998-exon-Sc0000050-1564993656:164443..164562BlTCONS00062998-exon-Sc0000050-1564993656:164443..164562Branchiostoma lanceolatumexon
BlTCONS00062998-exon-Sc0000050-1564993656:158677..163816BlTCONS00062998-exon-Sc0000050-1564993656:158677..163816Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000050genomeSc0000050:158677..168538 -
Properties
Property NameValue
GeneIDBlCUFF030909