|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at Sc0000050:88973..94838+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >BlTCONS00062628 ID=BlTCONS00062628|Name=BlTCONS00062628|organism=Branchiostoma lanceolatum|type=mRNA|length=5866bp|location=Sequence derived from alignment at Sc0000050:88973..94838+ (Branchiostoma lanceolatum)
CAAGAAGCAGGGCTTCATGGCTTCTCTCAAGAAAAACCTGGATATTGGAC
AGAAGGTGAGGAAATATGAGCGATTTCTTGTCAAGACAGTATATGTGCAT
GCAGTTATCATTTTTAGATTTCTAAGTTTTAAGGGTTCCATAAAAAGAAA
TTAGAATGGAAGAACTTTGTGTATAATTACATGTTTAAGACGACACTCTT
CATTACAGTTCCTTGTGATGTTCAACAATAGGGTAACAAAAAAAGTTACA
TCTTTGCATGAAGTTAGGATTACCATGCCTTCTTTAAACTCTTTTGATTA
TCTTAATATTTAGATAAATAAACTATTAGATACATGTGAAAGAAGTAACC
TAAAATTTATCAGCAACATTGTTATAAGTTCGAAGATTATGTTACTAGCG
AGTAACAGGAAATATAATATTTTCTTTTACCTTTACTACACAGGACATGG
TGACGGCTTGTGGCATCACATACGAAGTTGTGTCCAATATACCAAAGGTA
CATTACGACTTTTACTTCAAATCTGACTGTGTCATAGATATTCATAGACC
TAAGCATTGGTCACCATCCATAAGATTATTCTTTTAGTTTAGTTTAGATA
TAGGAACAACTGCAGCAGCAAAACACAATGGACTGCTACTACTACTACAG
GAAAGAAATGAATGTACCATCAGAAATTTGTGTTTTAAACATAACTGTGA
TTGTCTTCCGGTACATGTATTTGCAAACATTCAGGATGGTTCTGCTCTAT
CCACAGGCATCTGAAGAAATTGAGGACCGAGAGACCCTAGCCATGATGGC
AGTGTCAGGAGTGGACAATGAGACAACCGAGGGAGAATCCTACATCGAGA
AGTACACCAAGGGGGTGTCAGCTGTGGAGAGCATCTTAGCGCTGGACAGG
CTTCGTCAGGTGGAGCATCATTCTTGTTTTAGTCTTCTTCATGTTGTGAA
TTATACTGTAAATCTTGAAATTGTCACACTGACATTATGTTTACGGATTA
ATTCACAGTGACCTCTTCATCGCAAACTTTAAAGCATAGTGAAAATTCAA
TTTTCTCCCTACCGCAAATTAAATCATGATGCCAATCTTATCAACATGAA
CAGTTTTTACTTGACTTGTGCAAAGTTTAAGCTCTAGAAACTAGAGGAGT
TGGAAAATGAAGGATTTCGGAAAGATGTTTTTATTATTATAATTTGTATG
GATTTATATTTTTTAATTGTTATATCTACTCAGATTGCAAAATGATCATT
GGATCTGATTGCTGTACATGTAGAGATATATTAATGTGTGTCTATTTATA
TTTATTATATCCAGTGAAAACAATTATTGAAATCCTGGCTAGGACAGTTG
CTCTTTCCATGGTGCTGGCGAGGACAGTTGCTCTTTCCATATGGTGCTGG
CGAGGACAGTTGCTCTTTCCATGGTGCTGAATTGAAAGATGTTCTTAGCT
TATCCTTTCCTCTCAGTTCCTCTGTCTAACAATCTACCATATGTTATCTC
ATGGAATTGATCAACCATGTTATCACACATTAACTGATGTTTCGTAATTT
ATCATGAATTTATTTTTCTCTGTTCAGGAAGTGGCAGTGAAGGAGACTCT
GGCTGCAATTGGGCGTCCTCTGAGGAAGGTGGCCAGTGTGCCCAACATAC
AGCAGGTCTGTTTATGCTAATGTTATGTACTCTTTTTGCTGCCATGAAAC
TCTAAATTTCATCACTAGTTCAAGAATTTGAGAGATCAGTTTTATTCTAG
ACTTCAGACTCCTTGTCATACTTTTTTGCATATTTGACCCATCTTTGAAA
TCTAATTTTTAAAAAGGAAGTACCTCGATGTATGAGTTACCCTCACAAAG
AGAACTGACATGGAATTGTGTACAATGTTTCTTGTGTTGGATCAAACTAT
CCTAAAAAAGAATATAAATATTATATCACAAGTACTGGATTGCAAAGAAA
TGGTATCTTGTTACCCATTTGTGCTAGAACTTGTTTTTGCAGCAGTTTCA
CCAAATTAGAAGAAACACAAGAAACCAAATAACTGTTCTATTTCCAGGTC
AGCCCACAAGGGAGTCGAAAAAAACCACGTCCACGCTCAGAAGTCTTTTC
CCTCAACATGTCTTACCCAAATCCTGACGTGTTTAGACTTCAGATGGAGC
AATCTTTTCACCTTTTATAAACAATGATTCCAGGGGCTAACTCTGGTCAA
TATGCATTGTCACATAAATGCACACTTTTCCTGAATCCATTCAAATATTA
TCTAAAAGTAAATTCAAAGTCTTTCAATTCTTCACGAAATTCTGCATTTG
TAACAATTATTTATTTATTGGTCTGGCTGTGAAAGACACACAGCCAGGGC
TGCCCAACTAGCCTGTGGTTATTACAAATGGCTAGCCTTGCTGACAGTAC
AATGCTTCATGTGGAACTGAGGTTTGAACATAAAACAATAAATGAATATG
AATATAGCATCATAATGCTGCTCACTTTGACTAGAGTTAGCCCAAAAGAA
ACATATCATTCTTTAATTCCTAATATGATGTATTTGAAGCTTATCATAGA
ATACAATTCCTGAAATCTCAGTACATTATTTTAGTAGAAGTTTTATTTAC
CACTGCAAACAACAATACCAACAAAACAATTCCAATATAATGCAAATAAT
ACTACCTGGCAAGAAATGAAAACACAAAGGACATAATGATTAGTGTCCAT
AAATTCCAAATTAAAACCTGATTACTAATTAACAAATGAGAGAAAGAAGA
AACACGCCACTCGCAAGTGCAACAGTAGCAGTGAATAAGATCTCTAAGGT
ACAATGGATTTAGATACTGCCAGACAAGCTATCGGCACAGTGCTTAAGCT
GCTTCAGTCTTGCTGGCGTGTGTGCTGCTCCCTTCATAATCATAGCTGCT
TTTGTCTTTGTTCAAAACAGGCTGCTTTGGTCTTGCAAGCAGGCATTTTT
TTTTTTTACAGCTTGAACAATTTGTCTGAAAAGGCAATCTACACTGCCTG
AAGCAGGATTCAAAAATCGTTTCAATTTCAAACTCAAGAAAAAGTTGGGC
TCATCCAAATTTTTGACTGACGAGCGCCAGTCTTTGTCAAGGAATGAGCA
ATCCACCACCTCCCATTCGTTGACAAAGACAGGCACTGTACAGTCATATT
TTTTTAAATGAGTGAAATCCTGGGTAGATTTTGGAATAAATTGCCATTCT
AGATAATGGAACATCAACAAATTTAGACCACTTATGAAAGGTAATGGATG
TTATTTGAAACGTCTGACCGTTTCCAAAATTTATCCGGCTATCCGAAATA
TCTGACCGTTTCCAAAATTTGTCCAGTTGCTTGAGTAACTGTTACCTTGC
ATATCTTTTTACTTGGATGTCTAACCCTCATTGAAGAGTGAAATCCTACT
TTAGAATGAACTCTACCAACACTGACAAACTTTCAAGCTGTGTGTACTGC
CTGTATAGGGACAGGAGGGCTCTGCTGAAGCGTCTGCCGGCTCTTCTGTG
AGGAGGCACAGCGTGCCCTCTTCACCCAACCCTGCTACAGCCACTGATAG
TCCTAAATTTGCTTTCACCAAACATGTTTGTATAGCTAGCTTTTTGTGCT
ATAACTGGCTCAACCTGATTGTGATCTACAACAATTCTGAACAATGGCTC
ATTGATAAAATCATTTTAGAACTACGTCTATTAGACTCTTTGGCTAATAT
GATTTTTTTTTCAAATCAAAAGTGTGAATTCTCAAATATGTATGTTGTAA
TTTTTTCCTTACAACAAATGAATTTACAATCATGCAAGAACAAAATCCTT
TAAGTCATCTTTGCTCAGACATTGCAAAATGATCCTAAATGTTCCTTAAA
AATGTGTGTATAGCTGGCTTTTGCTTGCACTAGTTATCAGTGATTCACCA
CAACCATTTGAACTGAAAACTTGGTTAAATTGGTCTTGAAATATGTACAC
CATACAAACTACTATCTTCTAAAAATCAGCTGTATTAAAACCCAAACAGA
AAGTAATGAATGAAAAATATCCACAATTCCTTCAAATCATTTTTGCCTCA
AAATTGAATCAAATTTGAAATCAGAAAATGAAAAGTTCCAGGACTGAATA
ATGTTACTTTGTACATCAGTTTTTCTTCAACTACCTAATTCAAAATCTGA
CAAACATAAATTATGTGTTACATTATGAAAACTAATTTGTAGTATTTGAT
TAATAATAATAATGCAGACGATAAAAGTCACAAGCATCAAATTGAAGAGA
GATACAATGTTTGATGTGTTTTTTTACAAAATCTTAAAGCTTCTCTACTT
AATTCTGTAATTATAGTTCTTCAGATTGGTATGCAATATACATGTATGAT
GCCCAGTGTTATATCTTGTTGAATTGTATCACTGTGTTTTTAACGTGACT
GAAGTTTTGATCTATTTTCTAGGCCATGTCTCGCCTGGAGTCCCCCGGGA
GCAGGGATGAGGAATATGGATCGGTAAGCTCTTAAACCTGTTCTCTACAT
CATGTGTATGGATACTGTCTTCAGGAAGTTCTTATCACATATGTTTTATA
GCTCTTTTTGTGGATAATCTCTTTGTGTACTTGTTTTTCAAATGTAAAAT
CAACATATTTGAACTATAAACTATGTTTACTTGACTCCAGTCCTGTGCAA
CATGTCTTCTTCTAAAAGTGATGATGGGGAAATTTTATAGATTGATAATT
CTGAGTTCACTGTACAGTTGTCATAATGCACTCTCTGCTTCTAAAAGTGT
TGTTGAGGAAAAAGTTTTTTTTTAGACAGATGGCTTAGGGTCAGAGTCCA
ATGTACAACTGCTGCAATGCACTGTCTGCCATGCCTCTTATTTTTGCTTC
TCTCTCGTTGCTCCCCTCTAGGCATGTGCTTCAGGCCACTACCCCATCCC
TATCCTCCCATCTTGCTATTATATTGTCTGTTATTGACATTCCCCTGCGC
CTATGCATTGTGCTATCCCAGCCCCCACCCTTTTCAAGTTATTTTGCCAG
TTAATTGCGTCTGTTGCCGTGTTATTTTTTTCGAGGCAACTTCAGTTTTT
AGGCACTGTTTTATGGTTTTTGGTATATTTAATAATATGTTACTGCTTTC
TTTGCTGCACTCCCTGCATATTAAAAAGCATTAGGAAAGATGACGAAACA
TACATACATGTATGCCCTCATCTACCAATGGTCACTTAGCAAGAAGCATT
TTATTCCTACTTAGTACTTGAATGTATGATAAGTCCACAAATGTTGTAAA
GAGCTACCAGTTGACTCAGTTGAATACCGTATTATTTTGTATAGATGTGT
TTTTTTTAGATTTAGAGATTTTACCATTCACAAGAACAGTAGCGGAAAGT
TTTCTGTTAAGTTTTACTGCAGCTGCCACATTTTATGTAATTTGCCTTTT
TTTCCTTTTTTTCCTTTTTTTTTGTGGTATATAAAGAACAAAAAATATAC
GACGTGCAGATAAATTATGATAAGTGTGTAAAGTGGGGAACCACTGCAGC
ATGTTGTTCAACCATGTGTTGAGTGTCCTTCTTATTGTAACTCATATCTA
CTAGTTAGCACTTATTTGCTTTCTTTCCTTTGTCTTTCAGCATCTGAGAT
TGGTATGAAGATGTTTTAAGTTTGTTCATGTACCCCTTCTCACTGGTCTA
AGTATTTCTTTAGTTTTATCTATACCTATTAGTAGAAAATCCCCACCCCT
CCCAAACACCCATCTTCTAACCCCCCAACCCCTCTTCTAACAACTTTTCT
GGGTGGTAAGTGCACCAGAGGCTTTTTTGCATGGTCTTATAATGTACAAT
ACCACTGTGGTCGCACTTGCACGTTAATGCATGTCATTCACAATTTTATT
GCACAGCGTATGGGCC Coding sequence (CDS) from alignment at Sc0000050:88973..94838+ >BlTCONS00062628 ID=BlTCONS00062628|Name=BlTCONS00062628|organism=Branchiostoma lanceolatum|type=CDS|length=408bp|location=Sequence derived from alignment at Sc0000050:88973..94838+ (Branchiostoma lanceolatum)
AAGAAGCAGGGCTTCATGGCTTCTCTCAAGAAAAACCTGGATATTGGACA
GAAGGACATGGTGACGGCTTGTGGCATCACATACGAAGTTGTGTCCAATA
TACCAAAGGCATCTGAAGAAATTGAGGACCGAGAGACCCTAGCCATGATG
GCAGTGTCAGGAGTGGACAATGAGACAACCGAGGGAGAATCCTACATCGA
GAAGTACACCAAGGGGGTGTCAGCTGTGGAGAGCATCTTAGCGCTGGACA
GGCTTCGTCAGGAAGTGGCAGTGAAGGAGACTCTGGCTGCAATTGGGCGT
CCTCTGAGGAAGGTGGCCAGTGTGCCCAACATACAGCAGGCCATGTCTCG
CCTGGAGTCCCCCGGGAGCAGGGATGAGGAATATGGATCGCATCTGAGAT
TGGTATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| BlTCONS00062628-exon-Sc0000050-1564993656:88973..89027 | BlTCONS00062628-exon-Sc0000050-1564993656:88973..89027 | Branchiostoma lanceolatum | exon |
| BlTCONS00062628-exon-Sc0000050-1564993656:89416..89469 | BlTCONS00062628-exon-Sc0000050-1564993656:89416..89469 | Branchiostoma lanceolatum | exon |
| BlTCONS00062628-exon-Sc0000050-1564993656:89729..89881 | BlTCONS00062628-exon-Sc0000050-1564993656:89729..89881 | Branchiostoma lanceolatum | exon |
| BlTCONS00062628-exon-Sc0000050-1564993656:90550..90627 | BlTCONS00062628-exon-Sc0000050-1564993656:90550..90627 | Branchiostoma lanceolatum | exon |
| BlTCONS00062628-exon-Sc0000050-1564993656:93395..93445 | BlTCONS00062628-exon-Sc0000050-1564993656:93395..93445 | Branchiostoma lanceolatum | exon |
| BlTCONS00062628-exon-Sc0000050-1564993656:94563..94838 | BlTCONS00062628-exon-Sc0000050-1564993656:94563..94838 | Branchiostoma lanceolatum | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000050 | genome | Sc0000050:88973..94838 + |
Properties
| Property Name | Value |
|---|
| GeneID | BlCUFF030776 |
|
