BlTCONS00062349 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00062349
Unique NameBlTCONS00062349
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000049:631334..634302-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00062349 ID=BlTCONS00062349|Name=BlTCONS00062349|organism=Branchiostoma lanceolatum|type=mRNA|length=2969bp|location=Sequence derived from alignment at Sc0000049:631334..634302- (Branchiostoma lanceolatum)
GTGCCATATCATGCACATAATCTAAGGCAGTATTCGCTATTGAGTCACTT
ACAAAGACTGACCCCTGACCTTCAGTCAGTGGCATTTGTAATCATAGTAA
CCACGACAGCGCAGGTATTCACTGAGCCAGAGCGGTCCCCGGAGAGCATA
ATATATACTCAAGACTACCAACGTGTTATCCTTTAGAATATTTAAGCCTC
CACGTTTTAGAGTTTTGACCAAGAGATACTCTGAAGGACAACTGAAACAA
AGGTACCTTATAGTTTTGTCTTGTGGGGATTGAAGGATTAATCAGGTGCG
TTAGTGTTAGTTGCTACGGTAAACAGAGTACTGCTGTGTGCGTAATTTGT
ACAACTTGCAAGACCGGTTTTCTCTGTCGCGTTATCACCACCATTTTGTT
TGTCAGAGAAACAACGAGAAATGAATTAAATTGCTATCAATGACATTCAG
ATTTTGTCACTTTGGCAAGAAAAGAATAACATGGCCCCGATGATGGTCTG
ATATTATTACTCGTTATAATTGTTAGCTAAATGTATGCAGTCACAAGGTT
TAGGAGAGGTCTGCCCGGTAGAATACATCGTTGGATGATTTGTAGTTTTC
TTTAGTAAACTTAAGTCTAAGTCAGAGCAATCAGGATTATTCAAGCTCCT
CGGTCAGAGCTGTACAACATTTTGCTATTTCTATTTTAACATCCTTCAGA
GCAAGCATGGAATGTAAACTCTCATTACCCGACTTTCAAAGATGACAAAT
CCATTCTTCAGGGGGAGGGGCACGGGGGAGGGGTCAGAAAATTATTGATG
AGACAAGTGGTAGCATCATTAGAAATTTGCATGATTACTGCAAGCACGAA
TTTTGCATCAGGACAGTAGTAATTTGTTTATATACCCTTCGAATTCCCTT
TACCTACATAGACATGGCTGACCAACTGACAGAGGAGCAGATCGCTGAGT
TCAAGGAAGCCTTCTCCTTGTTCGACAAAGATGGGGACGGTACCATCACC
ACAAGGGAGCTGGGAACTGTCATGAGGTCGCTGGGTCAGAACCCAACCGA
AGCTGAACTTCAGGTACGTTATTTAAAAGCTACACCTTAAATTTGCAGAC
CTAGAAAACGGTGTACCCAACATACAAATACAGACTATTAGAAAATCTTG
AAGTTGCAATAAAATCTGTCTGCTGTAATGTACATGTATTATGAAACTGT
GGGTTTTATATCAACCGAGACAACTATCCCAACATGCACTTTTGCAGGAT
ATGATAAACGAGGTAGACGCGGACGGAAACGGAACCATAGACTTCCCAGA
GTTCCTCACCATGATGGCCCGGAAGATGAAGGACACCGACTCGGAAGAAG
AGATTCGTGAAGCATTTCGGGTGTTCGATAAGGTACTGGTGTTGTTTTGA
AAGCTATCTGAGCCTGAATAAATCTCAAACCAACACATTAGAGGTCGCGC
TTGCGAACTCATGTTTTTGTAGTTCTTTCTTTAGGATGCAATATTCAACA
TATGATGCACAAATAAGATATACCTTTTCCAGGGCTGTAAATCTAAGTCC
TGACATGCCAGATTCCTTCCGTTACGTTCAAAGTGGCCATTATACTTAAT
AAAGGGATTAAAGTTTTGATTAAAAGCTGACAAATGATAGCTCTTTCAAT
TGCAATTCTATTGTTTTAACACGTCTCACACTAGCAGATAGCATTCCAGT
CATTTATCTCTTTTAACTCAGTCTGAAATGTTCCGTTTTTTCTCTGACAC
AGCCGATGATGTAGTACTCTACTATCATAATTCCGCCAAGCAGGGTATAC
ATAATTCCACCACCCTGAAAATATACGTCCAAATAGATCTCCAAACCAAC
ATCCCCAAGTATAATGCACTCCTTTATATCAAAACTTTGCATACCTCGGG
GTTGCTGCACTAGAGAGACTCTCAAGACCACTGTTTTTCACAAGTGGCGG
ATTTATGTTACCCAGAGGGTTAATATTAATACAGGTTAACATTCTCAAAT
TGTCTAACACTTTCCCTGCCAAAATTATACAGGATGGCAACGGCTTCATC
AGCGCTGCGGAGCTGCGTCACGTGATGACCAACCTGGGAGAGAAGCTGAC
AGATGAAGAGGTGGATGAGATGGTCCGAGAGGCTGACATCGACGGAGATG
GCCAGGTTAGATCCCTGCAGCACTCTCTGCTTTCTGTCACTTCCCGGAGT
GATTTTATACAGTACTATACAGAACACCAAGAAAGTGCGGCAAATATATT
AACAATACGATCATCCTTAACTATCACGCAACTAACGTTAGATGTGGTAA
AATATTTGAAATTAGGGACTCAGGAATGGCAGAAAGTCATTGTTTGTCTT
TTCTTAGTGTTTATGATATACTGTTGCATACGGAGAATAGGAATCATAAA
GGTTTCGGTGAACCTGTATCTTTTTATAGATGTGTGTCTGAGGAAAGGAA
AAATTACCGATGTTGTCTGTTTGTTACCTGTGCAGGTCAACTACGAAGAG
TTCGTGGAGATGATGACTTCAAAATAAAGCAGCCGACCTGATCACCAGCT
CTTCCGTATCTTAGAATTAGTGTGGTGAATGCAAAGTAGGCATCGAGACA
ACGACAAGATCACAGCCATTGGTTCTGCCAGTTGTGCCGCCATCTTGTTC
TCAGAATTCAACACCGGTGCAGGATGTTGACGATGTTGTTGTACTGGTAA
CCGGTATACACAATGTATAACGTTATGTGTACCACAACGTATATTGCTTT
TCTAGCGTAGTAACCTCGTCTGTAACTTCTTCACCTCAGTATCGGTATTA
TCTTTAGCTTGAATGGTTAACAACGTTAACGTATCTTATTCAATTTTCCT
CTGATCAAAATTCAGATACTGTTCGTATGTTTAACGTTTTTGCACCGTGA
TATGCTTTAGATTTGAATGTTACGTTTCAATGTATGAATAAAAGGTCTCA
TCATAGAGAATAGAAAATG

Coding sequence (CDS) from alignment at Sc0000049:631334..634302-

>BlTCONS00062349 ID=BlTCONS00062349|Name=BlTCONS00062349|organism=Branchiostoma lanceolatum|type=CDS|length=573bp|location=Sequence derived from alignment at Sc0000049:631334..634302- (Branchiostoma lanceolatum)
ATGTTACCCAGAGGGTTAATATTAATACAGGTTAACATTCTCAAATTGTC
TAACACTTTCCCTGCCAAAATTATACAGGATGGCAACGGCTTCATCAGCG
CTGCGGAGCTGCGTCACGTGATGACCAACCTGGGAGAGAAGCTGACAGAT
GAAGAGGTGGATGAGATGGTCCGAGAGGCTGACATCGACGGAGATGGCCA
GGTTAGATCCCTGCAGCACTCTCTGCTTTCTGTCACTTCCCGGAGTGATT
TTATACAGTACTATACAGAACACCAAGAAAGTGCGGCAAATATATTAACA
ATACGATCATCCTTAACTATCACGCAACTAACGTTAGATGTGGTAAAATA
TTTGAAATTAGGGACTCAGGAATGGCAGAAAGTCATTGTTTGTCTTTTCT
TAGTGTTTATGATATACTGTTGCATACGGAGAATAGGAATCATAAAGGTT
TCGGTGAACCTGTATCTTTTTATAGATGTGTGTCTGAGGAAAGGAAAAAT
TACCGATGTTGTCTGTTTGTTACCTGTGCAGGTCAACTACGAAGAGTTCG
TGGAGATGATGACTTCAAAATAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00062349-exon-Sc0000049-1564993656:634051..634302BlTCONS00062349-exon-Sc0000049-1564993656:634051..634302Branchiostoma lanceolatumexon
BlTCONS00062349-exon-Sc0000049-1564993656:633240..633391BlTCONS00062349-exon-Sc0000049-1564993656:633240..633391Branchiostoma lanceolatumexon
BlTCONS00062349-exon-Sc0000049-1564993656:631334..633055BlTCONS00062349-exon-Sc0000049-1564993656:631334..633055Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00062349BlTCONS00062349-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000049genomeSc0000049:631334..634302 -
Properties
Property NameValue
GeneIDBlCUFF030680