BlTCONS00062283 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00062283
Unique NameBlTCONS00062283
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000049:334260..342619-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00062283 ID=BlTCONS00062283|Name=BlTCONS00062283|organism=Branchiostoma lanceolatum|type=mRNA|length=8360bp|location=Sequence derived from alignment at Sc0000049:334260..342619- (Branchiostoma lanceolatum)
CCCAGGCTTGGAGGGACCTCCTTGGAAAGCTGTCTGAGTTAGGATGGCTC
CACAACAAAATTCGCAAGTTTGTGGACAGTAAGATCTCTGACAGGGCCCT
GGGTCTGGTGGGACAGAGCTTCTGTGCCGCTCTGCAACATGAACTGACAG
AGTACTACAGACTAGTGGCCGTTCTAGATGCACAGGTGAGGACTGCATGT
TATTTTTGGCAACACCTCAGTGGTAGAGCTGTAATTAGCAATTGCTTTCA
TCCACACAAACGTTGACTTAGACCAGACAACTTTTTGATTTGATGAATAT
CATCCTCTGCAGACAGCAAATCTTATGATAAGAGTTTAAAGACAAACTCA
TTTTGCAATAGGATACTTTCAACAAGGATGACATACTATGCATTCATTGA
TTTTTGTTGGAATTCGATTACACGGTGAGGGAGTAGAAAAGAGGTTTTTG
CATTGTTTGAAGTTGGTGGTCGAAACAGTACTGTAGCAAAAAAGAGATAT
TTTCGGCATTATAATTTCAGGCACTGCAAAAACGTGAACAAAAACCACAG
CAAGTGTATGAAGATTTGCAGTACAATCTTGCCAAAGTTTTAATTTAAGG
ACTCTCACATGGTAAGGAAAGGAAGGATTTCCAGCCACAACAACAGAAAA
ATTTCAGATGTTCAACACTTTTTCAGGTCCAACAAGACCAGGACCTGGGC
GTGAGTGTTGGCAGCGGAGGAGGGCTGACCCTGCGTAGGCTGGTCGTGTG
GTCCTACGAACCTCTGCAGAGACTCAAAACTCTGGCCTGCCTCGTCGACT
CATGCAAAGGTAATTCATTACCTCTGTAAAAAAGGAGGTATTGCTTTTTG
GTCTGTTTGGTGTGTTTGTCTGGGTGTGTGTCCATAGTTTGTTCCCATTG
GTCTGGTTCCGAGTTTGTTCTCAGCAGAGTTGAAACCGGCGACTCACATT
CTGCCCCTCTGCAATATTCAACAGGTTTTTAATTATATGCCCTGTGATCT
TTATACACTGTGCTCTACTGTGAGGTCAGAGATCACCGACATGGCTGCCC
CAAAATTGTAGTATACCAATGATATTAGAATTTAAATACATGCTAAAGAG
AGTTTATTTGCACGTAGGTAAGAAAGGAGGTGCACTGGCGTCTGTGGTCC
ACTCCTACATGCAGACGGGGGATCCGTCGCTGCGCTCGCTGGTGAAACAC
ACGCTGAACGTGGTGTCCCAGCCCATCTGGGAAATCATGGAACAGTGGAT
CTATGAGGGGGACCTGGAAGACAACTATCAAGAGGTTTGTTTGTTTTTCA
TAGTACAGAGCTTTAATTCTTTGAGTTGTTAAATATATATCTTTTCTGCA
ATGTCAAAATTTTTTCAGCAATTTCAAAAAGTTTTCGGAAAACTCAAAAA
ATTTTGGTTGGGTTGCTTAGGGTGGGGTTTTTGAGTCTAGAAAAAAAGCT
AACTACAGAAAAATGAACTTTAAATACTGCCATTTTCAATTTCATTCAAC
CATTCATTACTTCTTTCATCCTACACCCTAGACATACTCTCAAAGCAAAT
TTGTAGGGTTCATTAACTTAAAACCAGCCCTAATGCTATAAAAACCTATG
ATAAATCAATGTGGACAATCAACTGACTTGACTGTTTGTTTTTCTGTTTG
TTTTTCTGTTTATTTGTTTGTAGTATTTTGTTGCATCGGACCCGACTGTG
AAAGAGGACCGACTGTGGCATGACAAGTATTCCCTGCGCAAGTCTATGAT
CCCAGCTTTTATCACAAGAGAACAGGCCGACAAGGTAAGGATACAATGGA
CCTTTGGGATATGCCAACATCATCAAATATTAGCAAACTGAATAAACTTT
TGAGCTCTGTACTCTCCTACCGCTTTTCATTTTGTATGTTCAGAGTAATT
TGGGGGGAAATTCTCAGCAATAAAAATGTCACTTAACTTTCAATTGAGAA
GCATTTCTATGTGACATGTTTTCTTTCCTATTTTACCTAGTCATGTTCAT
TTTTTCTTGTGCCCCATAGATCTTGTTGATAGGGAAGACGATCAACTTCA
TCCGCCAGGTGTGCCGGGACAGGTCCCCCTTAAAGACCAAGGCAGTGGTG
AAGACTGGGGAGGCTGAGGAAGAAGGTAACTTACCGAAGATCAGGAAATA
GTCGCAGTGGATTTATACGTATTCGCAGTTATGCATGATGTTACTGTAGT
TGTTTCTACTGCAAATTTGAAACACAGTGAAATCCTCCTTTTCCATATGC
CATGAAATTAAATCCCTACAATCTTAGAAGGATTTACAGCAACTTACTTA
TGACCAACATACCTGCAGTTCCCACATTGACTGTTAGGTGGTGCTCATAA
TCCTGCTCAAGAAATCAAATGCCTTATTCTACAATAACATGTATGACTCC
ATAGGTCTGTTTCATGGCATAGACGTTTATTAGCTAAGTATGCAATGTGT
CTGCCAATGCCAGTGGAAGAATAGCTAGAATTTTGCTTGTGTATTGTCCA
ATCTTTTACTAGGTGACCTGTTCACGAGGGATGTAGACGGTAGTCTGCAG
CAGGTGATTGACACAGCCTACCGAGAGACCAGCCGGATCCTACTGGACAT
CCTGCACACCAAGTACAAGTTCATGGACCATCTCAAGGTGAACAAATAAC
GCCATCTTTTATATTTTAATCATCATTACGTTGGTAAAAATGGAGGTTAT
TTAATTTTGGTCTGTTTGCCCATCTGTCTGTTTAGATATTTGTGGCATGA
ATTAGGAAGCTCTGGATGGATCATTGTGAGTATTTTTGGTATGTAGGCAG
GTCTTGGGAAGATCGCAGAACATCATTCTGTTTTTGTATCTTTTGTCCTG
GTTTAAATCTTGTAGTTCTTTCACTATTGCACTGCTGAGGGATCTGTCTG
TTGAAACTAGCTTAGTGTTCTCCATTGACTCTAGTTGATTTCTGTTCCTT
AGGCCATGAGACGGTACCTACTACTGGGACAGGGGGATTTCATCAGACAT
CTTATGGACCTGCTGGAGTAAGTTTGAGTAACCTACATTTCTTGCAATGC
TATAGACAAACTAGAAAAGATCAGTCACTGACAATAGGTAGTGGATGCTA
ACTGAAACGTCTGACTTTCCAAAACCTATCCAGCTGCTTGAGTAACTGTT
ACCTTATGTATCTTTTTACCGGGAGATCTAACCTTCATCGACGCAGAAAA
AAATGTGGTAAATTTGTGTGAGAACAAAAAAGAAACTGCTAAGAGAACTG
CATCAGGATTATTTAAAAAAATGAACGGTTTGCCTGAAAAAGTCGATGAA
AATACTGTAGGACCGAAGAAAAATAAAGGACAATGAACTCAGAATGGGGA
AAAATATCAAAGACTTTCACAGCCATATATTTGAATATCTGACCTTTAAA
TCAGACCAACTATCAGAACAACTCAGATCACTGAACACTTCTTTGTTGCA
CCCCTCCCACTAGTCCACATCTGAACAAGCCAGCCAATATATACCCTGTA
CCTGCATCAGCTGACTAGTATCCTAAAGAGTATGCCATGCCAAAAAGCAG
CTATCCTGACATACAAAACACATATATACACACTGATCAGTTGTTTTACT
CTCCTCCACAGACCAGACCTTAACAAACCTGCCAGTACCCTGTACCTGCA
CAACCTGACTGGTATCCTGGAGACTGCCATCAGGGCCACTAATGCACAGT
TTGATGACCCTGACATCCTCAAGAGAATAGATGTACGACTACTGGAGGTA
AGCAGCTGTCTGTTGTTCTTTTACTCAATGACAGTAGAACACTAAGCTTT
AGTCTGTGAAACAATTGAAAAGTATGGCGTTCTTCACCTCATCTTGGGAT
ATTTTAATAGCCTGATATCCATCCTATTCTAGCTTCGTTGGCTCCTCTGA
TTACTTCTATACAGAATAGTGGAAACGTCCTGCAACTGCATTCAGTCTTT
CTTCATCGTCTTCCACTTTGCCTTGCAAGCTCCCTTCCACTGCTTAAGCA
AAATGTTTGATCCCCAAATAACGCAGGACGTAAGAGCCTAACACTCAACG
GGGGACAGGCTATTTTGCAGGTAAGCGGTCGTTGGAGCAAACCGGAGCTA
GAATAGGATGCCAGGCTTACTCGGCCAATCATTGCCTGTCTTTGCCTGTA
GGTTTCCCCAGGAGACTGTGGCTGGGATGTGTTCAGTCTGGATTATCACG
TGGACGGCCCCATCAGTACGGTTTTCACGCCGGAGACCAAGATCCAATAC
CTGCGGGTCTTCAACTTCCTGTGGCGTGCCAAACGGATGGAGTACACACT
GACGGAGATCTGGAAGGACCAGATGACCATAAACAAGCTGCTGCTTAAGA
TTGTGCCAGGTGAGACTCTTTGTCTTATTTGTACTGCATTTCTATTGACT
GAACAAAAGAAGTGGTTTGAAATCTGACTTTGTTTAAACAGAAGTAATAT
TTTGAAACATGCATTTTTTTAGAACAGCAACTTCTAACAATTTTGGATGG
TGCCTGTTTCATTTTTGATTTTCTCATTTTACTGGGAGTGTACAAAGTAG
AGCATGTTTTATTTGTACTGAAANTACAAAGTAGAACATGTTTTATTTGT
ACTGAAAACAATTAAGAGAATTATATAATTAATTAGGACATTGTTCATCC
CTCCTTCAGAGTTGGCCTCCTTACTCCACCGCTGCCACACCCTCTCCTCA
GAGATGGTTCACTTCATCAACCAGATGCAATACTACATCACTTTTGAGGT
ACGTCTGACTTTTTAAAACTATCTTTCATTGTCATTTTACCAAAAGAATT
AAGTCTTTGTATTATGTAGTTGTAGCTACCTCAAATATATGTGAATGCAC
TATATGTTTAGATCTAACTTTCAAGGGGAAATTAACTTCCTAATGTACAG
TGTCCCTCAGAATGACTGACCCTCTTTTTTTGGTCACATGATCTTGTGAA
CAGATGGCTACAAAACTGGATCAGACTCAGAGTTGTTTGGACATTTGCAC
AGCATGTTTGTTTTGATTCTCGTTACTGATGCCTACTGTAGGTTCTGGAG
TGTTCGTGGGATGAGCTGTGGAAGAAAGTGAAGGAGTCTCCCGACCTTGA
TCATGTGATCGCCTCTCATCAAGTGTTCCTGGACGCCATCATACAACACT
GCTTACTGGATGATGAATCGAGGGTAGGTAACTCTTCCTTGGTTTGGTAA
GTTACTGTATTTATGTTTTAGGATCAGTGATGAGGAGTAACTATATATAG
GTATATGTGTTGTATTTTGACAGTTACTTGAAGCCCCACTACCATCACAC
TCACTTAAGTTGGTGCTGGGTTGGGAGTAGCCTGGAATCCATACCTATTA
TAGCTCTCCTTTGATAGCATCCAAAAAAATATGACTCTCCTGACTTTGAT
GTTTCAAAATGCATTGTCGGCTAGCGCAGTTGACTTTTAAAGACAAGTAG
GCAACCAACCTTCAACCACAAATGGCCTGGCTCACGACTAACTTCCAAAC
ATTGTCTGAAGAAGGTCAGAAGGCCATGGTTGGTTCTGTATGACAAGGGC
TTTATGTTTGTTGAATATTTCAACCAGGATTTGCTCTGGCAAACAGCTAA
GAAGTATTTTTGGTGTTTTTGGTGTTGCAAATATTCCAACAAGTTTTTAA
TTGCAGGCTGTACTAGGATTTTTGTCAACTCATCAGTTTCTGTTTCCATG
TAGGAACTTCTCACCCAACTGAGGACCATTTTCGACCTAATTATCAAGTT
CCAGTCTGCTGAGAACACCATGTACAAGAAAGCAGAGGAGGAGATGAACC
TCAGACTCAGGTTCCTCCGCAGGATCCAGGAGAACACTGAAAAGGTCAGA
GGGGACAAGTCAAATTTCTGCAAACTGTCTCCTTGTATGACATTCAGGTG
CTGCATACGCACAATGGTAGCTGAATGAGTCACACAAGGTGTTCAAACTT
CAAGTGTGTGTTTTTTTAAATCTAATTTAAAAATCTATCTCGCTGTGCTA
AATTTGTATTCAGATAGGCTTTTAGGTAGCCTGCTTTCTTTGCATAGCAC
TCAGCAATCAAGGGAAAGAGTATGGGAGTTGAACACACATCACTACAAGT
GAACAATCCCTCTCCTGTAATGCTTGCTCACTCTTATTTATTAAGTAAAA
TCTTTGATTTGTCTACAGGGCAAATGGGGCGTGACCGAGCTGGATGAGGA
AGAGGAGAAGACACGAATGGGGGAGTTTCGGGACAAGTTCCTCTCCAAGA
CAACTTCACAGCTAAGGGTTATTTCACAGTCTTACCAGGTAAGGGCAATG
AGACTCTATTTTGTGTAGTGGTTGGATGTTGTCTTATCCACCTGTGCTTA
GCCTGGATACCAGACCCCCAATCTCTAAAATATATTTTGAGTGGGGGTCT
GGTCTTGGTCCTGCAGGAAATTTCTCGCCAGCTCAAATACTGAGCGAGGA
TCCCACCAATAGAGCAACAGCAGGATCAGCAGGGAGCCATTTACACCCCT
GCCCTGATTGGATAAAGACTCCCAGCTGTATGGAGTTATTTTTGAAAATA
ACAGCAGAACTTAAAGTGTATTGAGTAGTCTACCTCTGGCTGTCCTGTGT
GTTAAATGAGATCTTGAGGTAACAATTCCCCAACCAAATAGGACATTAGG
TGCCTTATCTACAGTTACACTTTATCTGTTAGTGGGCACTGTCAGTGAAG
ATTCAAACATACAGCTGGTCAGTCAGTGAAGATACATATCCAATCAGGGC
AGGGGTGTAAATGGCTCCCTGCTGATCCTGCTGTTGCTCTATTGGTGGGA
TCCTGGCTCAGTATTTGAGCTGGCGAGAAATTTCCTGCAGGGCCAAGACC
AGACCCCCACTCGAAATATATTTTAGAGATTTGGGGTCTGGTATCCAGGC
TAACCTGTGCTGTGCAATGAGACTTAGAGCAGTAATTGCCTACATTTTCT
TAATAAATAACCCATATACTGCAAAAGCAGTAGCTTAGTTCATAAAACAA
AGAATACAATAGTCACTATTGCTGTAGAATGAGAAGGAATACTGTAAATC
TTGAAATGTTTGCTGATCTAGTTTTGCCATTATATATTGCAGTGACTTCT
TCGTCTTGAAATCATCACACCACAAATACATGCGTTTTCATTACAGCAAT
GTACTCTATTTATTATATGTTAATGTTCATATTTCTATTCATCCCCTCCC
AGGACATGGTGCAGAACTTCCTGCTGATGCTGAACGAGCATACCGACGCC
AGTCTTCGCTTCCTCAGCTTCCGTCTCGACTTCAACGGACATTACCACCA
GCGCGAACCCAAACTCAACCGCTCCCTCAGTGTCAGTTACGCCAGAACGC
GACGACGGTCAGGCAAGGACCCATGAATTTAACTCAAGAACGACCCCTTT
GTCTTCCTTGTGAAAAAACTGTTCCCTGTGAATTCAGAAAGATGCTTAAG
ATTTATAAAATCTGTTACAGACTTTACAATCAAAAACAAAATACTTCAGA
ATCTGTATAAATGTATCACATTATAAGAAATACAAAGATAGTACCATGAT
ACAGAGAAAAGGATGTTCTTTCAAACAACTTGTCAAACAAGTTAAGATGT
AGCGCTTAAGATATAAAACACAATTTTCTCATCTGGCTAACAGGCTTTCA
ATGCATATGCAAATTTAGGTAACATTTGAAGGGTTAATGTGCCACGTGTT
TGATACGCGAGCCAAGTACAAGAGCTACATGTATGTGTCCACAAAATATA
TCAATACCTGACCAATGTTAACTGGTACAAAAGATCTCTATTGTATGTAC
ATGTATGTACGCAATTAGTACAAGTGGCTTGTTGTTGCCATCCACATTGA
CTGTCTCTCGAGGATAACATTGTAAGGATATACAATATTTCCTCCCAAGT
GATATTCCGGTATTCTCATAGGAGATATGATAAAACGGCTCCTTTTCCCC
ATTGCTTTGTAAACTTAACAAAACATGAATGCTGTATTATAGTCTGAAAT
CCCCTGAGTGAAAAGTTACTTGGATGTTTTGCACTATGCTGGTATGACAA
CAGACATGCATGAATGGGCACCATCCTGCCCCAAGGATATGTATTTATTG
TTCATGTCTGAGTACACATGAATTAATGATAGAGGTATACTGTGTGTTTC
TCTATTAGAAAACGAGTCCTTTGTGTTTCATTGTTATTACAATACTCCTA
GAGTTGTTCTTTTTGTGTGGAGACAAGAATGAGTTATGACGGTACGCCGG
AGAGAGTATCGCTTTCACGGCACATCCTTTATTTCTCGTCGACCCCTGCG
GCTTCGCCGTACGCCAATTCTTTTGATCACGGGAACGGCGTAAAGGTATT
GACACCCCAC

Coding sequence (CDS) from alignment at Sc0000049:334260..342619-

>BlTCONS00062283 ID=BlTCONS00062283|Name=BlTCONS00062283|organism=Branchiostoma lanceolatum|type=CDS|length=1182bp|location=Sequence derived from alignment at Sc0000049:334260..342619- (Branchiostoma lanceolatum)
CAGGCTTGGAGGGACCTCCTTGGAAAGCTGTCTGAGTTAGGATGGCTCCA
CAACAAAATTCGCAAGTTTGTGGACAGTAAGATCTCTGACAGGGCCCTGG
GTCTGGTGGGACAGAGCTTCTGTGCCGCTCTGCAACATGAACTGACAGAG
TACTACAGACTAGTGGCCGTTCTAGATGCACAGGTCCAACAAGACCAGGA
CCTGGGCGTGAGTGTTGGCAGCGGAGGAGGGCTGACCCTGCGTAGGCTGG
TCGTGTGGTCCTACGAACCTCTGCAGAGACTCAAAACTCTGGCCTGCCTC
GTCGACTCATGCAAAGGTAGTAAGAAAGGAGGTGCACTGGCGTCTGTGGT
CCACTCCTACATGCAGACGGGGGATCCGTCGCTGCGCTCGCTGGTGAAAC
ACACGCTGAACGTGGTGTCCCAGCCCATCTGGGAAATCATGGAACAGTGG
ATCTATGAGGGGGACCTGGAAGACAACTATCAAGAGTATTTTGTTGCATC
GGACCCGACTGTGAAAGAGGACCGACTGTGGCATGACAAGTATTCCCTGC
GCAAGTCTATGATCCCAGCTTTTATCACAAGAGAACAGGCCGACAAGATC
TTGTTGATAGGGAAGACGATCAACTTCATCCGCCAGGTGTGCCGGGACAG
GTCCCCCTTAAAGACCAAGGCAGTGGTGAAGACTGGGGAGGCTGAGGAAG
AAGGTGACCTGTTCACGAGGGATGTAGACGGTAGTCTGCAGCAGGTGATT
GACACAGCCTACCGAGAGACCAGCCGGATCCTACTGGACATCCTGCACAC
CAAGTACAAGTTCATGGACCATCTCAAGGCCATGAGACGGTACCTACTAC
TGGGACAGGGGGATTTCATCAGACATCTTATGGACCTGCTGGAACCAGAC
CTTAACAAACCTGCCAGTACCCTGTACCTGCACAACCTGACTGGTATCCT
GGAGACTGCCATCAGGGCCACTAATGCACAGTTTGATGACCCTGACATCC
TCAAGAGAATAGATGTACGACTACTGGAGGTGTTTCCCCAGGAGACTGTG
GCTGGGATGTGTTCAGTCTGGATTATCACGTGGACGGCCCCATCAGTACG
GTTTTCACGCCGGAGACCAAGATCCAATACCTGCGGGTCTTCAACTTCCT
GTGGCGTGCCAAACGGATGGAGTACACACTGA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00062283-exon-Sc0000049-1564993656:342435..342619BlTCONS00062283-exon-Sc0000049-1564993656:342435..342619Branchiostoma lanceolatumexon
BlTCONS00062283-exon-Sc0000049-1564993656:341808..341943BlTCONS00062283-exon-Sc0000049-1564993656:341808..341943Branchiostoma lanceolatumexon
BlTCONS00062283-exon-Sc0000049-1564993656:341336..341502BlTCONS00062283-exon-Sc0000049-1564993656:341336..341502Branchiostoma lanceolatumexon
BlTCONS00062283-exon-Sc0000049-1564993656:340836..340946BlTCONS00062283-exon-Sc0000049-1564993656:340836..340946Branchiostoma lanceolatumexon
BlTCONS00062283-exon-Sc0000049-1564993656:340495..340600BlTCONS00062283-exon-Sc0000049-1564993656:340495..340600Branchiostoma lanceolatumexon
BlTCONS00062283-exon-Sc0000049-1564993656:339983..340107BlTCONS00062283-exon-Sc0000049-1564993656:339983..340107Branchiostoma lanceolatumexon
BlTCONS00062283-exon-Sc0000049-1564993656:339603..339667BlTCONS00062283-exon-Sc0000049-1564993656:339603..339667Branchiostoma lanceolatumexon
BlTCONS00062283-exon-Sc0000049-1564993656:338871..339008BlTCONS00062283-exon-Sc0000049-1564993656:338871..339008Branchiostoma lanceolatumexon
BlTCONS00062283-exon-Sc0000049-1564993656:338261..338468BlTCONS00062283-exon-Sc0000049-1564993656:338261..338468Branchiostoma lanceolatumexon
BlTCONS00062283-exon-Sc0000049-1564993656:337872..337960BlTCONS00062283-exon-Sc0000049-1564993656:337872..337960Branchiostoma lanceolatumexon
BlTCONS00062283-exon-Sc0000049-1564993656:337447..337578BlTCONS00062283-exon-Sc0000049-1564993656:337447..337578Branchiostoma lanceolatumexon
BlTCONS00062283-exon-Sc0000049-1564993656:336776..336916BlTCONS00062283-exon-Sc0000049-1564993656:336776..336916Branchiostoma lanceolatumexon
BlTCONS00062283-exon-Sc0000049-1564993656:336332..336451BlTCONS00062283-exon-Sc0000049-1564993656:336332..336451Branchiostoma lanceolatumexon
BlTCONS00062283-exon-Sc0000049-1564993656:334260..335417BlTCONS00062283-exon-Sc0000049-1564993656:334260..335417Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00062283BlTCONS00062283-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000049genomeSc0000049:334260..342619 -
Properties
Property NameValue
GeneIDBlCUFF030665