BlTCONS00061434 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00061434
Unique NameBlTCONS00061434
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000048:814805..819981+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00061434 ID=BlTCONS00061434|Name=BlTCONS00061434|organism=Branchiostoma lanceolatum|type=mRNA|length=5177bp|location=Sequence derived from alignment at Sc0000048:814805..819981+ (Branchiostoma lanceolatum)
GCCAAGTTGGGCTAATCTGCACTTTATATTCTCATTGCAAGCTGATCAGA
TGATTTGTGAAAATGATGAATCGACACTTCTCGCTCCAGCACTTCTTCGA
TCTGTCAGAGGGCTGTGCAGGAATCACCTGGCATGGTAGATAATGTAGGG
TCGTTTCTCTTTGGGTTTTGGCCTCTCTTTCTTCCCTTTCTTTGTTATAA
ATCGCGGAATTGATTTATTAATAACTCGATCAATCTGTACAAGCCGGGTT
GTGACCTTGCTTTGGTTGACTGCTGATAGTGGTTGATAGCCTGGCACCCT
TGTGAGGCTTGTGTTATCACAAGGGGACTATGCATATGGAATCTTCATGA
CACTTGTACTGCAAGCAAATATTTCACCGCGATATCTAGCAGAAGATTTA
TTCTTCTATCAATCACAGCACATTGCCTTTGAGTCAAAATGTGTAGTTTG
TTGTATGAAATGTATATCATAACAAACCCAACCCTAAATGAGTTGTTAAA
ATCTTATGTGCAACAGTCATGTACTTTTGTTGCACTGATGCCAAGTGGCT
TTTCTACCACATGTAAACCAGTGCAGTGATGGAGCTCCAAAGTCTTTAAG
ATAGTATTAGAATATGACTTTTGCCACTGTGCAAGAATGAAACATAACAC
ACATTATATATCTATAATTCATAGAACCCAGTATATCCTTTTTTTCTATC
AATGATATGAGTGAGTTTGAATTAAGTATCTAGAATAAGTTACGATGAGC
CTTTTTCAAGTTTTTGCTCTTCTTCCTCTGAGTCTGTTTGACTAGTATAT
GTGTATGCTAAAAGTGCATCACTACCAGTCCAGCATCCTCCATAACTTCA
TTTGATAACATTAGCACTACACAACAGTGATGTCAGTGATATGAATGATT
TGATGGGAAAAGTGTCTTGGAAGTTTCTCTTGCACTGTGGTACTGCAGTG
CCATCTAGCAAGTTTCCACAGAAAGACAGGTCATAGTGATGAAGGAGTTG
AAGCAATAACCTCCTTGGTTGAAGGCACACTTGAAAAACTTGGGGCTATA
CTGCTCGTTTCACCTGTGTCTAGGCCTTATTTCTTGGCCTTGAGGTTGCC
ATGGCATCTTCCTATCTCTATCAATGGCACCATTGTGAACAACTTAGCGC
CAGGTAGTTTTGTTCTCAGCCTGTGTGTCCCAGATATCAATGAAAATACT
GTTGTTCATAGCACATTCTGTATGCATTTCCAGAGTGGCCACTGTGGAGA
CACTGACTCAGCACTACATTCTGATGCCGCCGTACGTGAAGGATGGGTAC
CTGGTCCACATCATCCAGAAACTGCAGGAGGAACATGAGGGTTCTTCTGT
CATTGTCTTCACCAACACATGCAAGTATGTCCGAAGCAACACAGATGTAA
CTTTAGCCTGTATGATATATACATGTATATGTCAGAGAAGAGGATTGATG
ATTCTAACGAGATCCTGATTGGGCTAAATTTAAAGATATAATTCGCTTAA
AAGACAGAACTTTTCAACTTTGATTCATGTCATTCAGCAGATCAATGGAT
TGACTTGAAAGTCAGGATTTATAAATAAGAGACCACCCTAAACCCATTCC
AATCATATACGTTGGAATAGACATTTGATTTAGTCAAGGATACCCTACCA
AATGTCTCTTGAACTGCAGGAACCCAAAAGGTCACTTTTTCAGACCGTGC
AATGGCTTGATACAGCTACAGATTTTGTTTGGCAATCTCAATGTGATTTG
AATAGCTGTGATTCTGTACATTTGTCATTGTGTTTGAGACAGGGAGTTTT
AGGAGTGCCTGATATCAAATTTTTTTCTCCCTTTTTTTTCGTCAGGAATT
GTGAACTGGTTGCCATGATGCTGACCAAGTTGAAGTTCTCCTGTGTTGCC
ATCCACTCCAAAATGTCACAGGTACCCTTTTCTGCCATGTTGTTCCTCTG
ATATCTACTTTGGACCTTGGTTACAAACTCCACACTGTAAAATGTATGGG
AGGATGAACCTTGTCAGTGCTCCACATCTATCTTTATCTATATCTTTAAA
AGGGAAAAATGATGACAAATGTCAAACTGCACCACTTAAATTTGTACCTA
AGAAACAACTACAACTTGTCAGACTACAAGGATCTTGTAGTCTGATAAGT
TGCTGTTGTTTCTTAGTCTTTGTCATATATCATGCAACATCTTCATTTAT
CTAAAGAGTAGTGGACTTGACATACTTGCATTTGGTACACCAAGCCCATT
TTGTAACTTTGCAATCTTTAAAGGAGCAAATAGTTATATCAAAGCTTGAA
AAAGATTATAAACTTCAACTGTGATTGACTTTAGTCTCTATTGTTTTTAT
CCTCCAGAGAGCGCGCCTCGCCTCCTTAGCTAAGTTCAAGTCCAACGTTG
TGAAGATTCTCATTGGAACAGATGTTGCTAGTAGGTAAGTGGGCTGACTT
GAAATCTTAAACTTTATGTGCAGTGAAAAAGCTTTCAGCAATTGATAACA
CAGTAATCAATGGAATGAAGTTTTACACAGACAGTCTGGATTAAACTTGC
GGAAAATGTTACGTACCATCTCTATCAGAAAGAAGACTAACATTAATTTT
TTTTGGTTAATTCTGGGTTTTTTTTAAGCTTCATTTGTGGAGGTGTATTT
TGTACTTAGTCTAGTAAATGATATATGATACTATTTTGCAGAGAAATGGG
CAGAAAAATGATATTGGGCCTAATTGTGATACTGTAGTTTAGCAAAATGA
AAAAGTGCCTTGCAGTTGTTTCCATTTTTGAAACAATGTTCTTAAACAGC
TGTTATTTTTTACATCCAACATTATGTTCCACATGTGATCTACAAGAATT
TGACTATTCCTCCATTGATTGTTGTACACAGGGGCCTGGACATTCCCATG
GTACAACTGATATTGAACCTGGACATTCCTGAGTCTCCCAAGACCTACAT
ACACAGGGTCGGCAGGACTGCACGGGCAGGTAACCAACATCTTCATTGTG
GGCTGAACAATGAATGGAAATGCCTCAATGCATCTGAATTATGAATGTTA
CAAAATTTCTGATATATTTGCGTTGAAAATTGAAATAATATCCCACTAGT
TGTGTCTTCGGACTGAAAGGAAGGTACAGTATGTGGAGAGGAAAGAATAT
TGATCGAAAACCGCCACTCTCGTTTGTATTTCTTTGTTACAAGGAAATGT
TTCAAGTCATCAGCATGTTCAAGCTTTAAGCAGAACCAAGGAGGTTTAAA
AAGGAATGTCCTTGACAGAACACAGGATACAGAACTACTAGTTTAAACTT
CAAGTAGCTCAACTATCATTTACAACCGACTAACCAACCAAGCAGACAGA
AGTATTGCTTTATATGTTGTCTGATGTTTTGTGTGTGTGTTATCTGTTTT
TCCCCAGGTCGTGGAGGGATGGCCATCACGTTTGTGACCCAGTTTGACAT
AAGACTGGTCCATGCTATAGAGGAGAGAATAAGTGAGTGTTTCAAGTTTG
AATGACATGCCATGTACAAGATACATTGTACCAGTATTGTATTGTTTGAT
GGAGTTTGGTCTCAGCCATCATTATGTATCAAATGTAGACTGTGGCTTGT
GGAACAGCTGTACATTGATTTTTTATAAGTTACACATGCAATTTAATAGC
TGACAAAACATAGGCCTACCTCCTTTTAAAACAATTACCCGGTATAACTA
GTACTGTAAAGAAGCATTCTGATATGTGTTATTCTATACCAACAAACTAA
TCAGGCAACTTGTGCATATTTTGCCATATTTCATGCTATTGTATGTATTG
TATTGATTCCTTTGCAGCTGTGAGATAATGAAGGGTGTGGCTGAAACAAT
ATTCAATTTGCATAACAGAGAACGTTCACTGATAGGTTTTGTTTCTGCAA
CTTCTTTCCAGACACAAAGCTAACAGAGTACAAAGTCAGTGACAAAGAGG
TGACAAGAATTCTCAGTGAAGTCAATGTGACAAAGAGAGCCTGTGAAGTG
GTAAGCTTTGTTCTTTTCTAAATCTCATTTCTTTAAATTGTTGCATAAAC
AGTAACCTTGTACAATCAAGGGATGCCATGTGTAGATCTTTTCAAGAGAG
ATATAGAATTATGTAGGGTATTGAACAATACAATTCTGACACAACATTTT
AGTCTGACGTTGTTTTATTATCTGTTTGTTTTACTCTCCTCAGAGTCTTG
ACGAGCAAGATTTTGATGAGAAGAAGGAAATCTACAAAAGGAAGGAGCTT
ATCTTGGAAGGAAAGGTAAATATACATTGTACAAGATGTTTTGTCTTTTG
TTCTTTTCTTCTTCATAGATCTACCCAGAACAGTATTCCATCTTGTTATG
TAGCCATATATCTTCATAACATGCTAGTAGATAAAGTGTTGTCTATTATG
TATAAACCAAACCTACTTCCAGGATTATCTACTGTAAATTCTTTTATTTT
TGCCTATTTGGGGAATTTCATGATAAAAGGGGACTTTTCATTGGGTTTAA
TGTTCACGTTTGAAACAGTTCTGTGGTAATACATTGGAAATGCAAATTCA
TGGTGAAGAGGTTGCAGAAAAAAAGCAAAAATAAAACCACTGCACACATT
ACAAGATTTACTGTATCATGAAGCCTGTTTTTGTCACATCTGCAGGATCC
AGACAGATATGAAGAAGAGCAGCGGAGAGCCAAAAAGAAGAGGAGAAAAA
TGGTCAAAGCCAAAATCAAAGCAAGAAGAACAAAATCAGCAGCAAATACT
AGCAAAGAATAGTCTTATACTATGTCTCCTGTTGAAAACCTACTCTAAGT
ACCGGAATCACTGACTGCTTTTTCACAGTTTTTCAACTTTGTGATGGAAT
GTATTAATAGGGCATTGTTGCAAAACTTTGTATATGTTTATATTGAATTG
TCATTTTCTCTCAAGAAATATATTCATCACTTTTTGAAATAATACTGTGA
ATGTATGAGTCGAGATATCCTACTGAGTTCTTGTGCCTTTGCATAAGTCA
TTGAACTAATTGTTCACACTCTTGTTTTACCTCATGTCATACTTTTAATA
AAGCAAGTCAGTAGGACAAAAAACAAACAAATGGTATTTCATATCAAATG
TTTGTTACTTTACATCCACATATATCCACTTCCAATCAACTACTCTGATA
TGTATTTGTATTACTCAAATAAAGATC

Coding sequence (CDS) from alignment at Sc0000048:814805..819981+

>BlTCONS00061434 ID=BlTCONS00061434|Name=BlTCONS00061434|organism=Branchiostoma lanceolatum|type=CDS|length=336bp|location=Sequence derived from alignment at Sc0000048:814805..819981+ (Branchiostoma lanceolatum)
ATGGTACAACTGATATTGAACCTGGACATTCCTGAGTCTCCCAAGACCTA
CATACACAGGGTCGGCAGGACTGCACGGGCAGGTCGTGGAGGGATGGCCA
TCACGTTTGTGACCCAGTTTGACATAAGACTGGTCCATGCTATAGAGGAG
AGAATAAACACAAAGCTAACAGAGTACAAAGTCAGTGACAAAGAGGTGAC
AAGAATTCTCAGTGAAGTCAATGTGACAAAGAGAGCCTGTGAAGTGAGTC
TTGACGAGCAAGATTTTGATGAGAAGAAGGAAATCTACAAAAGGAAGGAG
CTTATCTTGGAAGGAAAGGGATCCAGACAGATATGA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00061434-exon-Sc0000048-1564993656:814805..814939BlTCONS00061434-exon-Sc0000048-1564993656:814805..814939Branchiostoma lanceolatumexon
BlTCONS00061434-exon-Sc0000048-1564993656:816038..816178BlTCONS00061434-exon-Sc0000048-1564993656:816038..816178Branchiostoma lanceolatumexon
BlTCONS00061434-exon-Sc0000048-1564993656:816650..816725BlTCONS00061434-exon-Sc0000048-1564993656:816650..816725Branchiostoma lanceolatumexon
BlTCONS00061434-exon-Sc0000048-1564993656:817162..817234BlTCONS00061434-exon-Sc0000048-1564993656:817162..817234Branchiostoma lanceolatumexon
BlTCONS00061434-exon-Sc0000048-1564993656:817686..817783BlTCONS00061434-exon-Sc0000048-1564993656:817686..817783Branchiostoma lanceolatumexon
BlTCONS00061434-exon-Sc0000048-1564993656:818212..818286BlTCONS00061434-exon-Sc0000048-1564993656:818212..818286Branchiostoma lanceolatumexon
BlTCONS00061434-exon-Sc0000048-1564993656:818716..818804BlTCONS00061434-exon-Sc0000048-1564993656:818716..818804Branchiostoma lanceolatumexon
BlTCONS00061434-exon-Sc0000048-1564993656:818998..819070BlTCONS00061434-exon-Sc0000048-1564993656:818998..819070Branchiostoma lanceolatumexon
BlTCONS00061434-exon-Sc0000048-1564993656:819450..819981BlTCONS00061434-exon-Sc0000048-1564993656:819450..819981Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00061434BlTCONS00061434-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000048genomeSc0000048:814805..819981 +
Properties
Property NameValue
GeneIDBlCUFF030355