BlTCONS00052595 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00052595
Unique NameBlTCONS00052595
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000035:1840525..1844238+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00052595 ID=BlTCONS00052595|Name=BlTCONS00052595|organism=Branchiostoma lanceolatum|type=mRNA|length=3714bp|location=Sequence derived from alignment at Sc0000035:1840525..1844238+ (Branchiostoma lanceolatum)
TCCTCAAGCATCTGTGTCTTGTGGAACGACTCCACTGCGATCATGGAAGG
TTACAGGTAGAAAAATATGGTTTTCATTGGTCAGAAACTACCCGCATTGG
CACCCTTTCTAGCGCTGAATTGATGCAGGGTTTACAGGTTTCACATAATA
CGCAGCATATACATATCTTATTCACACTTGCATTATGTAGATTTGTCGCA
AGGGTCTGGGCGGCTGCCATTCGGCGCCACCAGGTGACCTCAATACGACC
TTCCCCAACGGAAGTCAAGTACCCATTTACACCTGGGTGGAGTGAGGAAA
GTCATGTAAAGTGCCTTTCCCAAGGGAACAAGATCGGTGACATGACAGGA
TTCGAACTCGGGACCTCTTGCCGGTTCTGAGCCGACCGCTCTGCCGTTGC
GCCACACGACCCCACTAGTAGGGGCAGCAAACAACTGTGATAACAATTTT
GCAAATCCTGAGAAACCATCAAGCCTTGTTCCGGTCTTTGATCAACGTGC
ACTAGTATATGTCAACAATTTCTTCTATTTTGACAGAGTGGATTATTTCC
CGGTGGGCGGAAGTGCAGACACTATACGGACGGTGGACGTGCCGCCGACA
ACAACGGTGGTGGAGCTGACAGGGCTGCTGACGGGGCAGCAGTACAACGC
CACGCTGGTCACCACAGGACTCTACTCAGTCAACAGTGTTCCCGAATCGG
TGGCTGGAGGTAAATTTCCCTGATTCTTTCATCCTCATAATCACCATTAT
CACCATTATCACCATTATCACCATCTCTGTCCCTCTATTTCTCTCTCATA
TTTCCCTCCATCTGCATGTTAATGTTGTTTTCACCTACTTGTCTGCACCC
TTTGGGAAAGTAATTTATATGCCCATTTTGCTTCCATGCTTATAAATTGT
AAGTAAGTAAATGTTGCTGGTAACGTCCTTTTCTCTAAATTCACCGTTCA
GTGTTTCCTGTTCCGAGTTTCTCCTTAAACATTCCTGATCATTATAATAA
CTTTAAACAAGACTCTAATGATACGTCTACCGAGCACGGCGGTAACACCA
CACACGAATCCTTTTCGTCATGTCATACGTCAATCATATTGCAGAGACGC
ATACCTTAAAGGTGAAGATTTCGGGTGGAGACGGGAGAGCGTTGGGAAAC
AGGCGGCCTTATCTGATGGATGCGGAGTCGGAGACGTATGACGCTAACGA
CCCGAACGTCACCAGCAATTACGTCTTCAAGTGGTACTGTAAAAAGGTCC
GTACGGAATCAATAATGGATAGTGTAAGTGTAGTAATGTGTAGGCATAAC
GTATGGGATTTATGGCGCCTGGCAAAGAAAGAGAGATCATTTTCTAGGTT
TCTTCAATTACATGCATGCGTACACGTGGAGTTGACGGTAATGGTTGTAA
GGCCGTTAGGTTAGGAACGTCTAATTACGTTCCAACTTTAAAAATTCAAA
CACCTTCGACTTTCCTTCCATGGAATACAATTTATTAAGTATTTAATTTG
TTTTCATCTACCATATTATTCGTACTTATATGTGTATTTTGTTTACAGCT
GGTTTCAACATCAACAACACCTGCAACCCCAACAACTAATACGACGATGA
CGCCTACCCCTTCCACAGACGCGTCAGTGGCTAGTTCTACCTCCGCTGCA
ACTACATCTTCCTATTTCAACACGACAATTGCGTTGTACTTCAATACCAC
CATGTACAATGCCACGACTCCTTCAATGTCAACGTCAACACCAGTGACGT
CTAGGCATACGCAGAAGGTTGTAAACACCACGCCGGTTCGTTACCAAGAC
GGCATCGCCGTGGTACACAGCCACTGTGAAACAGGCGACTACGAACTGCT
CTGGAAAGGAGATGCTAAGATCTACTTGGACACCTATGATCTGGAACCGA
ACACCACGTACGTCATCAAGGTGGCGGCCTCCAAGGAGCTGGTCCACCCC
CTCGGGTACACGTACATCGGAGAGGAGTCCTTTGAACAGAACGTCTTCAT
CGTGGAGGGAGATCCTCCCATGATGTCCATCAAGTAAGACCTATTTCTGA
ACCACAGAAACTGCTTTCACAATTATTCTCTAAAAAACTGTTCCACATGG
TTCTAGTTTTGTGGCGTAGGATGTATTCCTCTTTAGTATATCTATTACAT
GGTTTGAATGTCATCATAGAGTGTGTCATGCAGACCGATTTTTCTTAAAT
TGATGATTGGCACGCCCCACAGACTTGAAGTACATTGTACCAATTTCCTA
ATTACAGATTGTTAATCAAGTACATAATGTCCTTGGGAAAACATACAATA
CTTCCTGTCAATCATTGTCAGCAAAACGCTTTGGGGGTATCAAATGAATG
TGCTCAATCTGAACGCAGTGGCTCTGTGAAATATACTATTTTTGTAGTAC
ATTTTCATATCTAGGTATCTCATTTTCTTACAGTTGCATTCGGAACTGCA
AGTGGGCTGTAGATGTGACCGAGTCTCTGGCGCTGCGGGGGAACTGTACC
TCCTGTGAGAAGAACTCTGAGCTGACGTACGGATGGCGCCTGTTCAGGGA
GGTCAACAACACCATCGAAGAGATACACGACTGGAACTCTCTCACCAGCA
CAGGTACAGCGGACACGGGTCGTGCGGGCGTATAAAGTCGTTAGATTCCA
GTGAACGTACAAAAATTCCCATTCGGGCGGCGACCTAAGATTTAACAGAT
CGCTCAACGAATTTCATAGACAAAAAACGAACGTTTTCGCGTGTTTTGTT
GTCTTTTCAGTCATACTTTTACATTTCGCATGATATTCCAATTATGAAAT
CAAGGGTTACACAGATCCAAGTTAGGTCGCACCGAGAGCGCAGCGCGATC
ACCGTCTAGTGGACTGGCGGCCTTACTATCTAATGGAGTTCAAGAACAAC
ATGTAGAAGAAAACAAGAAATATGGTTTGGGACGGAAAAAGTAGTGAACT
TTTTCTATGATCCTGTAAGTAACGACATTTTGCATTTGTAACCACAGGGA
AAAAAACATCAAGTCTAGCGATCAAGGCGGACCAATGGGATGTCAGAGCA
GTCTACCGCTTACGCCTGAATGGCTTTCCTCCGGATGGCCTTCCTCCCGG
CTTCATCGAGATCAGATACCCCACCTCACCACCCCTCTACACACTGGACT
GCGTCATGATCCCAGACAAAGGTAGGGGAAAACAGCTCGTTTCATGTCTA
TATGAATCATAGCTTTAATGTTACTTGTGCATTTATGGTTCAAATTTTAT
AAAGACATCTCGGAGATGCAGGATGCGCAGGAGGTCGTTACCATGTGAGT
TACACGTTACACTTGTTCATGCTGTGGTGGAAAAAATGTGAACATGTAAT
AACAGGAAGAAAACTGATCCACACAATATTCCCTACATTCATCCGCGTCT
GAAGAGTACCCATAACGTTATGTCTATCAACTATTTGAACTTACATCGAA
CTGTACATTCTGTTCCCAAAATGCAGGAATGTTGTACGAAACAAACTTCT
CAGCCAGCTGTGAGCTGACCGGGTGGACTGGCGAGCTGGAACCACGTCTG
ACGTATGACTTCACGTCGGAAGTGAACGCCCAGGTGACACACCTGGCGAG
CGTGACTAGGATGTCCAAGATTACCGTGCCGCTGGAACTCGTGGCCGGGG
ACCCTGCCAGCGCATGCGCTGTGCTCATCAACGTGCAGGGACATACTGGA
GGTGTCCTAAGGGC

Coding sequence (CDS) from alignment at Sc0000035:1840525..1844238+

>BlTCONS00052595 ID=BlTCONS00052595|Name=BlTCONS00052595|organism=Branchiostoma lanceolatum|type=CDS|length=1446bp|location=Sequence derived from alignment at Sc0000035:1840525..1844238+ (Branchiostoma lanceolatum)
TCCTCAAGCATCTGTGTCTTGTGGAACGACTCCACTGCGATCATGGAAGG
TTACAGAGTGGATTATTTCCCGGTGGGCGGAAGTGCAGACACTATACGGA
CGGTGGACGTGCCGCCGACAACAACGGTGGTGGAGCTGACAGGGCTGCTG
ACGGGGCAGCAGTACAACGCCACGCTGGTCACCACAGGACTCTACTCAGT
CAACAGTGTTCCCGAATCGGTGGCTGGAGAGACGCATACCTTAAAGGTGA
AGATTTCGGGTGGAGACGGGAGAGCGTTGGGAAACAGGCGGCCTTATCTG
ATGGATGCGGAGTCGGAGACGTATGACGCTAACGACCCGAACGTCACCAG
CAATTACGTCTTCAAGTGGTACTGTAAAAAGCTGGTTTCAACATCAACAA
CACCTGCAACCCCAACAACTAATACGACGATGACGCCTACCCCTTCCACA
GACGCGTCAGTGGCTAGTTCTACCTCCGCTGCAACTACATCTTCCTATTT
CAACACGACAATTGCGTTGTACTTCAATACCACCATGTACAATGCCACGA
CTCCTTCAATGTCAACGTCAACACCAGTGACGTCTAGGCATACGCAGAAG
GTTGTAAACACCACGCCGGTTCGTTACCAAGACGGCATCGCCGTGGTACA
CAGCCACTGTGAAACAGGCGACTACGAACTGCTCTGGAAAGGAGATGCTA
AGATCTACTTGGACACCTATGATCTGGAACCGAACACCACGTACGTCATC
AAGGTGGCGGCCTCCAAGGAGCTGGTCCACCCCCTCGGGTACACGTACAT
CGGAGAGGAGTCCTTTGAACAGAACGTCTTCATCGTGGAGGGAGATCCTC
CCATGATGTCCATCAATTGCATTCGGAACTGCAAGTGGGCTGTAGATGTG
ACCGAGTCTCTGGCGCTGCGGGGGAACTGTACCTCCTGTGAGAAGAACTC
TGAGCTGACGTACGGATGGCGCCTGTTCAGGGAGGTCAACAACACCATCG
AAGAGATACACGACTGGAACTCTCTCACCAGCACAGGGAAAAAAACATCA
AGTCTAGCGATCAAGGCGGACCAATGGGATGTCAGAGCAGTCTACCGCTT
ACGCCTGAATGGCTTTCCTCCGGATGGCCTTCCTCCCGGCTTCATCGAGA
TCAGATACCCCACCTCACCACCCCTCTACACACTGGACTGCGTCATGATC
CCAGACAAAGGAATGTTGTACGAAACAAACTTCTCAGCCAGCTGTGAGCT
GACCGGGTGGACTGGCGAGCTGGAACCACGTCTGACGTATGACTTCACGT
CGGAAGTGAACGCCCAGGTGACACACCTGGCGAGCGTGACTAGGATGTCC
AAGATTACCGTGCCGCTGGAACTCGTGGCCGGGGACCCTGCCAGCGCATG
CGCTGTGCTCATCAACGTGCAGGGACATACTGGAGGTGTCCTAAGG
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00052595-exon-Sc0000035-1564993656:1840525..1840580BlTCONS00052595-exon-Sc0000035-1564993656:1840525..1840580Branchiostoma lanceolatumexon
BlTCONS00052595-exon-Sc0000035-1564993656:1841061..1841233BlTCONS00052595-exon-Sc0000035-1564993656:1841061..1841233Branchiostoma lanceolatumexon
BlTCONS00052595-exon-Sc0000035-1564993656:1841619..1841770BlTCONS00052595-exon-Sc0000035-1564993656:1841619..1841770Branchiostoma lanceolatumexon
BlTCONS00052595-exon-Sc0000035-1564993656:1842073..1842557BlTCONS00052595-exon-Sc0000035-1564993656:1842073..1842557Branchiostoma lanceolatumexon
BlTCONS00052595-exon-Sc0000035-1564993656:1842958..1843127BlTCONS00052595-exon-Sc0000035-1564993656:1842958..1843127Branchiostoma lanceolatumexon
BlTCONS00052595-exon-Sc0000035-1564993656:1843522..1843695BlTCONS00052595-exon-Sc0000035-1564993656:1843522..1843695Branchiostoma lanceolatumexon
BlTCONS00052595-exon-Sc0000035-1564993656:1844001..1844238BlTCONS00052595-exon-Sc0000035-1564993656:1844001..1844238Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00052595BlTCONS00052595-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000035genomeSc0000035:1840525..1844238 +
Properties
Property NameValue
GeneIDBlCUFF025865