TCONS_00008718 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008718
Unique NameTCONS_00008718
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length467

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008718 ID=TCONS_00008718|Name=TCONS_00008718|organism=Clytia hemisphaerica|type=transcript|length=467bp
ATTAGCACTATTGGATACAGAAAGACAGCTTGAATCGGCGGAGGACTTTG
ACCGTCTTGTCCTCGGCTCGCCAAACAGCTCCATTGTTTGGATACAGTAC
ATGGCTTTTCATCTACATGCAGCTGAGGTCGATAAAGCTATCGCTGTTGG
CCGAAAAGCCCTCAAGACCATCTCTTTCAGGTACTTTGGtcattattttg
ttaaaatattttctaaacgATTTCTAAACACTCACACAAAGTTTTCCCGG
CAGTTCCAAGAGGTTTATTACACTCCTATTTCAATAACCTGATCAGAATC
TTTTAGCCAGATAACATGATAGAATGATTTAGCAAAAAATACTCTCTCGG
TAGGATTTTCAAATCGATATATTTCAAGTGGGTAGCTAGGCGGTCCCAGC
GGATCTGTGACACAGAGGTGCATTTCATTGTGGTAACAACAGGTTAATCC
ATTTTAAAAAGTAAAGG
Run BLAST on NCBI

transcript from alignment at sc0000087:337904..338370+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008718 ID=TCONS_00008718|Name=TCONS_00008718|organism=Clytia hemisphaerica|type=transcript|length=467bp|location=Sequence derived from alignment at sc0000087:337904..338370+ (Clytia hemisphaerica)
ATTAGCACTATTGGATACAGAAAGACAGCTTGAATCGGCGGAGGACTTTG
ACCGTCTTGTCCTCGGCTCGCCAAACAGCTCCATTGTTTGGATACAGTAC
ATGGCTTTTCATCTACATGCAGCTGAGGTCGATAAAGCTATCGCTGTTGG
CCGAAAAGCCCTCAAGACCATCTCTTTCAGGTACTTTGGtcattattttg
ttaaaatattttctaaacgATTTCTAAACACTCACACAAAGTTTTCCCGG
CAGTTCCAAGAGGTTTATTACACTCCTATTTCAATAACCTGATCAGAATC
TTTTAGCCAGATAACATGATAGAATGATTTAGCAAAAAATACTCTCTCGG
TAGGATTTTCAAATCGATATATTTCAAGTGGGTAGCTAGGCGGTCCCAGC
GGATCTGTGACACAGAGGTGCATTTCATTGTGGTAACAACAGGTTAATCC
ATTTTAAAAAGTAAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004896XLOC_004896Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008718-exon-sc0000087-1491911889:337904..338370TCONS_00008718-exon-sc0000087-1491911889:337904..338370Clytia hemisphaericaexon
TCONS_00008718-exon-sc0000087-1510915933:337904..338370TCONS_00008718-exon-sc0000087-1510915933:337904..338370Clytia hemisphaericaexon
TCONS_00008718-exon-sc0000087-1575043694:337904..338370TCONS_00008718-exon-sc0000087-1575043694:337904..338370Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087supercontigsc0000087:337904..338370 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.220936	0	0.172956	0	0	0	0	0	0	0	0	0	0.317677	0	0	0	0.335826	0	0.439881	0	0	0	0.25216	0	0	0	0	0	0
Blast
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BLAST of TCONS_00008718 vs. Swiss-Prot (Human)
Match: RRP5 (Protein RRP5 homolog OS=Homo sapiens GN=PDCD11 PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 3.139e-22
Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = 2 
Query:    5 ALLDTERQLESAEDFDRLVLGSPNSSIVWIQYMAFHLHAAEVDKAIAVGRKALKTISFR 181
            AL+D  RQ ESA+DFDRLVL SPNSSI+W+QYMAFHL A E++KA AV  +ALKTISFR
Sbjct: 1594 ALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFR 1652
The following BLAST results are available for this feature:
BLAST of TCONS_00008718 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RRP53.139e-2272.88Protein RRP5 homolog OS=Homo sapiens GN=PDCD11 PE=... [more]
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