TCONS_00007664 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007664
Unique NameTCONS_00007664
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length580

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007664 ID=TCONS_00007664|Name=TCONS_00007664|organism=Clytia hemisphaerica|type=transcript|length=580bp
TTTTCGAACATTCTTACGGCAGCGAGACCTTGGGAGGATGAGAAGTGGTC
CAGACGACATCTTTGAAATATCGATGCAGGAACCATACAAAACGCGCAAG
TTTCTTCAAAAACGAAAGTCTTTTTTTCCAAAGATTCCATGCTTTGTATA
TTGGTAAATCTGGTAATAAATAGATTTTTTGATTGTTAGTTTTTATATTG
ACTTTCTCTAGGGATTCTTTAATATGAAGCTTGACCTTGAAAGGCTGGTT
TTAAGTACCTCTAGAGATTTTAAACCTAAAACCATTTTTCATTTCGTCCA
GTTCAGTCTGGTTCTATGTTTTGTTTATTTCGTTATTTAtatgtattatt
ttttatttcatactAGCTGTTGTTTGGGCCTTGTCTGAGACGGCTCtgct
gcaattagattttttaataGAATCAGAAATTGGGGGCAGAGCTGATATAA
TAataggttgaagatattttaaattatgttaaaaattttaCCGTCAACAC
TGGACTGCTCTAACTTGGCTTGGGatggcaattcagccaccattcattac
agtcaagtatcaatatttgaggtattacga
Run BLAST on NCBI

transcript from alignment at sc0000078:478998..479577

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007664 ID=TCONS_00007664|Name=TCONS_00007664|organism=Clytia hemisphaerica|type=transcript|length=580bp|location=Sequence derived from alignment at sc0000078:478998..479577 (Clytia hemisphaerica)
tcgtaatacctcaaatattgatacttgactgtaatgaatggtggctgaat
tgccatCCCAAGCCAAGTTAGAGCAGTCCAGTGTTGACGGtaaaattttt
aacataatttaaaatatcttcaacctatTATTATATCAGCTCTGCCCCCA
ATTTCTGATTCtattaaaaaatctaattgcagcaGAGCCGTCTCAGACAA
GGCCCAAACAACAGCTagtatgaaataaaaaataatacataTAAATAACG
AAATAAACAAAACATAGAACCAGACTGAACTGGACGAAATGAAAAATGGT
TTTAGGTTTAAAATCTCTAGAGGTACTTAAAACCAGCCTTTCAAGGTCAA
GCTTCATATTAAAGAATCCCTAGAGAAAGTCAATATAAAAACTAACAATC
AAAAAATCTATTTATTACCAGATTTACCAATATACAAAGCATGGAATCTT
TGGAAAAAAAGACTTTCGTTTTTGAAGAAACTTGCGCGTTTTGTATGGTT
CCTGCATCGATATTTCAAAGATGTCGTCTGGACCACTTCTCATCCTCCCA
AGGTCTCGCTGCCGTAAGAATGTTCGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004337XLOC_004337Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007664-exon-sc0000078-1491911889:478998..479577TCONS_00007664-exon-sc0000078-1491911889:478998..479577Clytia hemisphaericaexon
TCONS_00007664-exon-sc0000078-1510915933:478998..479577TCONS_00007664-exon-sc0000078-1510915933:478998..479577Clytia hemisphaericaexon
TCONS_00007664-exon-sc0000078-1575043694:478998..479577TCONS_00007664-exon-sc0000078-1575043694:478998..479577Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:478998..479577 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.860646	0.0932517	0.324867	0.635576	1.16063	0.40762	0.122944	0.230197	0.0805833	0.598893	0.29065	0.0636873	0.317994	0.0660479	0.108601	0.116545	0.0717871	0.147159	0.101654	0.106374	0.277374	0.270586	0	0.199365	0.410683	0.0916313	0.524496	0.699696	0.212278	0.216277
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007664 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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