TCONS_00068129 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068129
Unique NameTCONS_00068129
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length425

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068129 ID=TCONS_00068129|Name=TCONS_00068129|organism=Clytia hemisphaerica|type=transcript|length=425bp
TTTCTGCCAGGACTTCCAGGTAGAACTCTTGAAGACCTGACTTTTCAGat
gaaaaaatgtcaattttgctTAATAGAGCTTAAAAGTCGAAAGTATTGGg
gattgacaaaaaaaaaagattgtcATATTTATATCCATGTCCGCGCGGAA
ATAGATTACTTAAATGAGAAGTAGTGATCGATTGCCTTGTTAGAGTGTTT
TTTATAATCGTCTACCGTATAATTTCACTTTCGACTTCATTCGATTCTTT
CACATCAAGCTGCCAAAATGGGTCGAGTCCGTACCAAGACCGTCAAGAAG
GCTGCCAGAGTCATCATCGAGAAATACTACACTCGACTTACTCATGNACC
AAGCGTtacaccagcagcaaaaatatcataaactagactgtgaaaaaagt
ttaacgcttggattcccaggctaat
Run BLAST on NCBI

transcript from alignment at scaffold_48:325795..326411+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068129 ID=TCONS_00068129|Name=TCONS_00068129|organism=Clytia hemisphaerica|type=transcript|length=617bp|location=Sequence derived from alignment at scaffold_48:325795..326411+ (Clytia hemisphaerica)
TTTCTGCCAGGACTTCCAGGTAGAACTCTTGAAGACCTGACTTTTCAGat
gaaaaaatgtcaattttgctTAATAGAGCTTAAAAGTCGAAAGTATTGGg
gattgacaaaaaaaaaagattgtcATATTTATATCCATGTCCGCGCGGAA
ATAGATTACTTAAATGAGAAGTAGTGATCGATTGCCTTGTTAGAGTGTTT
TTTATAATCGTCTACCGTATAATTTCACTTTCGACTTCATTCGATTCTTT
CACATCAAGCTGCCAAAATGGTGGGTGAAATTTGAAGTAATTTTTACTGG
TTAGACGAATTTTAAGCGACTAATATCTTAGCAATCACTTTAAGCTTATC
GTTGCCGATGAGTAATCTCTTTCGATAGTATTTGGAATACTTGCTAATGT
CGATATTTCTtgagaaattttatttcaaccgaagaattttcaattatttg
ttGATCTTGTAGGGTCGAGTCCGTACCAAGACCGTCAAGAAGGCTGCCAG
AGTCATCATCGAGAAATACTACACTCGACTTACTCATGNACCAAGCGTta
caccagcagcaaaaatatcataaactagactgtgaaaaaagtttaacgct
tggattcccaggctaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042528XLOC_042528Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068129-exon-scaffold_48-1491911889:325795..326064TCONS_00068129-exon-scaffold_48-1491911889:325795..326064Clytia hemisphaericaexon
TCONS_00068129-exon-scaffold_48-1510915933:325795..326064TCONS_00068129-exon-scaffold_48-1510915933:325795..326064Clytia hemisphaericaexon
TCONS_00068129-exon-scaffold_48-1575043694:325795..326064TCONS_00068129-exon-scaffold_48-1575043694:325795..326064Clytia hemisphaericaexon
TCONS_00068129-exon-scaffold_48-1491911889:326257..326411TCONS_00068129-exon-scaffold_48-1491911889:326257..326411Clytia hemisphaericaexon
TCONS_00068129-exon-scaffold_48-1510915933:326257..326411TCONS_00068129-exon-scaffold_48-1510915933:326257..326411Clytia hemisphaericaexon
TCONS_00068129-exon-scaffold_48-1575043694:326257..326411TCONS_00068129-exon-scaffold_48-1575043694:326257..326411Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:325795..326411 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.335	23.0831	27.5853	56.0721	70.3658	72.9415	69.2416	79.4605	35.2514	40.0911	50.3874	78.8951	52.9839	67.5566	56.5868	53.0921	78.5016	60.215	23.7523	33.2166	15.6593	16.0233	21.7952	27.4705	157.261	150.083	17.7843	17.7612	17.8957	16.1911
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068129 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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