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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060442 ID=TCONS_00060442|Name=TCONS_00060442|organism=Clytia hemisphaerica|type=transcript|length=1981bp
TTTGTTTTCAGCTTTTATCTGACATACTTTTAGAggtttaaaatataatt
acaaggagaaattgaaaaacaaatgaTACCTAATATTTGTCTAATTTCTA
GAGCGGTGTACATATGAAAACAAACACAAGAGTGCTCTCAGATCTCTTCG
CAAAAAAGTTTCAGTGCAACGTCAGTTATACAAGTTATGAATACTACGTA
GAGCAAAAACTGCGTAACATAGTAAAAAGACTTCAAAGTTacatactttt
ttataagaatactagAATATTAGTCGAGGTTGGGCGTGAAGTTTATAAGA
ACTTGAATTGAAAACAGGTATCAAATTATTCTTTATATAGTCATATAGTC
ATAAAGCCGCCACGAGAAGTTTGATTCGCTAGAAATAATCCAGATGAAAC
TCGACGAACTACCTTACACTAAAGGTGCGCCCTGTTTGTTATGGAACCTG
TTCAATTAAAAAGCTTATAGCAACTTTACttaaattattttcacttttta
atcaATATTACAATGACAAATTTAAAAACTTCCAAGTAAACATGGAAATG
TAAAAGCATAAATATAAACTTTGAAGAGAGCTCACGATATTCTAAATGCC
TGACAAATTGCGTCAAAATACATTAGATTTAGAGTGTTTTGAGAATAGCA
TCGTACCATTGACGGCTGCTCTTTGAATGTTTAATCTTGGAATAAATTTC
TCTTGGCGTCTTTGGGtcgatttgaaaatatttggctTTTAGTTTTGAGG
CTTCCTTGCAGAAGAGCTCATGCCGGTAACATAGTCTTTCCTTAGATTCG
TTTGAAAGTATACTGTAAAGCAAAATAGTCTCGACGTCGGACCATTTGCC
TTGGATAGGGTCCTCTCCGATATATCTTACGTATTGTCCATCAGGAACCC
TTGCAGTCGACAATTCTggttttgacctttttcttgATTTCGTCTGCTGG
GGAACTCGAATTCCATAAGTATTCCCACACTTTTTGCAAATGCAAGCACT
GGTACATGGCCGTTTAGCTATGTAGCAGGGACATTTCGTCTTGTGAAAGT
TATCATCAATACAAGCGACGTCTGATTTCGACGAACGACCACAGGAACAA
GAGGCTTTCAACTTTTTGGATGGTGGCTCCATGATTTGTTCTTCACATAC
GTCAGCGTAGGTGTTTCCATGTTGAGCTATGTAAAGCCAGTATAATGGTG
TAGTGCAGGTTGATGGAAAATATGGGAAAACTGGCAAAAATTGATGGTTG
GTAATCAGGATTATCGTAATGCCTATAAAATTGCAAATCGATTGAATAGT
AGAGCATTTATTCTCCTTCAGCAAAAGAACGTTATCCTCGACTTTATTTG
TGACTCCTTTCAAACTTAACATAGTCCTTGTAGAGACATCACACTTTTCG
ATCAGTATTTTCATTTGATTGGCAGCCACAACAATAAGATTTTCGGGAGT
GACAGAAATTTTAGAAAAGCCGAGTTTAGATACGTTTTCAACTTCACCGC
CATGTGGAATTTCGGTGTCCTTAGCGAAGCCACACAGCTCAAGGACATTC
ATGTTTGGAATGAACCGTTTAATCATTCGAGACGTGTATATTCTCGGGAC
CAGAGGATGATCGAAAACGATACTTCGACGGTTTGTCCATTTACCAGGAG
GTTCCAGAACTCTCGCAATAGACTGGCGCTGGAGTCCTCCAAGCCCAAAC
GATTGTTCTTTTCGTTCGCCATCAGATTTCGAACAGacttttctaaaaag
aaaatgtGAAGTATAAAAAGAAACATCCTCAATGTTCAAAATGCACTTCT
TCATTCCTAACAACTCATGTATAAAATGatcaataaacaaaaaatttctt
gGACCATTACATAgcgggtggacgaacctttccaGGAGGATAAAAAGTTA
AATTCTAAAGGTTCCAGGGGATATAAGACCAACTTTAGGTCGTCCACCCT
CATTTTAAGGTATAACAAGCAATACTTTTAT Run BLAST on NCBI protein sequence of TCONS_00060442-protein >TCONS_00060442-protein ID=TCONS_00060442-protein|Name=TCONS_00060442-protein|organism=Clytia hemisphaerica|type=polypeptide|length=391bp
MKKCILNIEDVSFYTSHFLFRKVCSKSDGERKEQSFGLGGLQRQSIARVL
EPPGKWTNRRSIVFDHPLVPRIYTSRMIKRFIPNMNVLELCGFAKDTEIP
HGGEVENVSKLGFSKISVTPENLIVVAANQMKILIEKCDVSTRTMLSLKG
VTNKVEDNVLLLKENKCSTIQSICNFIGITIILITNHQFLPVFPYFPSTC
TTPLYWLYIAQHGNTYADVCEEQIMEPPSKKLKASCSCGRSSKSDVACID
DNFHKTKCPCYIAKRPCTSACICKKCGNTYGIRVPQQTKSRKRSKPELST
ARVPDGQYVRYIGEDPIQGKWSDVETILLYSILSNESKERLCYRHELFCK
EASKLKAKYFQIDPKTPREIYSKIKHSKSSRQWYDAILKTL Run BLAST on NCBI transcript from alignment at scaffold_341:37688..39668 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060442 ID=TCONS_00060442|Name=TCONS_00060442|organism=Clytia hemisphaerica|type=transcript|length=1981bp|location=Sequence derived from alignment at scaffold_341:37688..39668 (Clytia hemisphaerica)
ATAAAAGTATTGCTTGTTATACCTTAAAATGAGGGTGGACGACCTAAAGT
TGGTCTTATATCCCCTGGAACCTTTAGAATTTAACTTTTTATCCTCCtgg
aaaggttcgtccacccgcTATGTAATGGTCcaagaaattttttgtttatt
gatCATTTTATACATGAGTTGTTAGGAATGAAGAAGTGCATTTTGAACAT
TGAGGATGTTTCTTTTTATACTTCacattttctttttagaaaagtCTGTT
CGAAATCTGATGGCGAACGAAAAGAACAATCGTTTGGGCTTGGAGGACTC
CAGCGCCAGTCTATTGCGAGAGTTCTGGAACCTCCTGGTAAATGGACAAA
CCGTCGAAGTATCGTTTTCGATCATCCTCTGGTCCCGAGAATATACACGT
CTCGAATGATTAAACGGTTCATTCCAAACATGAATGTCCTTGAGCTGTGT
GGCTTCGCTAAGGACACCGAAATTCCACATGGCGGTGAAGTTGAAAACGT
ATCTAAACTCGGCTTTTCTAAAATTTCTGTCACTCCCGAAAATCTTATTG
TTGTGGCTGCCAATCAAATGAAAATACTGATCGAAAAGTGTGATGTCTCT
ACAAGGACTATGTTAAGTTTGAAAGGAGTCACAAATAAAGTCGAGGATAA
CGTTCTTTTGCTGAAGGAGAATAAATGCTCTACTATTCAATCGATTTGCA
ATTTTATAGGCATTACGATAATCCTGATTACCAACCATCAATTTTTGCCA
GTTTTCCCATATTTTCCATCAACCTGCACTACACCATTATACTGGCTTTA
CATAGCTCAACATGGAAACACCTACGCTGACGTATGTGAAGAACAAATCA
TGGAGCCACCATCCAAAAAGTTGAAAGCCTCTTGTTCCTGTGGTCGTTCG
TCGAAATCAGACGTCGCTTGTATTGATGATAACTTTCACAAGACGAAATG
TCCCTGCTACATAGCTAAACGGCCATGTACCAGTGCTTGCATTTGCAAAA
AGTGTGGGAATACTTATGGAATTCGAGTTCCCCAGCAGACGAAATcaaga
aaaaggtcaaaaccAGAATTGTCGACTGCAAGGGTTCCTGATGGACAATA
CGTAAGATATATCGGAGAGGACCCTATCCAAGGCAAATGGTCCGACGTCG
AGACTATTTTGCTTTACAGTATACTTTCAAACGAATCTAAGGAAAGACTA
TGTTACCGGCATGAGCTCTTCTGCAAGGAAGCCTCAAAACTAAAagccaa
atattttcaaatcgaCCCAAAGACGCCAAGAGAAATTTATTCCAAGATTA
AACATTCAAAGAGCAGCCGTCAATGGTACGATGCTATTCTCAAAACACTC
TAAATCTAATGTATTTTGACGCAATTTGTCAGGCATTTAGAATATCGTGA
GCTCTCTTCAAAGTTTATATTTATGCTTTTACATTTCCATGTTTACTTGG
AAGTTTTTAAATTTGTCATTGTAATATtgattaaaaagtgaaaataattt
aaGTAAAGTTGCTATAAGCTTTTTAATTGAACAGGTTCCATAACAAACAG
GGCGCACCTTTAGTGTAAGGTAGTTCGTCGAGTTTCATCTGGATTATTTC
TAGCGAATCAAACTTCTCGTGGCGGCTTTATGACTATATGACTATATAAA
GAATAATTTGATACCTGTTTTCAATTCAAGTTCTTATAAACTTCACGCCC
AACCTCGACTAATATTctagtattcttataaaaaagtatgtAACTTTGAA
GTCTTTTTACTATGTTACGCAGTTTTTGCTCTACGTAGTATTCATAACTT
GTATAACTGACGTTGCACTGAAACTTTTTTGCGAAGAGATCTGAGAGCAC
TCTTGTGTTTGTTTTCATATGTACACCGCTCTAGAAATTAGACAAATATT
AGGTAtcatttgtttttcaatttctccttgtaattatattttaaaccTCT
AAAAGTATGTCAGATAAAAGCTGAAAACAAA Coding sequence (CDS) from alignment at scaffold_341:37688..39668 >TCONS_00060442 ID=TCONS_00060442|Name=TCONS_00060442|organism=Clytia hemisphaerica|type=CDS|length=1176bp|location=Sequence derived from alignment at scaffold_341:37688..39668 (Clytia hemisphaerica)
ATGAAGAAGTGCATTTTGAACATTGAGGATGTTTCTTTTTATACTTCaca
ttttctttttagaaaagtCTGTTCGAAATCTGATGGCGAACGAAAAGAAC
AATCGTTTGGGCTTGGAGGACTCCAGCGCCAGTCTATTGCGAGAGTTCTG
GAACCTCCTGGTAAATGGACAAACCGTCGAAGTATCGTTTTCGATCATCC
TCTGGTCCCGAGAATATACACGTCTCGAATGATTAAACGGTTCATTCCAA
ACATGAATGTCCTTGAGCTGTGTGGCTTCGCTAAGGACACCGAAATTCCA
CATGGCGGTGAAGTTGAAAACGTATCTAAACTCGGCTTTTCTAAAATTTC
TGTCACTCCCGAAAATCTTATTGTTGTGGCTGCCAATCAAATGAAAATAC
TGATCGAAAAGTGTGATGTCTCTACAAGGACTATGTTAAGTTTGAAAGGA
GTCACAAATAAAGTCGAGGATAACGTTCTTTTGCTGAAGGAGAATAAATG
CTCTACTATTCAATCGATTTGCAATTTTATAGGCATTACGATAATCCTGA
TTACCAACCATCAATTTTTGCCAGTTTTCCCATATTTTCCATCAACCTGC
ACTACACCATTATACTGGCTTTACATAGCTCAACATGGAAACACCTACGC
TGACGTATGTGAAGAACAAATCATGGAGCCACCATCCAAAAAGTTGAAAG
CCTCTTGTTCCTGTGGTCGTTCGTCGAAATCAGACGTCGCTTGTATTGAT
GATAACTTTCACAAGACGAAATGTCCCTGCTACATAGCTAAACGGCCATG
TACCAGTGCTTGCATTTGCAAAAAGTGTGGGAATACTTATGGAATTCGAG
TTCCCCAGCAGACGAAATcaagaaaaaggtcaaaaccAGAATTGTCGACT
GCAAGGGTTCCTGATGGACAATACGTAAGATATATCGGAGAGGACCCTAT
CCAAGGCAAATGGTCCGACGTCGAGACTATTTTGCTTTACAGTATACTTT
CAAACGAATCTAAGGAAAGACTATGTTACCGGCATGAGCTCTTCTGCAAG
GAAGCCTCAAAACTAAAagccaaatattttcaaatcgaCCCAAAGACGCC
AAGAGAAATTTATTCCAAGATTAAACATTCAAAGAGCAGCCGTCAATGGT
ACGATGCTATTCTCAAAACACTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060442-exon-scaffold_341-1491911889:37688..39668 | TCONS_00060442-exon-scaffold_341-1491911889:37688..39668 | Clytia hemisphaerica | exon |
| TCONS_00060442-exon-scaffold_341-1510915933:37688..39668 | TCONS_00060442-exon-scaffold_341-1510915933:37688..39668 | Clytia hemisphaerica | exon |
| TCONS_00060442-exon-scaffold_341-1575043694:37688..39668 | TCONS_00060442-exon-scaffold_341-1575043694:37688..39668 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_341 | supercontig | scaffold_341:37688..39668 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR033467 | Tesmin/TSO1-like_CXC |
Blast
The following BLAST results are available for this feature:
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