TCONS_00060219 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060219
Unique NameTCONS_00060219
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length256

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060219 ID=TCONS_00060219|Name=TCONS_00060219|organism=Clytia hemisphaerica|type=transcript|length=256bp
TGTTGTACGCAGCACTGAAGATCTGGAAGTGCACCAGAAATGCTTCCTGC
TATTGTTTTGATGATTAAGTTTTAAATTGATTCTTCTTAGAAAAGGCTCG
TTTTAGCTATCTGTAAGCTATAAATTTATTTAGATCTGAAATATGTGTCc
tgtcagaaaaaggaaaaataaaatttttatatatttaaaaataacTAGCT
CTGCTGTGtaactatttttgaaatattatattgtAAAACCAGGTAAAACT
CACAAA
Run BLAST on NCBI

transcript from alignment at scaffold_337:88153..88408

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060219 ID=TCONS_00060219|Name=TCONS_00060219|organism=Clytia hemisphaerica|type=transcript|length=256bp|location=Sequence derived from alignment at scaffold_337:88153..88408 (Clytia hemisphaerica)
TTTGTGAGTTTTACCTGGTTTTacaatataatatttcaaaaatagttaCA
CAGCAGAGCTAgttatttttaaatatataaaaattttatttttccttttt
ctgacagGACACATATTTCAGATCTAAATAAATTTATAGCTTACAGATAG
CTAAAACGAGCCTTTTCTAAGAAGAATCAATTTAAAACTTAATCATCAAA
ACAATAGCAGGAAGCATTTCTGGTGCACTTCCAGATCTTCAGTGCTGCGT
ACAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037885XLOC_037885Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060219-exon-scaffold_337-1491911889:88153..88408TCONS_00060219-exon-scaffold_337-1491911889:88153..88408Clytia hemisphaericaexon
TCONS_00060219-exon-scaffold_337-1510915933:88153..88408TCONS_00060219-exon-scaffold_337-1510915933:88153..88408Clytia hemisphaericaexon
TCONS_00060219-exon-scaffold_337-1575043694:88153..88408TCONS_00060219-exon-scaffold_337-1575043694:88153..88408Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_337supercontigscaffold_337:88153..88408 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.773129	0	0	0	0.840052	0.58814	0	0	1.39447	1.39253	1.92821	0.792626	1.70122	1.57182	0.537022	1.48385	0	1.34962	0.987442	0	0.727538	0.749347	0.668774	0.957014	0	0	1.57851
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060219 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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